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1IR6
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CRYSTAL STRUCTURE OF EXONUCLEASE RECJ BOUND TO MANGANESE
Descriptor:exonuclease RecJ, MANGANESE (II) ION
Authors:Yamagata, A., Kakuta, Y., Masui, R., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-09-11
Release date:2002-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
Proc.Natl.Acad.Sci.USA, 99, 2002
3A36
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STRUCTURAL INSIGHT INTO THE MEMBRANE INSERTION OF TAIL-ANCHORED PROTEINS BY GET3
Descriptor:ATPase GET3, ZINC ION
Authors:Yamagata, A., Mimura, H., Sato, Y., Yamashita, M., Yoshikawa, A., Fukai, S.
Deposit date:2009-06-10
Release date:2010-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insight into the membrane insertion of tail-anchored proteins by Get3
Genes Cells, 15, 2010
3A37
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STRUCTURAL INSIGHT INTO THE MEMBRANE INSERTION OF TAIL-ANCHORED PROTEINS BY GET3
Descriptor:ATPase GET3, ADENOSINE-5'-DIPHOSPHATE, ZINC ION
Authors:Yamagata, A., Mimura, H., Sato, Y., Yamashita, M., Yoshikawa, A., Fukai, S.
Deposit date:2009-06-10
Release date:2010-01-12
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insight into the membrane insertion of tail-anchored proteins by Get3
Genes Cells, 15, 2010
4YFD
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CRYSTAL STRUCTURE PTP DELTA IG1-FN2 IN COMPLEX WITH IL-1RACP
Descriptor:Interleukin-1 receptor accessory protein, Receptor-type tyrosine-protein phosphatase delta, N-ACETYL-D-GLUCOSAMINE
Authors:Yamagata, A., Fukai, S.
Deposit date:2015-02-25
Release date:2015-05-06
Method:X-RAY DIFFRACTION (3.253 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YFE
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CRYSTAL STRUCTURE OF PTP DELTA FN1-FN2
Descriptor:Receptor-type tyrosine-protein phosphatase delta
Authors:Yamagata, A., Fukai, S.
Deposit date:2015-02-25
Release date:2015-05-06
Method:X-RAY DIFFRACTION (1.972 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YFG
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CRYSTAL STRUCTURE OF PTP DELTA MEA3/MEB MINUS VARIANT IG1-FN1
Descriptor:Receptor-type tyrosine-protein phosphatase delta, N-ACETYL-D-GLUCOSAMINE
Authors:Yamagata, A., Fukai, S.
Deposit date:2015-02-25
Release date:2015-05-06
Method:X-RAY DIFFRACTION (3.491 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YH6
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CRYSTAL STRUCTURE OF IL1RAPL1 ECTODOMAIN
Descriptor:Interleukin-1 receptor accessory protein-like 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Yamagata, A., Fukai, S.
Deposit date:2015-02-27
Release date:2015-05-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YH7
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CRYSTAL STRUCTURE OF PTPDELTA ECTODOMAIN IN COMPLEX WITH IL1RAPL1
Descriptor:Receptor-type tyrosine-protein phosphatase delta, Interleukin-1 receptor accessory protein-like 1, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Yamagata, A., Fukai, S.
Deposit date:2015-02-27
Release date:2015-05-06
Method:X-RAY DIFFRACTION (4.4 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
5Y2Z
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CRYSTAL STRUCTURE OF HUMAN LGI1 EPTP-ADAM22 COMPLEX
Descriptor:Disintegrin and metalloproteinase domain-containing protein 22, Leucine-rich glioma-inactivated protein 1, CALCIUM ION, ...
Authors:Yamagata, A., Fukai, S.
Deposit date:2017-07-27
Release date:2018-05-02
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Structural basis of epilepsy-related ligand-receptor complex LGI1-ADAM22.
Nat Commun, 9, 2018
5Y30
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CRYSTAL STRUCTURE OF LGI1 LRR DOMAIN
Descriptor:Leucine-rich glioma-inactivated protein 1
Authors:Yamagata, A., Fukai, S.
Deposit date:2017-07-27
Release date:2018-05-02
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:Structural basis of epilepsy-related ligand-receptor complex LGI1-ADAM22.
Nat Commun, 9, 2018
5Y31
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CRYSTAL STRUCTURE OF HUMAN LGI1-ADAM22 COMPLEX
Descriptor:Disintegrin and metalloproteinase domain-containing protein 22, Leucine-rich glioma-inactivated protein 1, CALCIUM ION, ...
Authors:Yamagata, A., Fukai, S.
Deposit date:2017-07-27
Release date:2018-05-02
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (7.125 Å)
Cite:Structural basis of epilepsy-related ligand-receptor complex LGI1-ADAM22.
Nat Commun, 9, 2018
5Y32
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CRYSTAL STRUCTURE OF PTP DELTA IG1-IG2 IN COMPLEX WITH IL1RAPL1
Descriptor:Interleukin-1 receptor accessory protein-like 1, Receptor-type tyrosine-protein phosphatase delta, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Yamagata, A., Fukai, S.
Deposit date:2017-07-27
Release date:2017-08-16
Last modified:2019-02-27
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
5Z8X
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CRYSTAL STRUCTURE OF HUMAN LRRTM2
Descriptor:Leucine-rich repeat transmembrane neuronal protein 2, N-ACETYL-D-GLUCOSAMINE
Authors:Yamagata, A., Fukai, S.
Deposit date:2018-02-01
Release date:2018-10-10
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
5Z8Y
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CRYSTAL STRUCTURE OF HUMAN LRRTM2 IN COMPLEX WITH NEUREXIN 1BETA
Descriptor:Leucine-rich repeat transmembrane neuronal protein 2, Neurexin-1-beta, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Yamagata, A., Fukai, S.
Deposit date:2018-02-01
Release date:2018-10-10
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
2OAP
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CRYSTAL STRUCTURE OF THE ARCHAEAL SECRETION ATPASE GSPE IN COMPLEX WITH AMP-PNP
Descriptor:Type II secretion system protein, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION
Authors:Yamagata, A., Tainer, J.A.
Deposit date:2006-12-17
Release date:2007-02-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.
Embo J., 26, 2007
2OAQ
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CRYSTAL STRUCTURE OF THE ARCHAEAL SECRETION ATPASE GSPE IN COMPLEX WITH PHOSPHATE
Descriptor:Type II secretion system protein, PHOSPHATE ION
Authors:Yamagata, A., Tainer, J.A.
Deposit date:2006-12-17
Release date:2007-02-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.
Embo J., 26, 2007
3VHJ
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CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF BFPC
Descriptor:BfpC
Authors:Yamagata, A., Tainer, J.A., Donnenberg, M.S.
Deposit date:2011-08-25
Release date:2012-05-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of an Essential Type IV Pilus Biogenesis Protein Provides Insights into Pilus and Type II Secretion Systems
J.Mol.Biol., 419, 2012
3VXM
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THE COMPLEX BETWEEN C1-28 TCR AND HLA-A24 BOUND TO HIV-1 NEF134-10(2F) PEPTIDE
Descriptor:HLA class I histocompatibility antigen, A-24 alpha chain, Beta-2-microglobulin, ...
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXN
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HLA-A24 IN COMPLEX WITH HIV-1 NEF134-10(WT)
Descriptor:HLA class I histocompatibility antigen, A-24 alpha chain, Beta-2-microglobulin, ...
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXO
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HLA-A24 IN COMPLEX WITH HIV-1 NEF134-10(2F)
Descriptor:HLA class I histocompatibility antigen, A-24 alpha chain, Beta-2-microglobulin, ...
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXP
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HLA-A24 IN COMPLEX WITH HIV-1 NEF134-10(6L)
Descriptor:HLA class I histocompatibility antigen, A-24 alpha chain, Beta-2-microglobulin, ...
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXQ
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H27-14 TCR SPECIFIC FOR HLA-A24-NEF134-10
Descriptor:H27-14 TCR alpha chain, H27-14 TCR beta chain
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXR
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THE COMPLEX BETWEEN H27-14 TCR AND HLA-A24 BOUND TO HIV-1 NEF134-10(WT) PEPTIDE
Descriptor:HLA class I histocompatibility antigen, A-24 alpha chain, Beta-2-microglobulin, ...
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXS
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THE COMPLEX BETWEEN H27-14 TCR AND HLA-A24 BOUND TO HIV-1 NEF134-10(6L) PEPTIDE
Descriptor:HLA class I histocompatibility antigen, A-24 alpha chain, Beta-2-microglobulin, ...
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXT
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T36-5 TCR SPECIFIC FOR HLA-A24-NEF134-10
Descriptor:T36-5 TCR alpha chain, T36-5 TCR beta chain
Authors:Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
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