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2E74
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CRYSTAL STRUCTURE OF THE CYTOCHROME B6F COMPLEX FROM M.LAMINOSUS
Descriptor:Cytochrome b6, Cytochrome b6-f complex subunit 4, Apocytochrome f, ...
Authors:Cramer, W.A., Yamashita, E., Zhang, H.
Deposit date:2007-01-05
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Cytochrome b(6)f Complex: Quinone Analogue Inhibitors as Ligands of Heme c(n)
J.Mol.Biol., 370, 2007
2E75
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CRYSTAL STRUCTURE OF THE CYTOCHROME B6F COMPLEX WITH 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE (NQNO) FROM M.LAMINOSUS
Descriptor:Cytochrome b6, Cytochrome b6-f complex subunit 4, Apocytochrome f, ...
Authors:Cramer, W.A., Yamashita, E., Zhang, H.
Deposit date:2007-01-05
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Structure of the Cytochrome b(6)f Complex: Quinone Analogue Inhibitors as Ligands of Heme c(n)
J.Mol.Biol., 370, 2007
2E76
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CRYSTAL STRUCTURE OF THE CYTOCHROME B6F COMPLEX WITH TRIDECYL-STIGMATELLIN (TDS) FROM M.LAMINOSUS
Descriptor:Cytochrome b6, Cytochrome b6-f complex subunit 4, Apocytochrome f, ...
Authors:Cramer, W.A., Yamashita, E., Zhang, H.
Deposit date:2007-01-05
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.41 Å)
Cite:Structure of the Cytochrome b(6)f Complex: Quinone Analogue Inhibitors as Ligands of Heme c(n)
J.Mol.Biol., 370, 2007
2ZFG
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STRUCTURE OF OMPF PORIN
Descriptor:Outer membrane protein F, MAGNESIUM ION, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
Authors:Cramer, W.A., Zakharov, S.D., Yamashita, E.
Deposit date:2008-01-04
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal structures of the OmpF porin: function in a colicin translocon.
Embo J., 27, 2008
2ZLD
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STRUCTURE OF OMPF CO-CRYSTALLIZED WITH T83
Descriptor:Outer membrane protein F, Colicin-E3
Authors:Cramer, W.A., Zakharov, S.D., Yamashita, E.
Deposit date:2008-04-09
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of the OmpF porin: function in a colicin translocon.
Embo J., 27, 2008
3AQJ
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CRYSTAL STRUCTURE OF A C-TERMINAL DOMAIN OF THE BACTERIOPHAGE P2 TAIL SPIKE PROTEIN, GPV
Descriptor:Baseplate assembly protein V, FE (II) ION, CHLORIDE ION, ...
Authors:Takeda, S., Yamashita, E., Nakagawa, A.
Deposit date:2010-11-06
Release date:2011-08-10
Last modified:2012-04-25
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:The host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure
Acta Crystallogr.,Sect.F, 67, 2011
5X19
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CO BOUND CYTOCHROME C OXIDASE AT 100 MICRO SEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1B
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CO BOUND CYTOCHROME C OXIDASE AT 20 NSEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1F
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CO BOUND CYTOCHROME C OXIDASE WITHOUT PUMP LASER IRRADIATION AT 278K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
1OCC
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STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
Descriptor:CYTOCHROME C OXIDASE, COPPER (II) ION, MAGNESIUM ION, ...
Authors:Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., Yoshikawa, S.
Deposit date:1996-04-18
Release date:1996-12-07
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.
Science, 272, 1996
4V60
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THE STRUCTURE OF RAT LIVER VAULT AT 3.5 ANGSTROM RESOLUTION
Descriptor:Major vault protein
Authors:Kato, K., Zhou, Y., Tanaka, H., Yao, M., Yamashita, E., Yoshimura, M., Tsukihara, T.
Deposit date:2008-10-24
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The structure of rat liver vault at 3.5 angstrom resolution
Science, 323, 2009
1UKL
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CRYSTAL STRUCTURE OF IMPORTIN-BETA AND SREBP-2 COMPLEX
Descriptor:Importin beta-1 subunit, Sterol regulatory element binding protein-2
Authors:Lee, S.J., Sekimoto, T., Yamashita, E., Nagoshi, E., Nakagawa, A., Imamoto, N., Yoshimura, M., Sakai, H., Tsukihara, T., Yoneda, Y.
Deposit date:2003-08-26
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Structure of Importin-beta Bound to SREBP-2: Nuclear Import of a Transcription Factor
Science, 302, 2003
3VU9
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CRYSTAL STRUCTURE OF PSY3-CSM2 COMPLEX
Descriptor:Platinum sensitivity protein 3, Chromosome segregation in meiosis protein 2, 1,2-ETHANEDIOL
Authors:Tawaramoto, M., Sasanuma, H., Hosaka, H., Lao, J.P., Sanda, E., Suzuki, M., Yamashita, E., Hunter, N., Shinohara, M., Nakagawa, A., Shinohara, A.
Deposit date:2012-06-23
Release date:2013-04-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A new protein complex promoting the assembly of Rad51 filaments
Nat Commun, 4, 2013
1IOO
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CRYSTAL STRUCTURE OF NICOTIANA ALATA GEMETOPHYTIC SELF-INCOMPATIBILITY ASSOCIATED SF11-RNASE
Descriptor:SF11-RNASE, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Ida, K., Sato, M., Sakiyama, F., Norioka, S., Yamamoto, M., Kumasaka, T., Yamashita, E.
Deposit date:2001-03-26
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The 1.55 A resolution structure of Nicotiana alata S(F11)-RNase associated with gametophytic self-incompatibility.
J.Mol.Biol., 314, 2001
6IOK
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CRYO-EM STRUCTURE OF MULTIDRUG EFFLUX PUMP MEXAB-OPRM (0 DEGREE STATE)
Descriptor:Multidrug resistance protein MexA, Outer membrane protein OprM, Multidrug resistance protein MexB
Authors:Tsutsumi, K., Yonehara, R., Nakagawa, A., Yamashita, E.
Deposit date:2018-10-30
Release date:2019-04-03
Last modified:2019-04-17
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Structures of the wild-type MexAB-OprM tripartite pump reveal its complex formation and drug efflux mechanism.
Nat Commun, 10, 2019
6IOL
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CRYO-EM STRUCTURE OF MULTIDRUG EFFLUX PUMP MEXAB-OPRM (60 DEGREE STATE)
Descriptor:Multidrug resistance protein MexA, Outer membrane protein OprM, Multidrug resistance protein MexB
Authors:Tsutsumi, K., Yonehara, R., Nakagawa, A., Yamashita, E.
Deposit date:2018-10-30
Release date:2019-04-03
Last modified:2019-04-17
Method:ELECTRON MICROSCOPY (3.76 Å)
Cite:Structures of the wild-type MexAB-OprM tripartite pump reveal its complex formation and drug efflux mechanism.
Nat Commun, 10, 2019
1DDZ
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X-RAY STRUCTURE OF A BETA-CARBONIC ANHYDRASE FROM THE RED ALGA, PORPHYRIDIUM PURPUREUM R-1
Descriptor:CARBONIC ANHYDRASE, ZINC ION
Authors:Mitsuhashi, S., Mizushima, T., Yamashita, E., Miyachi, S., Tsukihara, T.
Deposit date:1999-11-12
Release date:2000-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structure of beta-carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO(2) hydration.
J.Biol.Chem., 275, 2000
1ERZ
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CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES
Descriptor:N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE
Authors:Nakai, T., Hasegawa, T., Yamashita, E., Yamamoto, M., Kumasaka, T., Ueki, T., Nanba, H., Ikenaka, Y., Takahashi, S., Sato, M., Tsukihara, T.
Deposit date:2000-04-06
Release date:2001-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.
Structure Fold.Des., 8, 2000
1IWG
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CRYSTAL STRUCTURE OF BACTERIAL MULTIDRUG EFFLUX TRANSPORTER ACRB
Descriptor:AcrB
Authors:Murakami, S., Nakashima, R., Yamashita, E., Yamaguchi, A.
Deposit date:2002-05-15
Release date:2002-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of bacterial multidrug efflux transporter AcrB
NATURE, 419, 2002
1O5W
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THE STRUCTURE BASIS OF SPECIFIC RECOGNITIONS FOR SUBSTRATES AND INHIBITORS OF RAT MONOAMINE OXIDASE A
Descriptor:Amine oxidase [flavin-containing] A, FLAVIN-ADENINE DINUCLEOTIDE, N-[3-(2,4-DICHLOROPHENOXY)PROPYL]-N-METHYL-N-PROP-2-YNYLAMINE
Authors:Ma, J., Yoshimura, M., Yamashita, E., Nakagawa, A., Ito, A., Tsukihara, T.
Deposit date:2003-10-06
Release date:2004-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of rat monoamine oxidase a and its specific recognitions for substrates and inhibitors.
J.Mol.Biol., 338, 2004
1V54
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
Descriptor:Cytochrome c oxidase polypeptide I, Cytochrome c oxidase polypeptide II, Cytochrome c oxidase polypeptide III, ...
Authors:Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.
Deposit date:2003-11-21
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
1V55
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY REDUCED STATE
Descriptor:Cytochrome c oxidase polypeptide I, Cytochrome c oxidase polypeptide II, Cytochrome c oxidase polypeptide III, ...
Authors:Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.
Deposit date:2003-11-21
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
1WRU
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STRUCTURE OF CENTRAL HUB ELUCIDATED BY X-RAY ANALYSIS OF GENE PRODUCT 44; BASEPLATE COMPONENT OF BACTERIOPHAGE MU
Descriptor:43 kDa tail protein
Authors:Kondou, Y., Kitazawa, D., Takeda, S., Yamashita, E., Mizuguchi, M., Kawano, K., Tsukihara, T.
Deposit date:2004-10-27
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of central hub elucidated by X-ray analysis of gene product 44; baseplate component of bacteriophage Mu
To be Published
1WSR
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CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE CLEAVAGE SYSTEM
Descriptor:Aminomethyltransferase, SULFATE ION
Authors:Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.
Deposit date:2004-11-10
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005
1WSV
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CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE CLEAVAGE SYSTEM
Descriptor:Aminomethyltransferase, SULFATE ION, N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID
Authors:Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.
Deposit date:2004-11-11
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005