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5D7W
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BU of 5d7w by Molmil
Crystal structure of serralysin
Descriptor: CALCIUM ION, GLYCEROL, Serralysin, ...
Authors:Wu, D, Ran, T, Xu, D.Q, Wang, W.
Deposit date:2015-08-14
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structure of a thermostable serralysin from Serratia sp. FS14 at 1.1 angstrom resolution.
Acta Crystallogr.,Sect.F, 72, 2016
7RM4
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BU of 7rm4 by Molmil
Neoantigen p53R175H-specific TCR 6-11 binds to p53R175H-HLA-A2
Descriptor: 6-11 T cell receptor alpha chain, 6-11 T cell receptor beta chain, Beta-2-microglobulin, ...
Authors:Wu, D, Mariuzza, R.A.
Deposit date:2021-07-26
Release date:2022-02-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:T cell receptors employ diverse strategies to target a p53 cancer neoantigen.
J.Biol.Chem., 298, 2022
6VQO
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BU of 6vqo by Molmil
T cell receptor-p53-HLA-A2 complex
Descriptor: Beta-2-microglobulin, MHC class I antigen, T-cell receptor 1a2, ...
Authors:Wu, D, Gallagher, D.T, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-05
Release date:2020-06-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
6VR1
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BU of 6vr1 by Molmil
Complex of HLA-A2, a class I MHC, with a p53 peptide
Descriptor: Beta-2-microglobulin, Cellular tumor antigen p53 peptide, MHC class I antigen
Authors:Wu, D, Pierce, B.G, Gallagher, D.T, Mariuzza, R.A.
Deposit date:2020-02-06
Release date:2020-06-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
6VTH
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BU of 6vth by Molmil
p53-specific T cell receptor
Descriptor: SULFATE ION, T-cell Receptor 12-6, Alfa chain, ...
Authors:Wu, D, Gallagher, D.T, Gowthaman, R, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-12
Release date:2020-06-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
3FCX
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BU of 3fcx by Molmil
Crystal structure of human esterase D
Descriptor: CALCIUM ION, MAGNESIUM ION, S-formylglutathione hydrolase
Authors:Wu, D, Li, Y, Song, G, Zhang, D, Shaw, N, Liu, Z.J.
Deposit date:2008-11-24
Release date:2008-12-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of human esterase D: a potential genetic marker of retinoblastoma
Faseb J., 23, 2009
9LSM
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BU of 9lsm by Molmil
The crystal structure of PDE5A with L9
Descriptor: 1-[(13~{S},15~{R})-4-bromanyl-15-(3-chloranyl-4-methoxy-phenyl)-8,12,16-triazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-1(17),2,4,6,8-pentaen-12-yl]ethanone, MAGNESIUM ION, SULFATE ION, ...
Authors:Wu, D, Huang, Y.-Y, Luo, H.-B.
Deposit date:2025-02-04
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Plasma metabolites-based drug design: Discovery of novel and highly selective phosphodiesterase 5 inhibitors
Chin.Chem.Lett., 2025
9LSL
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BU of 9lsl by Molmil
The crystal structure of PDE5A with L1
Descriptor: (13~{S},15~{R})-15-(3-chloranyl-4-methoxy-phenyl)-12-ethanoyl-8,12,16-triazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-1(17),2,4,6,8-pentaene-4-carbonitrile, MAGNESIUM ION, ZINC ION, ...
Authors:Wu, D, Huang, Y.-Y, Luo, H.-B.
Deposit date:2025-02-04
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Plasma metabolites-based drug design: Discovery of novel and highly selective phosphodiesterase 5 inhibitors
Chin.Chem.Lett., 2025
2FIK
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BU of 2fik by Molmil
Structure of a microbial glycosphingolipid bound to mouse CD1d
Descriptor: (2S,3R)-3-HYDROXY-2-(TETRADECANOYLAMINO)OCTADECYL ALPHA-D-GALACTOPYRANOSIDURONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wu, D, Zajonc, D.M.
Deposit date:2005-12-29
Release date:2006-03-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design of natural killer T cell activators: structure and function of a microbial glycosphingolipid bound to mouse CD1d.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2RJG
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BU of 2rjg by Molmil
Crystal structure of biosynthetic alaine racemase from Escherichia coli
Descriptor: Alanine racemase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
Authors:Wu, D, Hu, T, Zhang, L, Jiang, H, Shen, X.
Deposit date:2007-10-15
Release date:2008-07-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase from E. coli: Enzymatic characterization with crystal structure analysis
Protein Sci., 17, 2008
2RJH
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BU of 2rjh by Molmil
Crystal structure of biosynthetic alaine racemase in D-cycloserine-bound form from Escherichia coli
Descriptor: Alanine racemase, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, SULFATE ION
Authors:Wu, D, Hu, T, Zhang, L, Jiang, H, Shen, X.
Deposit date:2007-10-15
Release date:2008-07-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase from E. coli: Enzymatic characterization with crystal structure analysis
Protein Sci., 17, 2008
6YUZ
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BU of 6yuz by Molmil
Homodimeric structure of the rBAT complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neutral and basic amino acid transport protein rBAT
Authors:Wu, D, Safarian, S, Michel, H.
Deposit date:2020-04-27
Release date:2021-01-20
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis for amino acid exchange by a human heteromeric amino acid transporter.
Proc.Natl.Acad.Sci.USA, 117, 2020
6YUP
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BU of 6yup by Molmil
Heterotetrameric structure of the rBAT-b(0,+)AT1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neutral and basic amino acid transport protein rBAT, ...
Authors:Wu, D, Safarian, S, Michel, H.
Deposit date:2020-04-27
Release date:2021-01-20
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for amino acid exchange by a human heteromeric amino acid transporter.
Proc.Natl.Acad.Sci.USA, 117, 2020
7N1D
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BU of 7n1d by Molmil
SARS-CoV-2 YLQ peptide-specific TCR pYLQ7
Descriptor: pYLQ7 T cell receptor alpha chain, pYLQ7 T cell receptor beta chain
Authors:Wu, D, Mariuzza, R.A.
Deposit date:2021-05-27
Release date:2021-07-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
Nat Commun, 13, 2022
7N1F
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BU of 7n1f by Molmil
SARS-CoV-2 YLQ peptide-specific TCR pYLQ7 binds to YLQ-HLA-A2
Descriptor: Beta-2-microglobulin, MHC class I antigen, A-2 alpha chain, ...
Authors:Wu, D, Mariuzza, R.A.
Deposit date:2021-05-27
Release date:2021-07-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
Nat Commun, 13, 2022
7N1E
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BU of 7n1e by Molmil
SARS-CoV-2 RLQ peptide-specific TCR pRLQ3 binds to RLQ-HLA-A2
Descriptor: Beta-2-microglobulin, MHC class I antigen, A-2 alpha chain, ...
Authors:Wu, D, Mariuzza, R.A.
Deposit date:2021-05-27
Release date:2021-07-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
Nat Commun, 13, 2022
7N1C
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BU of 7n1c by Molmil
SARS-CoV-2 RLQ peptide-specific TCR pRLQ3
Descriptor: pRLQ3 T cell receptor alpha chain, pRLQ3 T cell receptor beta chain
Authors:Wu, D, Mariuzza, R.A.
Deposit date:2021-05-27
Release date:2021-07-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.881 Å)
Cite:Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
Nat Commun, 13, 2022
6YV1
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BU of 6yv1 by Molmil
Structure of human b(0,+)AT1
Descriptor: b(0,+)-type amino acid transporter 1
Authors:Wu, D, Safarian, S, Michel, H.
Deposit date:2020-04-27
Release date:2021-01-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for amino acid exchange by a human heteromeric amino acid transporter.
Proc.Natl.Acad.Sci.USA, 117, 2020
7N1A
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BU of 7n1a by Molmil
SARS-CoV-2 YLQ peptide binds to HLA-A2
Descriptor: Beta-2-microglobulin, MHC class I antigen, A-2 alpha chain, ...
Authors:Wu, D, Mariuzza, R.A.
Deposit date:2021-05-27
Release date:2021-07-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.065 Å)
Cite:Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
Nat Commun, 13, 2022
7N1B
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BU of 7n1b by Molmil
SARS-CoV-2 RLQ peptide binds to HLA-A2
Descriptor: Beta-2-microglobulin, MHC class I antigen, A-2 alpha chain, ...
Authors:Wu, D, Mariuzza, R.A.
Deposit date:2021-05-27
Release date:2021-07-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
Nat Commun, 13, 2022
6VRN
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BU of 6vrn by Molmil
T cell receptor-p53-HLA-A2 complex
Descriptor: Beta-2-microglobulin, Cellular tumor antigen p53 peptide, MHC class I antigen, ...
Authors:Wu, D, Gallagher, D.T, Gowthaman, R, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-08
Release date:2020-06-17
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
6VTC
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BU of 6vtc by Molmil
p53-specific T cell receptor
Descriptor: T-cell Receptor 1a2, p53-specific T cell receptor, B-chain
Authors:Wu, D, Gallagher, D.T, Gowthaman, R, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-12
Release date:2020-06-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
6VRM
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BU of 6vrm by Molmil
T cell receptor-p53-HLA-A2 complex
Descriptor: Beta-2-microglobulin, Cellular tumor antigen p53 peptide, MHC class I antigen, ...
Authors:Wu, D, Gallagher, D.T, Gowthaman, R, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-08
Release date:2020-06-17
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
6VR5
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BU of 6vr5 by Molmil
Complex of HLA-A2, a class I MHC, with a p53 peptide
Descriptor: Beta-2-microglobulin, Cellular tumor antigen p53 peptide, MHC class I antigen
Authors:Wu, D, Gallagher, D.T, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-06
Release date:2020-06-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
7ZDS
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BU of 7zds by Molmil
IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) (Dataset-18)
Descriptor: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD
Authors:Wu, D, Safarian, S.
Deposit date:2022-03-29
Release date:2023-04-19
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023

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