Author results

1IQ8
  • Download 1iq8
  • View 1iq8
Molmil generated image of 1iq8
CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE FROM PYROCOCCUS HORIKOSHII
Descriptor:ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE, ZINC ION, MAGNESIUM ION
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-07-09
Release date:2002-05-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT7
  • Download 1it7
  • View 1it7
Molmil generated image of 1it7
CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH GUANINE
Descriptor:Archaeosine tRNA-guanine transglycosylase, ZINC ION, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT8
  • Download 1it8
  • View 1it8
Molmil generated image of 1it8
CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH ARCHAEOSINE PRECURSOR, PREQ0
Descriptor:archaeosine tRNA-guanine transglycosylase, ZINC ION, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1J2B
  • Download 1j2b
  • View 1j2b
Molmil generated image of 1j2b
CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH LAMBDA-FORM TRNA(VAL)
Descriptor:tRNA(Val), Archaeosine tRNA-guanine transglycosylase, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-29
Release date:2003-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme
Cell(Cambridge,Mass.), 113, 2003
5I20
  • Download 5i20
  • View 5i20
Molmil generated image of 5i20
CRYSTAL STRUCTURE OF PROTEIN
Descriptor:Uncharacterized protein, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, SULFATE ION
Authors:Ishitani, R., Nureki, O.
Deposit date:2016-02-08
Release date:2016-06-01
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for amino acid export by DMT superfamily transporter YddG.
Nature, 534, 2016
3X3B
  • Download 3x3b
  • View 3x3b
Molmil generated image of 3x3b
CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN ACIDIC STATE
Descriptor:Sodium pumping rhodopsin, RETINAL, OLEIC ACID, ...
Authors:Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
Deposit date:2015-01-18
Release date:2015-04-08
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
3X3C
  • Download 3x3c
  • View 3x3c
Molmil generated image of 3x3c
CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN NEUTRAL STATE
Descriptor:Sodium pumping rhodopsin, RETINAL, OLEIC ACID
Authors:Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
Deposit date:2015-01-18
Release date:2015-04-08
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
1UDZ
  • Download 1udz
  • View 1udz
Molmil generated image of 1udz
ISOLEUCYL-TRNA SYNTHETASE EDITING DOMAIN
Descriptor:Isoleucyl-tRNA synthetase
Authors:Fukunaga, R., Fukai, S., Ishitani, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-08
Release date:2004-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.
J.Biol.Chem., 279, 2004
1UE0
  • Download 1ue0
  • View 1ue0
Molmil generated image of 1ue0
ISOLEUCYL-TRNA SYNTHETASE EDITING DOMAIN COMPLEXED WITH L-VALINE
Descriptor:Isoleucyl-tRNA synthetase, VALINE
Authors:Fukunaga, R., Fukai, S., Ishitani, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-08
Release date:2004-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.
J.Biol.Chem., 279, 2004
3WTR
  • Download 3wtr
  • View 3wtr
Molmil generated image of 3wtr
CRYSTAL STRUCTURE OF E. COLI YFCM BOUND TO CO(II)
Descriptor:Uncharacterized protein, COBALT (II) ION
Authors:Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-19
Release date:2015-04-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation
Nucleic Acids Res., 42, 2014
3WUH
  • Download 3wuh
  • View 3wuh
Molmil generated image of 3wuh
QRI7 AND AMP COMPLEX
Descriptor:tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial, ZINC ION, ...
Authors:Tominaga, T., Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-24
Release date:2014-09-17
Method:X-RAY DIFFRACTION (2.937 Å)
Cite:Structure of Saccharomyces cerevisiae mitochondrial Qri7 in complex with AMP
ACTA CRYSTALLOGR.,SECT.F, 70, 2014
4MKP
  • Download 4mkp
  • View 4mkp
Molmil generated image of 4mkp
CRYSTAL STRUCTURE OF HUMAN CGAS APO FORM
Descriptor:Cyclic GMP-AMP synthase, ZINC ION
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2013-09-05
Release date:2013-10-30
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
Plos One, 8, 2013
4PDN
  • Download 4pdn
  • View 4pdn
Molmil generated image of 4pdn
CRYSTAL STRUCTURE OF E. COLI YFCM
Descriptor:Uncharacterized protein, MAGNESIUM ION
Authors:Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-19
Release date:2015-03-04
Last modified:2015-04-08
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation.
Nucleic Acids Res., 42, 2014
4XJ1
  • Download 4xj1
  • View 4xj1
Molmil generated image of 4xj1
CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV APO FORM
Descriptor:Cyclic AMP-GMP synthase, 1,2-ETHANEDIOL
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ3
  • Download 4xj3
  • View 4xj3
Molmil generated image of 4xj3
CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV GTP BOUND FORM
Descriptor:Cyclic AMP-GMP synthase, MAGNESIUM ION, 1,2-ETHANEDIOL, ...
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ4
  • Download 4xj4
  • View 4xj4
Molmil generated image of 4xj4
CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV 3'-DEOXY ATP BOUND FORM
Descriptor:Cyclic AMP-GMP synthase, 1,2-ETHANEDIOL, 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.596 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ5
  • Download 4xj5
  • View 4xj5
Molmil generated image of 4xj5
CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV 3'-DEOXY GTP BOUND FORM
Descriptor:Cyclic AMP-GMP synthase, MAGNESIUM ION, 1,2-ETHANEDIOL, ...
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.552 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ6
  • Download 4xj6
  • View 4xj6
Molmil generated image of 4xj6
CRYSTAL STRUCTURE OF ESCHERICHIA COLI DNCV 3'-DEOXY GTP BOUND FORM
Descriptor:VC0179-like protein, MAGNESIUM ION, 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
5AYM
  • Download 5aym
  • View 5aym
Molmil generated image of 5aym
CRYSTAL STRUCTURE OF A BACTERIAL HOMOLOGUE OF IRON TRANSPORTER FERROPORTIN IN OUTWARD-FACING STATE WITH SOAKED IRON
Descriptor:Solute carrier family 39 (Iron-regulated transporter), FE (II) ION
Authors:Taniguchi, R., Kato, H.E., Font, J., Deshpande, C.N., Ishitani, R., Jormakka, M., Nureki, O.
Deposit date:2015-08-25
Release date:2015-11-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin
Nat Commun, 6, 2015
5AYN
  • Download 5ayn
  • View 5ayn
Molmil generated image of 5ayn
CRYSTAL STRUCTURE OF A BACTERIAL HOMOLOGUE OF IRON TRANSPORTER FERROPORTIN IN OUTWARD-FACING STATE
Descriptor:Solute carrier family 39 (Iron-regulated transporter), POTASSIUM ION, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Taniguchi, R., Kato, H.E., Font, J., Deshpande, C.N., Ishitani, R., Jormakka, M., Nureki, O.
Deposit date:2015-08-25
Release date:2015-11-04
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin
Nat Commun, 6, 2015
5AYO
  • Download 5ayo
  • View 5ayo
Molmil generated image of 5ayo
CRYSTAL STRUCTURE OF A BACTERIAL HOMOLOGUE OF IRON TRANSPORTER FERROPORTIN IN INWARD-FACING STATE
Descriptor:Solute carrier family 39 (Iron-regulated transporter), POTASSIUM ION, ZINC ION, ...
Authors:Taniguchi, R., Kato, H.E., Font, J., Deshpande, C.N., Ishitani, R., Jormakka, M., Nureki, O.
Deposit date:2015-08-25
Release date:2015-11-04
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin
Nat Commun, 6, 2015
5GVR
  • Download 5gvr
  • View 5gvr
Molmil generated image of 5gvr
CRYSTAL STRUCTURE OF THE DDX41 DEAD DOMAIN IN AN APO CLOSED FORM
Descriptor:Probable ATP-dependent RNA helicase DDX41, (2S)-2-hydroxybutanedioic acid
Authors:Omura, H., Oikawa, D., Nakane, T., Kato, M., Ishii, R., Goto, Y., Suga, H., Ishitani, R., Tokunaga, F., Nureki, O.
Deposit date:2016-09-06
Release date:2016-10-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide
Sci Rep, 6, 2016
5GVS
  • Download 5gvs
  • View 5gvs
Molmil generated image of 5gvs
CRYSTAL STRUCTURE OF THE DDX41 DEAD DOMAIN IN AN APO OPEN FORM
Descriptor:Probable ATP-dependent RNA helicase DDX41
Authors:Omura, H., Oikawa, D., Nakane, T., Kato, M., Ishii, R., Goto, Y., Suga, H., Ishitani, R., Tokunaga, F., Nureki, O.
Deposit date:2016-09-06
Release date:2016-10-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide
Sci Rep, 6, 2016
5XSZ
  • Download 5xsz
  • View 5xsz
Molmil generated image of 5xsz
CRYSTAL STRUCTURE OF ZEBRAFISH LYSOPHOSPHATIDIC ACID RECEPTOR LPA6
Descriptor:Lysophosphatidic acid receptor 6a,Endolysin,Lysophosphatidic acid receptor 6a, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Taniguchi, R., Nishizawa, T., Ishitani, R., Nureki, O.
Deposit date:2017-06-16
Release date:2017-08-16
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA6
Nature, 548, 2017
6IJE
  • Download 6ije
  • View 6ije
Molmil generated image of 6ije
CRYSTAL STRUCTURE OF THE TYPE VI AMIDASE IMMUNITY (TAI4) FROM AGROBACTERIUM TUMEFACIENS
Descriptor:Tai4, 1,2-ETHANEDIOL
Authors:Fukuhara, S., Nakane, T., Yamashita, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2018-10-09
Release date:2018-12-19
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.
Acta Crystallogr F Struct Biol Commun, 74, 2018
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan