[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,073 items for (author: alt & f)

EMDB-70507:
HCoV-229E S2P bound by one DH1533 Fab, consensus map
Method: single particle / : Wrapp D

EMDB-70508:
HCoV-229E S2P bound by one DH1533 Fab, focused map
Method: single particle / : Wrapp D

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-52748:
Ku from Mycobacterium tuberculosis bound to DNA
Method: single particle / : Chaplin AK, Zahid S

PDB-9i91:
Ku from Mycobacterium tuberculosis bound to DNA
Method: single particle / : Chaplin AK, Zahid S

EMDB-54480:
Tomogram of unbudded yeast cell overexpressing Ldm1
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54483:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-70441:
HCoV-229E S2P bound by two DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-70442:
HCoV-229E S2P bound by one DH1533 Fab
Method: single particle / : Wrapp D

PDB-9ofp:
HCoV-229E S2P bound by two DH1533 Fabs
Method: single particle / : Wrapp D

PDB-9ofq:
HCoV-229E S2P bound by one DH1533 Fab
Method: single particle / : Wrapp D

EMDB-55210:
In situ cryo-ET tomogram of HeLa TMEM192-3xHA Control cell showcasing an endolysosomal structure.
Method: electron tomography / : Kraus F, Li D, Wilfling F, Harper JW

EMDB-55211:
In situ cryo-ET tomogram of HeLa TMEM192-3xHA ASAH1-/- cell showcasing an endolysosomal structure
Method: electron tomography / : Kraus F, Li D, Wilfling F, Harper JW

EMDB-54837:
Chlamydomonas nuclear envelope-bound ribosome
Method: subtomogram averaging / : Waltz F, Lamm L, Righetto RD, Engel BD

EMDB-70440:
HCoV-229E S2P bound by three DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-54486:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor (unbudded region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54487:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor(bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54489:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54497:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-45530:
STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Method: single particle / : Niu L, Tolbert WD, Pazgier M

PDB-9cf5:
STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Method: single particle / : Niu L, Tolbert WD, Pazgier M

EMDB-51847:
80S Ribosome Average for EMPIAR-11830
Method: subtomogram averaging / : Khavnekar S

EMDB-51848:
RuBisCo Average for EMPIAR-11830
Method: subtomogram averaging / : Khavnekar S

EMDB-48424:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

PDB-9mni:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

EMDB-51718:
High resolution structure of B. oleracea mitoribosome
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

PDB-9gyt:
High resolution structure of B. oleracea mitoribosome
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

EMDB-54924:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-54926:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class0)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-54938:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class1)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-55003:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Double Occupancy)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-55012:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Double Occupancy map)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9si3:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9si9:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class0)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9sj5:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class1)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9slj:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Double Occupancy)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-53081:
Cryo-EM structure of human O-GlcNAcase
Method: single particle / : Basse Hansen S, Bartual SG, Yuan H, Raimi OG, Gorelik A, Ferenbach AT, Lytje K, Pedersen JS, Drace T, Boesen T, van Aalten DMF

EMDB-53082:
Cryo-EM structure of O-GlcNAcase from Trichoplax Adhaerens
Method: single particle / : Basse Hansen S, Bartual SG, Yuan H, Raimi OG, Gorelik A, Ferenbach AT, Lytje K, Pedersen JS, Drace T, Boesen T, van Aalten DMF

PDB-9qen:
Cryo-EM structure of human O-GlcNAcase
Method: single particle / : Basse Hansen S, Bartual SG, Yuan H, Raimi OG, Gorelik A, Ferenbach AT, Lytje K, Pedersen JS, Drace T, Boesen T, van Aalten DMF

PDB-9qep:
Cryo-EM structure of O-GlcNAcase from Trichoplax Adhaerens
Method: single particle / : Basse Hansen S, Bartual SG, Yuan H, Raimi OG, Gorelik A, Ferenbach AT, Lytje K, Pedersen JS, Drace T, Boesen T, van Aalten DMF

EMDB-50011:
Structure of the flowering plant mitoribosome with P-site tRNA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

PDB-9evs:
Structure of the flowering plant mitoribosome with P-site tRNA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

EMDB-71743:
Structure of HTTQ23-HAP40 complex bound to macrocycles HHL1, HD4 and HL2
Method: single particle / : Balakrishnan S, Deme J, Lea SM, Harding RJ

EMDB-71744:
Structure of HTTQ23-HAP40 complex bound to macrocycles HHD3, HD4 and HL2
Method: single particle / : Balakrishnan S, Deme J, Lea SM, Harding RJ

PDB-9pmw:
Structure of HTTQ23-HAP40 complex bound to macrocycles HHL1, HD4 and HL2
Method: single particle / : Balakrishnan S, Deme J, Lea SM, Harding RJ

PDB-9pn0:
Structure of HTTQ23-HAP40 complex bound to macrocycles HHD3, HD4 and HL2
Method: single particle / : Balakrishnan S, Deme J, Lea SM, Harding RJ

EMDB-52635:
50S subunit of P. gingivalis ribosome with Lefamulin
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-52640:
70S P. gingivalis ribosome erm-delta-porN strain
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-52641:
Porphyromonas gingivalis 70S ribosome (W83 Strain)
Method: single particle / : Hiregange DG, Bashan A, Yonath A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more