Author results

3BD9
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HUMAN 3-O-SULFOTRANSFERASE ISOFORM 5 WITH BOUND PAP
Descriptor:Heparan sulfate glucosamine 3-O-sulfotransferase 5, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Xu, D., Moon, A.F., Song, D., Liu, J., Pedersen, L.C.
Deposit date:2007-11-14
Release date:2008-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Engineering sulfotransferases to modify heparan sulfate.
Nat.Chem.Biol., 4, 2008
4IM8
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LOW RESOLUTION CRYSTAL STRUCTURE OF MOUSE RAGE
Descriptor:Advanced glycation end-products receptor
Authors:Xu, D., Young, J.H., Krahn, J.M., Song, D., Corbett, K.D., Chazin, W.J., Pedersen, L.C., Esko, J.D.
Deposit date:2013-01-02
Release date:2013-08-14
Last modified:2014-02-26
Method:X-RAY DIFFRACTION (3.503 Å)
Cite:Stable RAGE-Heparan Sulfate Complexes Are Essential for Signal Transduction.
Acs Chem.Biol., 8, 2013
1NWB
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SOLUTION NMR STRUCTURE OF PROTEIN AQ_1857 FROM AQUIFEX AEOLICUS: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET QR6.
Descriptor:Hypothetical protein AQ_1857
Authors:Xu, D., Liu, G., Xiao, R., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2003-02-05
Release date:2003-06-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the hypothetical protein AQ-1857 encoded by the Y157 gene from Aquifex aeolicus reveals a novel protein fold.
Proteins, 54, 2004
5GWD
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STRUCTURE OF MYROILYSIN
Descriptor:Myroilysin, ZINC ION
Authors:Xu, D., Ran, T., Wang, W.
Deposit date:2016-09-10
Release date:2017-02-15
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Myroilysin Is a New Bacterial Member of the M12A Family of Metzincin Metallopeptidases and Is Activated by a Cysteine Switch Mechanism.
J. Biol. Chem., 292, 2017
5CZW
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CRYSTAL STRUCTURE OF MYROILYSIN
Descriptor:Myroilysin, ZINC ION
Authors:Zhou, J., Ran, T., Xu, D., Wang, W.
Deposit date:2015-08-01
Release date:2016-08-03
Last modified:2017-04-26
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Myroilysin is a New Bacterial Member of the M12A Family of Metzincin Metallopeptidases and Activated by a Cysteine-switch Mechanism
J. Biol. Chem., 292, 2017
5GP7
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STRUCTURAL BASIS FOR THE BINDING BETWEEN TANKYRASE-1 AND USP25
Descriptor:Tankyrase-1, Ubiquitin carboxyl-terminal hydrolase 25, GLYCEROL
Authors:Liu, J., Xu, D., Fu, T., Pan, L.
Deposit date:2016-08-01
Release date:2017-07-12
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:USP25 regulates Wnt signaling by controlling the stability of tankyrases
Genes Dev., 31, 2017
5Y0E
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CRYSTAL STRUCTURE OF TSSK
Descriptor:TssK, SULFATE ION
Authors:Tong, H., Xu, D., Ran, T., Wang, W.W.
Deposit date:2017-07-17
Release date:2018-08-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of TssK at 2.5 Angstroms resolution.
To Be Published
3S1S
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CHARACTERIZATION AND CRYSTAL STRUCTURE OF THE TYPE IIG RESTRICTION ENDONUCLEASE BPUSI
Descriptor:restriction endonuclease BpuSI, S-ADENOSYL-L-HOMOCYSTEINE, 1,2-ETHANEDIOL, ...
Authors:Shen, B.W., Xu, D., Chan, S.-H., Zheng, Y., Zhu, Y., Xu, S.-Y., Stoddard, B.L.
Deposit date:2011-05-16
Release date:2011-07-13
Last modified:2011-10-19
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI.
Nucleic Acids Res., 39, 2011
5XNB
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CRYSTAL STRUCTURE OF THE ICMS-ICMW-DOTL COMPLEX OF THE LEGIONELLA TYPE IVB SECRETION SYSTEM
Descriptor:DotL, IcmS protein, IcmW, ...
Authors:Xu, J., Xu, D., Zhu, Y.
Deposit date:2017-05-19
Release date:2017-09-27
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:Crystal Structure of The IcmS-IcmW Complex in the Legionella Type IVb Secretion System
To Be Published
2JPU
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SOLUTION STRUCTURE OF NESG TARGET SSR10, ORF C02003 PROTEIN
Descriptor:Orf c02003 protein
Authors:Wu, Y., Singarapu, K.K., Zhang, Q., Eletski, A., Xu, D., Sukumaran, D., Parish, D., Wang, D., Jiang, M., Cunningham, K., Maglaqui, M., Owens, L., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T., Rost, B., Montelione, G., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-05-23
Release date:2007-07-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of NESG target SsR10, Orf c02003 protein
To be Published
2HG7
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SOLUTION NMR STRUCTURE OF PHAGE-LIKE ELEMENT PBSX PROTEIN XKDW, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR355
Descriptor:Phage-like element PBSX protein xkdW
Authors:Liu, G., Parish, D., Xu, D., Atreya, H., Sukumaran, D., Ho, C.K., Jiang, M., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-06-26
Release date:2006-08-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR structure of Phage-like element PBSX protein xkdW, Northeast Structural Genomics Consortium Target SR355
TO BE PUBLISHED
2JVM
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SOLUTION NMR STRUCTURE OF RHODOBACTER SPHAEROIDES PROTEIN RHOS4_26430. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RHR95
Descriptor:Uncharacterized protein
Authors:Eletsky, A., Sukumaran, D., Zhang, Q., Parish, D., Xu, D., Wang, H., Janjua, H., Owens, L., Xiao, R., Liu, J., Baran, M.C., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-09-21
Release date:2007-10-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR Structure of Rhodobacter sphaeroides protein RHOS4_26430.
To be Published
2HFI
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SOLUTION NMR STRUCTURE OF PROTEIN YPPE FROM BACILLUS SUBTILIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR213
Descriptor:Hypothetical protein yppE
Authors:Liu, G., Singarapu, K.K., Parish, D., Eletsky, A., Xu, D., Sukumaran, D., Ho, C.K., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-06-23
Release date:2006-07-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR structure of hypothetical protein yppE: Northeast Structural Genomics Consortium Target SR213
TO BE PUBLISHED
1PUZ
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SOLUTION NMR STRUCTURE OF PROTEIN NMA1147 FROM NEISSERIA MENINGITIDIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MR19
Descriptor:conserved hypothetical protein
Authors:Liu, G., Xu, D., Sukumaran, D.K., Chiang, Y., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2003-06-25
Release date:2004-06-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the hypothetical protein NMA1147 from Neisseria meningitidis reveals a distinct 5-helix bundle.
Proteins, 55, 2004
2GZO
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NMR STRUCTURE OF UPF0301 PROTEIN SO3346 FROM SHEWANELLA ONEIDENSIS: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SOR39
Descriptor:UPF0301 protein SO3346
Authors:Singarapu, K.K., Liu, G., Eletsky, A., Xu, D., Sukumaran, D.K., Mei, J., Xiao, R., Cunningham, K., Ma, L.C., Ritu, S., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-05-11
Release date:2006-06-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural Genomics Consortium target SOR39
To be Published
2HI6
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SOLUTION NMR STRUCTURE OF UPF0107 PROTEIN AF_0055, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET GR101
Descriptor:UPF0107 protein AF0055
Authors:Liu, G., Atreya, H., Xu, D., Sukumaran, D.K., Chen, C.X., Janjua, H., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-06-29
Release date:2006-08-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR structure of UPF0107 protein AF_0055, Northeast Structural Genomics Consortium Target GR101 (CASP Target)
To be Published
2K71
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STRUCTURE AND DYNAMICS OF A DNA GNRA HAIRPIN SOLVED VY HIGH-SENSITIVITY NMR WITH TWO INDEPENDENT CONVERGING METHODS, SIMULATED ANNEALING (DYANA) AND MESOSCOPIC MOLECULAR MODELLING (BCE/AMBER)
Descriptor:5'-D(*DGP*DCP*DGP*DAP*DAP*DAP*DGP*DC)-3'
Authors:Santini, G.P.H., Cognet, J.A.H., Xu, D., Singarapu, K.K., Herve du Penhoat, C.L.M.
Deposit date:2008-07-29
Release date:2009-07-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Nucleic acid folding determined by mesoscale modeling and NMR spectroscopy: solution structure of d(GCGAAAGC).
J.Phys.Chem.B, 113, 2009
3F5F
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CRYSTAL STRUCTURE OF HEPARAN SULFATE 2-O-SULFOTRANSFERASE FROM GALLUS GALLUS AS A MALTOSE BINDING PROTEIN FUSION.
Descriptor:Maltose-binding periplasmic protein, Heparan sulfate 2-O-sulfotransferase 1, ALPHA-D-GLUCOSE, ...
Authors:Bethea, H.N., Xu, D., Liu, J., Pedersen, L.C.
Deposit date:2008-11-03
Release date:2008-12-16
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Redirecting the substrate specificity of heparan sulfate 2-O-sulfotransferase by structurally guided mutagenesis.
Proc.Natl.Acad.Sci.USA, 105, 2008
3MXN
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CRYSTAL STRUCTURE OF THE RMI CORE COMPLEX
Descriptor:RecQ-mediated genome instability protein 1, RecQ-mediated genome instability protein 2, BENZAMIDINE
Authors:Hoadley, K.A., Xu, D., Xue, Y., Satyshur, K.A., Wang, W., Keck, J.L.
Deposit date:2010-05-07
Release date:2010-09-15
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure and cellular roles of the RMI core complex from the bloom syndrome dissolvasome.
Structure, 18, 2010
4I35
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THE CRYSTAL STRUCTURE OF SERRALYSIN
Descriptor:Serralysin, GLYCEROL, HEXANE, ...
Authors:Zou, M., Ran, T., Xu, D., Wang, W.
Deposit date:2012-11-24
Release date:2013-11-27
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:The crystal structure of serralysin
To be Published
4WJA
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CRYSTAL STRUCTURE OF PAXX
Descriptor:Uncharacterized protein C9orf142
Authors:Xing, M., Yang, M., Huo, W., Feng, F., Wei, L., Ning, S., Yan, Z., Li, W., Wang, Q., Hou, M., Dong, C., Guo, R., Gao, G., Ji, J., Lan, L., Liang, H., Xu, D.
Deposit date:2014-09-29
Release date:2015-03-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Interactome analysis identifies a new paralogue of XRCC4 in non-homologous end joining DNA repair pathway.
Nat Commun, 6, 2015
5CIO
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CRYSTAL STRUCTURE OF PQQF
Descriptor:pyrroloquinoline quinone biosynthesis protein PqqF, ZINC ION
Authors:Wei, Q., Xu, D., Ran, T., Wang, W.
Deposit date:2015-07-13
Release date:2016-06-08
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure and Function of PqqF Protein in the Pyrroloquinoline Quinone Biosynthetic Pathway
J.Biol.Chem., 291, 2016
5GXT
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CRYSTAL STRUCTURE OF PIGG
Descriptor:Maltose-binding periplasmic protein,PigG, MAGNESIUM ION
Authors:Zhang, F., Ran, T., Xu, D., Wang, W.
Deposit date:2016-09-20
Release date:2017-07-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.245 Å)
Cite:Crystal structure of MBP-PigG fusion protein and the essential function of PigG in the prodigiosin biosynthetic pathway in Serratia marcescens FS14.
Int. J. Biol. Macromol., 99, 2017
5GXV
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CRYSTAL STRUCTURE OF PIGG
Descriptor:Maltose-binding periplasmic protein,PigG, MAGNESIUM ION
Authors:Zhang, F., Ran, T., Xu, D., Wang, W.
Deposit date:2016-09-20
Release date:2017-07-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of MBP-PigG fusion protein and the essential function of PigG in the prodigiosin biosynthetic pathway in Serratia marcescens FS14.
Int. J. Biol. Macromol., 99, 2017
5WVM
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CRYSTAL STRUCTURE OF BAES COCRYSTALLIZED WITH 2 MM INDOLE
Descriptor:Maltose-binding periplasmic protein,Two-component system sensor kinase, SULFATE ION
Authors:Wang, W., Zhang, Y., Rang, T., Xu, D.
Deposit date:2016-12-26
Release date:2018-01-03
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the sensor domain of BaeS from Serratia marcescens FS14
Proteins, 85, 2017
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