[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 419 items for (author: alexander & jan)

EMDB-49520:
Focused refinement of the prefusion F glycoprotein ectodomain of Nipah virus in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-52488:
Cryo-EM map of human UBR4/KCMF1/CALM1 in complex with UBE2A
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52491:
Cryo-EM structure of UBR4/KCMF1/CALM1 (consensus map)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52494:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (UBR/BS1/ZZ-DZB focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52504:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (consensus map)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52513:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (BS1/UBR/ZZ-DZB focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52516:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (C-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53425:
Cryo-EM structure of the human UBR4 complex (ZZ-DZB deletion variant)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53348:
Cryo-EM structure of the core of the Arabidopsis thaliana UBR4/DI19/CALM1 complex
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53426:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (C-term dimer interface focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53428:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (CALM1 focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53430:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (N-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53431:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (BP focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53432:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (C-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53433:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (C-term dimer interface focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53434:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (N-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53435:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (side focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qt9:
Cryo-EM structure of the core of the Arabidopsis thaliana UBR4/DI19/CALM1 complex
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qws:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (C-term dimer interface focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qwu:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (CALM1 focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qwx:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (N-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qwz:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (BP focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qx0:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (C-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qx1:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (C-term dimer interface focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qx2:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (N-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

PDB-9qx5:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (side focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-51514:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51515:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51516:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqy:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqz:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gr0:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-52348:
Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
Method: single particle / : Tobiasson V, Shikha S, Muhleip A

EMDB-52551:
Cryo-EM structure of the large subunit of the mitochondrial ribosome from Toxoplasma gondii
Method: single particle / : Tobiasson V, Shikha S, Muhleip A

PDB-9hqv:
Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
Method: single particle / : Tobiasson V, Shikha S, Muhleip A

PDB-9i05:
Cryo-EM structure of the large subunit of the mitochondrial ribosome from Toxoplasma gondii
Method: single particle / : Tobiasson V, Shikha S, Muhleip A

EMDB-44380:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-9b9e:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-51786:
Cryo-EM Structure of human OAS2 Dimer
Method: single particle / : Merold VR, Lammens K, de Oliveira Mann CC

PDB-9h1z:
Cryo-EM Structure of human OAS2 Dimer
Method: single particle / : Merold VR, Lammens K, de Oliveira Mann CC

EMDB-44272:
Fab1-2 in complex with the capsid of Adeno-associated virus type 9
Method: single particle / : Mietzsch M, McKenna R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more