Author results

1LV7
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CRYSTAL STRUCTURE OF THE AAA DOMAIN OF FTSH
Descriptor:FtsH, SULFATE ION
Authors:Krzywda, S., Brzozowski, A.M., Verma, C., Karata, K., Ogura, T., Wilkinson, A.J.
Deposit date:2002-05-26
Release date:2002-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of the AAA domain of the ATP-dependent protease FtsH of Escherichia coli at 1.5 A resolution.
Structure, 10, 2002
3J7I
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STRUCTURE OF ALPHA- AND BETA- TUBULIN IN GMPCPP-MICROTUBULES
Descriptor:Tubulin alpha-1A chain, Tubulin beta chain, MAGNESIUM ION, ...
Authors:Yajima, H., Ogura, T., Nitta, R., Okada, Y., Sato, C., Hirokawa, N.
Deposit date:2014-07-01
Release date:2014-12-10
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Conformational changes in tubulin in GMPCPP and GDP-taxol microtubules observed by cryoelectron microscopy
J.Cell Biol., 198, 2012
3WG7
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A 1.9 ANGSTROM RADIATION DAMAGE FREE X-RAY STRUCTURE OF LARGE (420KDA) PROTEIN BY FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Hirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., Muramoto, K., Kawahara, T., Tsukihara, T., Yamashita, E., Tono, K., Ueno, G., Hikima, T., Murakami, H., Inubushi, Y., Yabashi, M., Ishikawa, T., Yamamoto, M., Ogura, T., Sugimoto, H., Shen, J.R., Yoshikawa, S., Ago, H.
Deposit date:2013-07-29
Release date:2014-04-30
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Nat.Methods, 2014
5X19
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CO BOUND CYTOCHROME C OXIDASE AT 100 MICRO SEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1B
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CO BOUND CYTOCHROME C OXIDASE AT 20 NSEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1F
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CO BOUND CYTOCHROME C OXIDASE WITHOUT PUMP LASER IRRADIATION AT 278K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
2ZXW
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (1-S X-RAY EXPOSURE DATASET)
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Aoyama, H., Muramoto, K., Shinzawa-Itoh, K., Hirata, K., Yamashita, E., Tsukihara, T., Ogura, T., Yoshikawa, S.
Deposit date:2009-01-08
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
Proc.Natl.Acad.Sci.USA, 106, 2009
3ABL
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (15-S X-RAY EXPOSURE DATASET)
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Aoyama, H., Muramoto, K., Shinzawa-Itoh, K., Yamashita, E., Tsukihara, T., Ogura, T., Yoshikawa, S.
Deposit date:2009-12-16
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
Proc.Natl.Acad.Sci.USA, 106, 2009
3ABM
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (200-S X-RAY EXPOSURE DATASET)
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Aoyama, H., Muramoto, K., Shinzawa-Itoh, K., Yamashita, E., Tsukihara, T., Ogura, T., Yoshikawa, S.
Deposit date:2009-12-16
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
Proc.Natl.Acad.Sci.USA, 106, 2009
5XEC
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HETERODIMER CONSTRUCTED FROM PA CYT C551-HT CYT C552 AND HT CYT C552-PA CYT C551 CHIMERIC PROTEINS
Descriptor:Cytochrome c-552,Cytochrome c-551, Cytochrome c-551,Cytochrome c-552, HEME C
Authors:Zhang, M., Nakanishi, T., Yamanaka, M., Nagao, S., Yanagisawa, S., Shomura, Y., Shibata, N., Ogura, T., Higuchi, Y., Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
5XED
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HETERODIMER CONSTRUCTED FROM M61A PA CYT C551-HT CYT C552 AND HT CYT C552-PA CYT C551 CHIMERIC PROTEINS
Descriptor:Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C
Authors:Zhang, M., Nakanishi, T., Yamanaka, M., Nagao, S., Yanagisawa, S., Shomura, Y., Shibata, N., Ogura, T., Higuchi, Y., Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
3J6H
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NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN COMPLEXED WITH GMPCPP-MICROTUBULE
Descriptor:Tubulin alpha-1A chain, Tubulin beta chain, Kinesin heavy chain isoform 5C, ...
Authors:Morikawa, M., Yajima, H., Nitta, R., Inoue, S., Ogura, T., Sato, C., Hirokawa, N.
Deposit date:2014-02-21
Release date:2015-04-01
Method:ELECTRON MICROSCOPY (8.1 Å)
Cite:X-ray and Cryo-EM structures reveal mutual conformational changes of Kinesin and GTP-state microtubules upon binding
Embo J., 2015
2ZAW
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CRYSTAL STRUCTURE OF FERRIC CYTOCHROME P450CAM RECONSTITUTED WITH 6-METHYL-6-DEPROPIONATED HEMIN
Descriptor:Cytochrome P450-cam, POTASSIUM ION, CHLORIDE ION, ...
Authors:Harada, K., Sakurai, K., Shimada, H., Tsukihara, T., Hayashi, T.
Deposit date:2007-10-11
Release date:2008-01-01
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Evaluation of the functional role of the heme-6-propionate side chain in cytochrome P450cam
J.Am.Chem.Soc., 130, 2008
2ZAX
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CRYSTAL STRUCTURE OF FERRIC CYTOCHROME P450CAM
Descriptor:Cytochrome P450-cam, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Sakurai, K., Shimada, H., Harada, K., Hayashi, T., Tsukihara, T.
Deposit date:2007-10-11
Release date:2008-01-01
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Evaluation of the functional role of the heme-6-propionate side chain in cytochrome P450cam
J.Am.Chem.Soc., 130, 2008
2E7E
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BENT-BINDING OF CYANIDE TO THE HEME IRON IN RAT HEME OXYGENASE-1
Descriptor:Heme oxygenase 1, CYANIDE ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M., Fukuyama, K.
Deposit date:2007-01-09
Release date:2007-06-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Alternative cyanide-binding modes to the haem iron in haem oxygenase
Acta Crystallogr.,Sect.F, 63, 2007
3WRD
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CRYSTAL STRUCTURE OF THE KIF5C MOTOR DOMAIN WITHOUT ANY NUCLEOTIDE
Descriptor:Kinesin heavy chain isoform 5C, SULFATE ION
Authors:Inoue, S., Nitta, R., Hirokawa, N.
Deposit date:2014-02-21
Release date:2015-04-01
Last modified:2015-07-29
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:X-ray and Cryo-EM structures reveal mutual conformational changes of Kinesin and GTP-state microtubules upon binding
Embo J., 34, 2015
3X2T
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CRYSTAL STRUCTURE OF THE KIF5C MOTOR DOMAIN WITH ADP
Descriptor:Kinesin heavy chain isoform 5C, ADENOSINE-5'-DIPHOSPHATE
Authors:Inoue, S., Nitta, R., Hirokawa, N.
Deposit date:2015-01-02
Release date:2015-04-01
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:X-ray and Cryo-EM structures reveal mutual conformational changes of Kinesin and GTP-state microtubules upon binding
Embo J., 34, 2015
5AYK
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CRYSTAL STRUCTURE OF ERDJ5 FORM I
Descriptor:DnaJ homolog subfamily C member 10, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, CHLORIDE ION
Authors:Watanabe, S., Maegawa, K., Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5AYL
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CRYSTAL STRUCTURE OF ERDJ5 FORM II
Descriptor:DnaJ homolog subfamily C member 10, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
Authors:Watanabe, S., Maegawa, K., Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
2Y69
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BOVINE HEART CYTOCHROME C OXIDASE RE-REFINED WITH MOLECULAR OXYGEN
Descriptor:CYTOCHROME C OXIDASE SUBUNIT 1, CYTOCHROME C OXIDASE SUBUNIT 2, CYTOCHROME C OXIDASE SUBUNIT 3, ...
Authors:Kaila, V.R.I., Oksanen, E., Goldman, A., Verkhovsky, M.I., Sundholm, D., Wikstrom, M.
Deposit date:2011-01-20
Release date:2011-02-23
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A Combined Quantum Chemical and Crystallographic Study on the Oxidized Binuclear Center of Cytochrome C Oxidase.
Biochim.Biophys.Acta, 1807, 2011