Author results

4ZS6
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RECEPTOR BINDING DOMAIN AND FAB COMPLEX
Descriptor:fab Light Chain, fab Heavy Chain, S protein, ...
Authors:Yu, X., Wang, X.
Deposit date:2015-05-13
Release date:2015-09-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.166 Å)
Cite:Structural basis for the neutralization of MERS-CoV by a human monoclonal antibody MERS-27
Sci Rep, 5, 2015
6J7N
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CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TOXIN, RV1045) MUTANT D82A CO-EXPRESSED WITH TAKA FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:guanylyltransferase-like toxin, MAGNESIUM ION
Authors:Yu, X., Gao, X., Zhu, K., Wojdyla, J.A., Wang, M., Cui, S.
Deposit date:2019-01-18
Release date:2020-05-13
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7O
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CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TOXIN, RV1045) MUTANT E146Q FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:guanylyltransferase-like toxin, MAGNESIUM ION
Authors:Yu, X., Gao, X., Zhu, K., Wojdyla, J.A., Wang, M., Cui, S.
Deposit date:2019-01-18
Release date:2020-05-13
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7P
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CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TOXIN, RV1045) MUTANT E146Q CO-EXPRESSED WITH TAKA FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:guanylyltransferase-like toxin, MAGNESIUM ION
Authors:Yu, X., Gao, X., Zhu, K., Wojdyla, J.A., Wang, M., Cui, S.
Deposit date:2019-01-18
Release date:2020-05-13
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (2.629 Å)
Cite:Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7Q
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CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TOXIN, RV1045) MUTANT S78A FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:guanylyltransferase-like toxin, MAGNESIUM ION, CALCIUM ION
Authors:Yu, X., Gao, X., Zhu, K., Wojdyla, J.A., Wang, M., Cui, S.
Deposit date:2019-01-18
Release date:2020-05-13
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7R
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CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TOXIN, RV1045) MUTANT S78A CO-EXPRESSED WITH TAKA FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:guanylyltransferase-like toxin, MAGNESIUM ION
Authors:Yu, X., Gao, X., Zhu, K., Wojdyla, J.A., Wang, M., Cui, S.
Deposit date:2019-01-18
Release date:2020-05-13
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7S
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CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TOXIN, RV1045) WILD TYPE PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:guanylyltransferase-like toxin, MAGNESIUM ION
Authors:Yu, X., Gao, X., Zhu, K., Wojdyla, J.A., Wang, M., Cui, S.
Deposit date:2019-01-18
Release date:2020-05-13
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7T
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CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TOXIN, RV1045) MUTANT D82A FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:guanylyltransferase-like toxin, MAGNESIUM ION, GLYCEROL
Authors:Yu, X., Gao, X., Zhu, K., Wojdyla, J.A., Wang, M., Cui, S.
Deposit date:2019-01-18
Release date:2020-05-13
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
3OMH
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CRYSTAL STRUCTURE OF PTPN22 IN COMPLEX WITH SKAP-HOM PTYR75 PEPTIDE
Descriptor:Tyrosine-protein phosphatase non-receptor type 22, Src kinase-associated phosphoprotein 2
Authors:Yu, X., Sun, J.-P., Zhang, S., Zhang, Z.-Y.
Deposit date:2010-08-26
Release date:2011-06-29
Last modified:2011-09-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Substrate Specificity of Lymphoid-specific Tyrosine Phosphatase (Lyp) and Identification of Src Kinase-associated Protein of 55 kDa Homolog (SKAP-HOM) as a Lyp Substrate.
J.Biol.Chem., 286, 2011
6MP6
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CRYO-EM STRUCTURE OF THE HUMAN NEUTRAL AMINO ACID TRANSPORTER ASCT2
Descriptor:Neutral amino acid transporter B(0), 2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yu, X., Han, S.
Deposit date:2018-10-05
Release date:2019-11-06
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Cryo-EM structures of the human glutamine transporter SLC1A5 (ASCT2) in the outward-facing conformation.
Elife, 8, 2019
6MPB
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CRYO-EM STRUCTURE OF THE HUMAN NEUTRAL AMINO ACID TRANSPORTER ASCT2
Descriptor:Neutral amino acid transporter B(0), GLUTAMINE, 2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yu, X., Han, S.
Deposit date:2018-10-05
Release date:2019-11-06
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Cryo-EM structures of the human glutamine transporter SLC1A5 (ASCT2) in the outward-facing conformation.
Elife, 8, 2019
2QCT
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STRUCTURE OF LYP WITH INHIBITOR I-C11
Descriptor:Tyrosine-protein phosphatase non-receptor type 22, 6-HYDROXY-3-{(4R)-1-[4-(1-NAPHTHYLAMINO)-4-OXOBUTYL]-1,2,3-TRIAZOLIDIN-4-YL}-1-BENZOFURAN-5-CARBOXYLIC ACID, 1,2-ETHANEDIOL
Authors:Yu, X., Sun, J.P., Zhang, Z.Y.
Deposit date:2007-06-19
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Lyp and its complex with a selective inhibitor
To be Published
2REC
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RECA HEXAMER MODEL, ELECTRON MICROSCOPY
Descriptor:RECA
Authors:Yu, X., Egelman, E.H.
Deposit date:1996-12-03
Release date:1997-04-01
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY
Cite:The RecA hexamer is a structural homologue of ring helicases.
Nat.Struct.Biol., 4, 1997
3B8K
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STRUCTURE OF THE TRUNCATED HUMAN DIHYDROLIPOYL ACETYLTRANSFERASE (E2)
Descriptor:Dihydrolipoyllysine-residue acetyltransferase
Authors:Yu, X., Hiromasa, Y., Tsen, H., Stoops, J.K., Roche, T.E., Zhou, Z.H.
Deposit date:2007-11-01
Release date:2008-01-22
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:Structures of the human pyruvate dehydrogenase complex cores: a highly conserved catalytic center with flexible N-terminal domains
Structure, 16, 2008
3CNF
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3.88 ANGSTROM STRUCTURE OF CYTOPLASMIC POLYHEDROSIS VIRUS BY CRYO-ELECTRON MICROSCOPY
Descriptor:VP1, VP3
Authors:Yu, X., Jin, L., Zhou, Z.H.
Deposit date:2008-03-25
Release date:2008-04-29
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy.
Nature, 453, 2008
3FCG
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CRYSTAL STRUCTURE ANALYSIS OF THE MIDDLE DOMAIN OF THE CAF1A USHER
Descriptor:F1 capsule-anchoring protein, CHLORIDE ION
Authors:Yu, X., Visweswaran, G.R., Duck, Z., Marupakula, S., MacIntyre, S., Knight, S., Zavialov, A.V.
Deposit date:2008-11-21
Release date:2008-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Caf1A usher possesses a Caf1 subunit-like domain that is crucial for Caf1 fibre secretion
Biochem.J., 418, 2009
3IZX
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3.1 ANGSTROM CRYOEM STRUCTURE OF CYTOPLASMIC POLYHEDROSIS VIRUS
Descriptor:Structural protein VP3, Capsid protein VP1, Viral structural protein 5
Authors:Yu, X., Ge, P., Jiang, J., Atanasov, I., Zhou, Z.H.
Deposit date:2011-01-15
Release date:2011-06-22
Last modified:2018-08-22
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Atomic Model of CPV Reveals the Mechanism Used by This Single-Shelled Virus to Economically Carry Out Functions Conserved in Multishelled Reoviruses.
Structure, 19, 2011
3J1R
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FILAMENTS FROM IGNICOCCUS HOSPITALIS SHOW DIVERSITY OF PACKING IN PROTEINS CONTAINING N-TERMINAL TYPE IV PILIN HELICES
Descriptor:archaeal adhesion filament core
Authors:Yu, X., Goforth, C., Meyer, C., Rachel, R., Wirth, R., Schroeder, G.F., Egelman, E.H.
Deposit date:2012-05-18
Release date:2012-06-20
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Filaments from Ignicoccus hospitalis Show Diversity of Packing in Proteins Containing N-Terminal Type IV Pilin Helices.
J.Mol.Biol., 422, 2012
3J2V
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CRYOEM STRUCTURE OF HBV CORE
Descriptor:PreC/core protein
Authors:Yu, X., Jin, L., Jih, J., Shih, C., Zhou, Z.H.
Deposit date:2013-01-11
Release date:2013-10-02
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:3.5 angstrom cryoEM Structure of Hepatitis B Virus Core Assembled from Full-Length Core Protein.
Plos One, 8, 2013
3OLR
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PTPN22 IN COMPLEX WITH CONSENSUS PHOSPHO-TYROSINE PEPTIDE 1
Descriptor:Tyrosine-protein phosphatase non-receptor type 22, SKAP2
Authors:Yu, X., Sun, J.-P., Zhang, S., Zhang, Z.-Y.
Deposit date:2010-08-26
Release date:2011-06-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure basis of LYP substrate specificity revealed by reverse alanine screening and crystallography
To be Published
3TAY
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CRYSTAL STRUCTURE OF PORCINE ROTAVIRUS CRW-8 VP8* IN COMPLEX WITH N-GLYCOLYLNEURAMINIC ACID
Descriptor:Outer capsid protein VP4, methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid, SULFATE ION, ...
Authors:Yu, X., Blanchard, H.
Deposit date:2011-08-04
Release date:2012-10-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis of Rotavirus Strain Preference toward N-Acetyl- or N-Glycolylneuraminic Acid-Containing Receptors.
J.Virol., 86, 2012
3TB0
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CRYSTAL STRUCTURE OF RHESUS ROTAVIRUS VP8* IN COMPLEX WITH N-GLYCOLYLNEURAMINIC ACID
Descriptor:Outer capsid protein VP4, methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid, GLYCEROL, ...
Authors:Yu, X., Blanchard, H.
Deposit date:2011-08-04
Release date:2012-10-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Rotavirus Strain Preference toward N-Acetyl- or N-Glycolylneuraminic Acid-Containing Receptors.
J.Virol., 86, 2012
4BM7
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CRYSTAL STRUCTURE OF IGG FC F241A MUTANT WITH NATIVE GLYCOSYLATION
Descriptor:IG GAMMA-1 CHAIN C REGION, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION
Authors:Yu, X., Baruah, K., Harvey, D.J., Vasiljevic, S., Alonzi, D.S., Song, B., Higgins, M.K., Bowden, T.A., Crispin, M., Scanlan, C.N.
Deposit date:2013-05-07
Release date:2013-07-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Engineering Hydrophobic Protein-Carbohydrate Interactions to Fine-Tune Monoclonal Antibodies.
J.Am.Chem.Soc., 135, 2013
4JYO
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STRUCTURAL BASIS FOR ANGIOPOIETIN-1 MEDIATED SIGNALING INITIATION
Descriptor:Angiopoietin-1, CALCIUM ION
Authors:Yu, X., Seegar, T.C.M., Dalton, A.C., Tzvetkova-Robev, D., Goldgur, Y., Nikolov, D.B., Barton, W.A.
Deposit date:2013-03-31
Release date:2013-05-08
Last modified:2013-05-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for angiopoietin-1-mediated signaling initiation.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JZC
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ANGIOPOIETIN-2 FIBRINOGEN DOMAIN TAG MUTANT
Descriptor:Angiopoietin-2
Authors:Yu, X., Seegar, T.C.M., Dalton, A.C., Tzvetkova-Robev, D., Goldgur, Y., Nikolov, D.B., Barton, W.A.
Deposit date:2013-04-02
Release date:2013-05-08
Last modified:2013-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for angiopoietin-1-mediated signaling initiation.
Proc.Natl.Acad.Sci.USA, 110, 2013
171588
PDB entries from 2020-11-25