5X1F

CO bound cytochrome c oxidase without pump laser irradiation at 278K

Summary for 5X1F

Related5X19 5X1B
DescriptorCytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ... (30 entities in total)
Functional Keywordscytochrome c oxidase, x-ray free electron laser, time resolved analysis, proton pump, membrane protein, oxidoreductase
Biological sourceBos taurus (Bovine)
Cellular locationMitochondrion inner membrane; Multi-pass membrane protein P00396 P68530 P00415
Mitochondrion inner membrane P00423 P00426 P00428 P07471 P04038 P07470 P13183 P00430 P10175
Mitochondrion intermembrane space P00429
Total number of polymer chains26
Total molecular weight443398.59
Authors
Primary citation
Shimada, A.,Kubo, M.,Baba, S.,Yamashita, K.,Hirata, K.,Ueno, G.,Nomura, T.,Kimura, T.,Shinzawa-Itoh, K.,Baba, J.,Hatano, K.,Eto, Y.,Miyamoto, A.,Murakami, H.,Kumasaka, T.,Owada, S.,Tono, K.,Yabashi, M.,Yamaguchi, Y.,Yanagisawa, S.,Sakaguchi, M.,Ogura, T.,Komiya, R.,Yan, J.,Yamashita, E.,Yamamoto, M.,Ago, H.,Yoshikawa, S.,Tsukihara, T.
A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3:e1603042-e1603042, 2017
PubMed: 28740863 (PDB entries with the same primary citation)
DOI: 10.1126/sciadv.1603042
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.209110.9%4.8%3.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5x1f
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Molmil generated image of 5x1f
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More Biological unit images

Molmil generated image of 5x1f
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Molmil generated image of 5x1f
rotated about x axis by 90°
Molmil generated image of 5x1f
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5x1f.pdb1.gz [636.19 KB])
Coordinate files for Biological unit (5x1f.pdb2.gz [632.46 KB])