Author results

6N9E
  • Download 6n9e
  • View 6n9e
Molmil generated image of 6n9e
CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH A SHORT SUBSTRATE MIMIC CC-PMN AND BOUND TO MRNA AND P-SITE TRNA AT 3.7A RESOLUTION
Descriptor:23S Ribosomal RNA, 5S Ribosomal RNA, 50S Ribosomal Protein L2, ...
Authors:Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.
Deposit date:2018-12-03
Release date:2018-12-12
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res., 2018
6N9F
  • Download 6n9f
  • View 6n9f
Molmil generated image of 6n9f
CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH A SHORT SUBSTRATE MIMIC ACCA-DPHE AND BOUND TO MRNA AND P-SITE TRNA AT 3.7A RESOLUTION
Descriptor:23S Ribosomal RNA, 5S Ribosomal RNA, 50S Ribosomal Protein L2, ...
Authors:Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.
Deposit date:2018-12-03
Release date:2018-12-12
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res., 2018
5Y87
  • Download 5y87
  • View 5y87
Molmil generated image of 5y87
STRUCTURE-BASED INSIGHTS INTO SELF-CLEAVAGE BY A FOUR-WAY JUNCTIONAL TWISTER-SISTER RIBOZYME
Descriptor:RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3'), DNA/RNA (50-MER), MANGANESE (II) ION
Authors:Zheng, L., Micura, R.L., Ren, A.
Deposit date:2017-08-19
Release date:2017-11-22
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.132 Å)
Cite:Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun, 8, 2017
5Y85
  • Download 5y85
  • View 5y85
Molmil generated image of 5y85
STRUCTURE-BASED INSIGHTS INTO SELF-CLEAVAGE BY A FOUR-WAY JUNCTIONAL TWISTER-SISTER RIBOZYME
Descriptor:RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3'), DNA/RNA (50-MER), MAGNESIUM ION
Authors:Zheng, L., Micura, R.L., Ren, A.
Deposit date:2017-08-18
Release date:2017-11-22
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun, 8, 2017
5VXB
  • Download 5vxb
  • View 5vxb
Molmil generated image of 5vxb
CRYSTAL STRUCTURE OF CAULOBACTER CRESCENTUS PROXP-ALA AT 1.69 ANGSTROM
Descriptor:ProXp-ala
Authors:Foster, M.P., Musier-Forsyth, K., Nakanishi, K., Ma, X.
Deposit date:2017-05-23
Release date:2017-08-09
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Conformational and chemical selection by a trans-acting editing domain.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NQI
  • Download 5nqi
  • View 5nqi
Molmil generated image of 5nqi
E.COLI 16S RRNA SARCIN-RICIN LOOP CONTAINING A 5-HYDROXYMETHYLCYTOSINE MODIFICATION
Descriptor:E.Coli 27-mer SRL RNA
Authors:Ennifar, E., Micura, R.
Deposit date:2017-04-20
Release date:2017-07-26
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (0.851 Å)
Cite:Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine.
J. Org. Chem., 82, 2017
5MRX
  • Download 5mrx
  • View 5mrx
Molmil generated image of 5mrx
27-NT SRL WITH A 5-HYDROXYMETHYL CYTIDINE MODIFICATION
Descriptor:RNA (27-MER)
Authors:Ennifar, E., Micura, R.
Deposit date:2016-12-28
Release date:2018-01-17
Method:X-RAY DIFFRACTION (0.851 Å)
Cite:Xray structure of 5hmrc-modified RNA at atomic resolution
To Be Published
5TGM
  • Download 5tgm
  • View 5tgm
Molmil generated image of 5tgm
CRYSTAL STRUCTURE OF THE S.CEREVISIAE 80S RIBOSOME IN COMPLEX WITH THE A-SITE BOUND AMINOACYL-TRNA ANALOG ACCA-PRO
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J., Yusupov, M.
Deposit date:2016-09-28
Release date:2017-01-18
Last modified:2017-01-25
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Molecular insights into protein synthesis with proline residues.
EMBO Rep., 17, 2016
5TGA
  • Download 5tga
  • View 5tga
Molmil generated image of 5tga
CRYSTAL STRUCTURE OF THE S.CEREVISIAE 80S RIBOSOME IN COMPLEX WITH THE A-SITE BOUND AMINOACYL-TRNA ANALOG ACCA-PRO
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J.
Deposit date:2016-09-27
Release date:2016-11-23
Last modified:2016-12-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Molecular insights into protein synthesis with proline residues.
EMBO Rep., 17, 2016
5LYB
  • Download 5lyb
  • View 5lyb
Molmil generated image of 5lyb
CRYSTAL STRUCTURE OF THE S.CEREVISIAE 80S RIBOSOME IN COMPLEX WITH THE A-SITE BOUND AMINOACYL-TRNA ANALOG ACCPMN
Descriptor:18S rRNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J.
Deposit date:2016-09-26
Release date:2016-11-23
Last modified:2016-12-14
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Molecular insights into protein synthesis with proline residues.
EMBO Rep., 17, 2016
5K7C
  • Download 5k7c
  • View 5k7c
Molmil generated image of 5k7c
THE NATIVE STRUCTURE OF NATIVE PISTOL RIBOZYME
Descriptor:RNA 47-MER, DNA/RNA 11-MER, MAGNESIUM ION
Authors:Ren, A., Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7D
  • Download 5k7d
  • View 5k7d
Molmil generated image of 5k7d
THE STRUCTURE OF NATIVE PISTOL RIBOZYME, BOUND TO IRIDIUM
Descriptor:RNA 47-MER, DNA/RNA 11-MER, IRIDIUM HEXAMMINE ION, ...
Authors:Ren, A., Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7E
  • Download 5k7e
  • View 5k7e
Molmil generated image of 5k7e
THE STRUCTURE OF PISTOL RIBOZYME, SOAKED WITH MN2+
Descriptor:RNA 47-MER, DNA/RNA 11-MER, MANGANESE (II) ION
Authors:Ren, A., Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (3.27 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5DUN
  • Download 5dun
  • View 5dun
Molmil generated image of 5dun
THE CRYSTAL STRUCTURE OF OME SUBSTITUTED TWISTER RIBOZYME
Descriptor:RNA (54-MER), MAGNESIUM ION, POTASSIUM ION
Authors:Ren, A., Patel, D.J., Micura, R., Rajashankar, K.R.
Deposit date:2015-09-19
Release date:2015-10-28
Last modified:2016-01-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.
Angew.Chem.Int.Ed.Engl., 54, 2015
5DGV
  • Download 5dgv
  • View 5dgv
Molmil generated image of 5dgv
COMPLEX OF YEAST 80S RIBOSOME WITH HYPUSINE-CONTAINING/NON-MODIFIED EIF5A AND/OR A PEPTIDYL-TRNA ANALOG
Descriptor:Saccharomyces cerevisiae S288c RDN37-1 miscRNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
Deposit date:2015-08-28
Release date:2016-12-14
Last modified:2017-03-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published
5DGE
  • Download 5dge
  • View 5dge
Molmil generated image of 5dge
COPING WITH PROLINE STALLING: STRUCTURAL BASIS OF HYPUSINE-INDUCED PROTEIN SYNTHESIS BY THE EUKARYOTIC RIBOSOME
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
Deposit date:2015-08-27
Release date:2017-01-25
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published
5DGF
  • Download 5dgf
  • View 5dgf
Molmil generated image of 5dgf
COMPLEX OF YEAST 80S RIBOSOME WITH HYPUSINE-CONTAINING/NON-MODIFIED EIF5A AND/OR A PEPTIDYL-TRNA ANALOG
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
Deposit date:2015-08-27
Release date:2016-12-14
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published
5DC3
  • Download 5dc3
  • View 5dc3
Molmil generated image of 5dc3
COMPLEX OF YEAST 80S RIBOSOME WITH NON-MODIFIED EIF5A
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
Deposit date:2015-08-23
Release date:2016-06-01
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Crystal Structure of Hypusine-Containing Translation Factor eIF5A Bound to a Rotated Eukaryotic Ribosome.
J.Mol.Biol., 428, 2016
5DAT
  • Download 5dat
  • View 5dat
Molmil generated image of 5dat
COMPLEX OF YEAST 80S RIBOSOME WITH HYPUSINE-CONTAINING EIF5A
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
Deposit date:2015-08-20
Release date:2016-08-31
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published
5D99
  • Download 5d99
  • View 5d99
Molmil generated image of 5d99
3DW4 REDETERMINED BY DIRECT METHODS STARTING FROM RANDOM PHASE ANGLES
Descriptor:RNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNA, GLYCEROL
Authors:Mooers, B.H.M.
Deposit date:2015-08-18
Release date:2016-04-13
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry
Acta Crystallogr.,Sect.D, 72, 2016
4Y27
  • Download 4y27
  • View 4y27
Molmil generated image of 4y27
E.COLI 23S SARCIN-RICIL LOOP, MODIFIED WITH A 2-ME ON G2661 AND A METHYLPHOSPHONATE ON A2662
Descriptor:27-mer SRL RNA
Authors:Ennifar, E., Micura, R., Fluer, S.
Deposit date:2015-02-09
Release date:2015-11-18
Method:X-RAY DIFFRACTION (0.998 Å)
Cite:Role of a ribosomal RNA phosphate oxygen during the EF-G-triggered GTP hydrolysis.
Proc.Natl.Acad.Sci.USA, 112, 2015
4RGE
  • Download 4rge
  • View 4rge
Molmil generated image of 4rge
CRYSTAL STRUCTURE OF THE IN-LINE ALIGNED ENV22 TWISTER RIBOZYME
Descriptor:env22 twister ribozyme, MAGNESIUM ION
Authors:Ren, A., Rajashankar, K.R., Simanshu, D., Patel, D.
Deposit date:2014-09-30
Release date:2014-12-03
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
4RGF
  • Download 4rgf
  • View 4rgf
Molmil generated image of 4rgf
CRYSTAL STRUCTURE OF THE IN-LINE ALIGNED ENV22 TWISTER RIBOZYME SOAKED WITH MN2+
Descriptor:env22 twister ribozyme, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Ren, A., Rajashankar, K.R., Simanshu, D., Patel, D.
Deposit date:2014-09-30
Release date:2014-12-03
Method:X-RAY DIFFRACTION (3.2008 Å)
Cite:In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
4NXH
  • Download 4nxh
  • View 4nxh
Molmil generated image of 4nxh
2'-TRIFLUOROMETHYLTHIOURIDINE-MODIFIED E. COLI 23S RRNA SARCIN RICIN LOOP
Descriptor:23S ribosomal RNA Sarcin Ricin Loop, GLYCEROL, SULFATE ION
Authors:Ennifar, E., Micura, R., Kosutic, M.
Deposit date:2013-12-09
Release date:2014-12-10
Method:X-RAY DIFFRACTION (1.158 Å)
Cite:2'-Trifluoromethylthio-modified RNA: synthesis, X-ray structure, thermodynamic analysis, and applications
To be Published
4NMG
  • Download 4nmg
  • View 4nmg
Molmil generated image of 4nmg
2'-TRIFLUOROMETHYLTHIO-2'-DEOXYURIDINE-MODIFIED SRL
Descriptor:23S ribosomal RNA Sarcin Ricin Loop
Authors:Ennifar, E., Micura, R., Kosutic, M.
Deposit date:2013-11-15
Release date:2014-11-19
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:2'-Trifluoromethylthio-modified RNA: synthesis, X-ray structure, thermodynamic analysis, and applications
To be Published
<12>
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan