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2LXP
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BU of 2lxp by Molmil
NMR structure of two domains in ubiquitin ligase gp78, RING and G2BR, bound to its conjugating enzyme Ube2g
Descriptor: E3 ubiquitin-protein ligase AMFR, Ubiquitin-conjugating enzyme E2 G2, ZINC ION
Authors:Das, R, Linag, Y, Mariano, J, Li, J, Huang, T, King, A, Weissman, A, Ji, X, Byrd, R.
Deposit date:2012-08-30
Release date:2013-08-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J., 32, 2013
2LXH
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BU of 2lxh by Molmil
NMR structure of the RING domain in ubiquitin ligase gp78
Descriptor: E3 ubiquitin-protein ligase AMFR, ZINC ION
Authors:Das, R, Linag, Y, Mariano, J, Li, J, Huang, T, King, A, Weissman, A, Ji, X, Byrd, R.
Deposit date:2012-08-27
Release date:2013-08-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J., 32, 2013
8Q6J
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BU of 8q6j by Molmil
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Pertuzumab Fab heavy chain, Pertuzumab Fab light chain, ...
Authors:Ruedas, R, Vuillemot, R, Tubiana, T, Winter, J.M, Pieri, L, Arteni, A.A, Samson, C, Jonic, J, Mathieu, M, Bressanelli, S.
Deposit date:2023-08-11
Release date:2023-09-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and conformational variability of the HER2-trastuzumab-pertuzumab complex.
J.Struct.Biol., 216, 2024
8PWH
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BU of 8pwh by Molmil
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Pertuzumab Fab heavy chain, Pertuzumab Fab light chain, ...
Authors:Ruedas, R, Vuillemot, R, Tubiana, T, Winter, J.M, Pieri, L, Arteni, A.A, Samson, C, Jonic, J, Mathieu, M, Bressanelli, S.
Deposit date:2023-07-20
Release date:2024-02-21
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Structure and conformational variability of the HER2-trastuzumab-pertuzumab complex.
J.Struct.Biol., 216, 2024
2JR0
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BU of 2jr0 by Molmil
Solution structure of NusB from Aquifex Aeolicus
Descriptor: N utilization substance protein B homolog
Authors:Das, R, Loss, S, Li, J, Tarasov, S, Wingfield, P, Waugh, D.S, Byrd, R.A, Altieri, A.S.
Deposit date:2007-06-18
Release date:2008-02-19
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structural biophysics of the NusB:NusE antitermination complex.
J.Mol.Biol., 376, 2008
1V05
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BU of 1v05 by Molmil
Dimerization of human Filamin C: crystal structure of the domain 24
Descriptor: FILAMIN C
Authors:Pudas, R, Kiema, T.-R, Ylanne, J.
Deposit date:2004-03-22
Release date:2004-11-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structural Basis for Vertebrate Filamin Dimerization
Structure, 13, 2005
4LAD
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BU of 4lad by Molmil
Crystal Structure of the Ube2g2:RING-G2BR complex
Descriptor: E3 ubiquitin-protein ligase AMFR, OXALATE ION, Ubiquitin-conjugating enzyme E2 G2, ...
Authors:Liang, Y.-H, Li, J, Das, R, Byrd, R.A, Ji, X.
Deposit date:2013-06-19
Release date:2013-08-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J., 32, 2013
3H8K
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BU of 3h8k by Molmil
Crystal structure of Ube2g2 complxed with the G2BR domain of gp78 at 1.8-A resolution
Descriptor: Autocrine motility factor receptor, isoform 2, Ubiquitin-conjugating enzyme E2 G2
Authors:Kalathur, R.C, Das, R, Li, J, Byrd, R.A, Ji, X.
Deposit date:2009-04-29
Release date:2009-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78.
Mol.Cell, 34, 2009
2BP3
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BU of 2bp3 by Molmil
Crystal structure of Filamin A domain 17 and GPIb alpha cytoplasmic domain complex
Descriptor: FILAMIN A, GLYCEROL, PLATELET GLYCOPROTEIN IB ALPHA CHAIN
Authors:Pudas, R, Ylanne, J.
Deposit date:2005-04-18
Release date:2005-11-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:The Structure of the Gpib-Filamin a Complex.
Blood, 107, 2006
5WWP
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BU of 5wwp by Molmil
Crystal structure of Middle East respiratory syndrome coronavirus helicase (MERS-CoV nsp13)
Descriptor: ORF1ab, SULFATE ION, ZINC ION
Authors:Hao, W, Wojdyla, J.A, Zhao, R, Han, R, Das, R, Zlatev, I, Manoharan, M, Wang, M, Cui, S.
Deposit date:2017-01-03
Release date:2017-07-05
Last modified:2021-09-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of Middle East respiratory syndrome coronavirus helicase
PLoS Pathog., 13, 2017
6XRZ
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BU of 6xrz by Molmil
The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
Descriptor: Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
Authors:Zhang, K, Zheludev, I, Hagey, R, Wu, M, Haslecker, R, Hou, Y, Kretsch, R, Pintilie, G, Rangan, R, Kladwang, W, Li, S, Pham, E, Souibgui, C, Baric, R, Sheahan, T, Souza, V, Glenn, J, Chiu, W, Das, R.
Deposit date:2020-07-14
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Cryo-electron Microscopy and Exploratory Antisense Targeting of the 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome.
Biorxiv, 2020
6WLJ
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BU of 6wlj by Molmil
ATP-TTR-3 with AMP models, 9.6 Angstrom resolution
Descriptor: RNA (130-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (9.6 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLT
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BU of 6wlt by Molmil
Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution
Descriptor: RNA (231-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLK
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BU of 6wlk by Molmil
Apo ATP-TTR-3 models, 10.0 Angstrom resolution
Descriptor: RNA (130-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLU
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BU of 6wlu by Molmil
V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution
Descriptor: RNA (231-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLO
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BU of 6wlo by Molmil
hc16 ligase models, 11.0 Angstrom resolution
Descriptor: RNA (338-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLQ
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BU of 6wlq by Molmil
Apo SAM-IV riboswitch models, 4.7 Angstrom resolution
Descriptor: RNA (119-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLM
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BU of 6wlm by Molmil
F. nucleatum glycine riboswitch with glycine models, 7.4 Angstrom resolution
Descriptor: RNA (171-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLR
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BU of 6wlr by Molmil
SAM-IV riboswitch with SAM models, 4.8 Angstrom resolution
Descriptor: RNA (119-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLS
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BU of 6wls by Molmil
Tetrahymena ribozyme models, 6.8 Angstrom resolution
Descriptor: RNA (388-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLN
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BU of 6wln by Molmil
hc16 ligase product models, 10.0 Angstrom resolution
Descriptor: RNA (349-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6WLL
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BU of 6wll by Molmil
Apo F. nucleatum glycine riboswitch models, 10.0 Angstrom resolution
Descriptor: RNA (171-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
2M20
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BU of 2m20 by Molmil
EGFR transmembrane - juxtamembrane (TM-JM) segment in bicelles: MD guided NMR refined structure.
Descriptor: Epidermal growth factor receptor
Authors:Endres, N.F, Das, R, Smith, A, Arkhipov, A, Kovacs, E, Huang, Y, Pelton, J.G, Shan, Y, Shaw, D.E, Wemmer, D.E, Groves, J.T, Kuriyan, J.
Deposit date:2012-12-11
Release date:2013-02-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Conformational Coupling across the Plasma Membrane in Activation of the EGF Receptor.
Cell(Cambridge,Mass.), 152, 2013
7UPH
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BU of 7uph by Molmil
Structure of a ribosome with tethered subunits
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Kim, D.S, Watkins, A, Bidstrup, E, Lee, J, Topkar, V.V, Kofman, C, Schwarz, K.J, Liu, Y, Pintilie, G, Roney, E, Das, R, Jewett, M.C.
Deposit date:2022-04-15
Release date:2022-08-17
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:Three-dimensional structure-guided evolution of a ribosome with tethered subunits.
Nat.Chem.Biol., 18, 2022
6UES
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BU of 6ues by Molmil
Apo SAM-IV Riboswitch
Descriptor: RNA (119-MER)
Authors:Zhang, K, Li, S, Kappel, K, Pintilie, G, Su, Z, Mou, T, Schmid, M, Das, R, Chiu, W.
Deposit date:2019-09-23
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 angstrom resolution.
Nat Commun, 10, 2019

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PDB entries from 2024-09-18

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