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7RKC
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BU of 7rkc by Molmil
Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633
Descriptor: ACETATE ION, D_3_633
Authors:Kennedy, M.A, Stoddard, B.L, Hicks, D.R, Bera, A.K.
Deposit date:2021-07-22
Release date:2022-05-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
7RMY
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BU of 7rmy by Molmil
De Novo designed tunable protein pockets, D_3-337
Descriptor: De Novo designed tunable homodimer, D_3-337
Authors:Bera, A.K, Hicks, D.R, Kang, A, Sankaran, B, Baker, D.
Deposit date:2021-07-28
Release date:2022-08-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
7RMX
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BU of 7rmx by Molmil
Structure of De Novo designed tunable symmetric protein pockets
Descriptor: Tunable symmetric protein, D_3_212
Authors:Bera, A.K, Hicks, D.R, Kang, A, Sankaran, B, Baker, D.
Deposit date:2021-07-28
Release date:2022-08-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
5U05
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BU of 5u05 by Molmil
Cryo-EM structure of the E. coli CTP synthase tetramer
Descriptor: CTP synthase
Authors:Lynch, E.M, Hicks, D.R, Kollman, J.M.
Deposit date:2016-11-22
Release date:2017-04-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Human CTP synthase filament structure reveals the active enzyme conformation.
Nat. Struct. Mol. Biol., 24, 2017
8F6R
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BU of 8f6r by Molmil
CryoEM structure of designed modular protein oligomer C6-79
Descriptor: De novo designed oligomeric protein C6-79
Authors:Redler, R.L, Edman, N.I, Baker, D, Ekiert, D, Bhabha, G.
Deposit date:2022-11-17
Release date:2023-11-29
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies.
Cell, 187, 2024
8F6Q
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BU of 8f6q by Molmil
CryoEM structure of designed modular protein oligomer C8-71
Descriptor: C8-71
Authors:Redler, R.L, Edman, N.I, Baker, D, Ekiert, D, Bhabha, G.
Deposit date:2022-11-17
Release date:2023-11-29
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies.
Biorxiv, 2023
8DT0
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BU of 8dt0 by Molmil
Scaffolding protein functional sites using deep learning
Descriptor: Scaffolding protein functional sites
Authors:Bera, A.K, Watson, J, Baker, D.
Deposit date:2022-07-24
Release date:2022-08-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Scaffolding protein functional sites using deep learning.
Science, 377, 2022
8E55
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BU of 8e55 by Molmil
Design of Diverse Asymmetric Pockets in de novo Homo-oligomeric Proteins
Descriptor: SG135
Authors:Gerben, S, Borst, A.J, Baker, D.
Deposit date:2022-08-19
Release date:2023-01-25
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.85 Å)
Cite:Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins.
Biochemistry, 62, 2023
8GLT
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BU of 8glt by Molmil
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Descriptor: C2-chlorophyll-comp_O32-15_ctermHis, polyalanine model, C3-comp_O32-15
Authors:Redler, R.L, Ennist, N.M, Wang, S, Baker, D, Ekiert, D.C, Bhabha, G.
Deposit date:2023-03-23
Release date:2024-03-27
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 20, 2024
8G4K
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BU of 8g4k by Molmil
Complex of TbRII mini protein binder bound to the TbRII ECD
Descriptor: 5HCS_TGFBR2_1, SULFATE ION, TGF-beta receptor type-2
Authors:Schwartze, T.S, Hinck, A.P.
Deposit date:2023-02-09
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Computational Design of High Affinity Binders to Convex Protein Target Sites
To be Published
8GAB
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BU of 8gab by Molmil
Crystal structure of CTLA-4 in complex with a high affinity CTLA-4 binder
Descriptor: CTLA-4 binder, Cytotoxic T-lymphocyte protein 4, POTASSIUM ION
Authors:Yang, W, Almo, S.C, Ghosh, A.
Deposit date:2023-02-22
Release date:2024-08-21
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Design of High Affinity Binders to Convex Protein Target Sites.
Biorxiv, 2024
8GAC
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BU of 8gac by Molmil
Crystal structure of a high affinity CTLA-4 binder
Descriptor: 1,2-ETHANEDIOL, CTLA-4 binder
Authors:Yang, W, Almo, S.C, Ghosh, A.
Deposit date:2023-02-22
Release date:2024-08-21
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design of High Affinity Binders to Convex Protein Target Sites.
Biorxiv, 2024
8GAD
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BU of 8gad by Molmil
Crystal structure of a high affinity PD-L1 binder
Descriptor: INDOLE, PD-L1 binder
Authors:Yang, W, Almo, S.C, Ghosh, A.
Deposit date:2023-02-22
Release date:2024-08-21
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Design of High Affinity Binders to Convex Protein Target Sites.
Biorxiv, 2024
8VEI
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BU of 8vei by Molmil
De novo designed colic acid binder CHD_r1
Descriptor: CHD_r1
Authors:Bera, A.K, An, L, Baker, D.
Deposit date:2023-12-19
Release date:2024-07-17
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Binding and sensing diverse small molecules using shape-complementary pseudocycles.
Science, 385, 2024
8VEJ
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BU of 8vej by Molmil
De novo designed cholic acid binder: CHD_buttress
Descriptor: CHD_buttress, CHOLIC ACID
Authors:Bera, A.K, Tran, L, Kang, A, Baker, D.
Deposit date:2023-12-19
Release date:2024-07-17
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (3.59 Å)
Cite:Binding and sensing diverse small molecules using shape-complementary pseudocycles.
Science, 385, 2024
8E1E
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BU of 8e1e by Molmil
Scaffolding protein functional sites using deep learning
Descriptor: SG122_C3
Authors:Bera, A.K, Gerben, S, Baker, D.
Deposit date:2022-08-10
Release date:2023-08-16
Method:X-RAY DIFFRACTION (4.27 Å)
Cite:Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins.
Biochemistry, 62, 2023
8EVM
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BU of 8evm by Molmil
De novo design of chlorophyll special pair containing protein assemblies
Descriptor: Chlorophyll dimer protein designs, Special Pair 3 (SP3x)
Authors:Bera, A.K, Ennist, N.M.
Deposit date:2022-10-20
Release date:2024-05-15
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 20, 2024
8FJE
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BU of 8fje by Molmil
The five-repeat design E8
Descriptor: E8
Authors:Bera, A.K, An, L, Baker, D.
Deposit date:2022-12-19
Release date:2023-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Hallucination of closed repeat proteins containing central pockets.
Nat.Struct.Mol.Biol., 30, 2023
8FJF
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BU of 8fjf by Molmil
The three-repeat design H10
Descriptor: H10
Authors:Bera, A.K, An, L, Baker, D.
Deposit date:2022-12-19
Release date:2023-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Hallucination of closed repeat proteins containing central pockets.
Nat.Struct.Mol.Biol., 30, 2023
8FJG
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BU of 8fjg by Molmil
The two-repeat design H12
Descriptor: H12
Authors:Bera, A.K, An, L, Baker, D.
Deposit date:2022-12-19
Release date:2023-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Hallucination of closed repeat proteins containing central pockets.
Nat.Struct.Mol.Biol., 30, 2023
8FRE
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BU of 8fre by Molmil
Designed loop protein RBL4
Descriptor: 1,2-ETHANEDIOL, RBL4
Authors:Jude, K.M, Jiang, H, Baker, D, Garcia, K.C.
Deposit date:2023-01-06
Release date:2024-04-17
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:De novo design of buttressed loops for sculpting protein functions.
Nat.Chem.Biol., 20, 2024
8FRF
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BU of 8frf by Molmil
Homodimeric designed loop protein RBL7_C2_3
Descriptor: MALONATE ION, RBL7_C2_3
Authors:Jude, K.M, Jiang, H, Baker, D, Garcia, K.C.
Deposit date:2023-01-06
Release date:2024-04-17
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:De novo design of buttressed loops for sculpting protein functions.
Nat.Chem.Biol., 20, 2024
5TKV
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BU of 5tkv by Molmil
X-RAY CRYSTAL STRUCTURE OF THE "CLOSED" CONFORMATION OF CTP-INHIBITED E. COLI CYTIDINE TRIPHOSPHATE (CTP) SYNTHETASE
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CTP synthase, ...
Authors:Baldwin, E.P, Endrizzi, J.A.
Deposit date:2016-10-07
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Human CTP synthase filament structure reveals the active enzyme conformation.
Nat. Struct. Mol. Biol., 24, 2017
5U03
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BU of 5u03 by Molmil
Cryo-EM structure of the human CTP synthase filament
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CTP synthase 1, URIDINE 5'-TRIPHOSPHATE
Authors:Lynch, E.M, Kollman, J.M.
Deposit date:2016-11-22
Release date:2017-04-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Human CTP synthase filament structure reveals the active enzyme conformation.
Nat. Struct. Mol. Biol., 24, 2017
5U3C
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BU of 5u3c by Molmil
CryoEM structure of the CTP synthase filament at 4.6 Angstrom resolution
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CTP synthase, CYTIDINE-5'-TRIPHOSPHATE
Authors:Kollman, J.M, Lynch, E.M.
Deposit date:2016-12-01
Release date:2017-04-26
Last modified:2017-06-21
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Human CTP synthase filament structure reveals the active enzyme conformation.
Nat. Struct. Mol. Biol., 24, 2017

 

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