Author results

1S18
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STRUCTURE AND PROTEIN DESIGN OF HUMAN APYRASE
Descriptor:apyrase, CALCIUM ION, ACETATE ION, ...
Authors:Dai, J., Liu, J., Deng, Y., Smith, T.M., Lu, M.
Deposit date:2004-01-05
Release date:2004-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.), 116, 2004
1S1D
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STRUCTURE AND PROTEIN DESIGN OF HUMAN APYRASE
Descriptor:apyrase, CALCIUM ION, ACETATE ION, ...
Authors:Dai, J., Liu, J., Deng, Y., Smith, T.M., Lu, M.
Deposit date:2004-01-06
Release date:2004-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.), 116, 2004
1X95
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SOLUTION STRUCTURE OF THE DNA-HEXAMER ATGCAT COMPLEXED WITH DNA BIS-INTERCALATING ANTICANCER DRUG XR5944 (MLN944)
Descriptor:5'-D(*AP*TP*GP*CP*AP*T)-3', 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM
Authors:Dai, J., Punchihewa, C., Mistry, P., Ooi, A.T., Yang, D.
Deposit date:2004-08-19
Release date:2004-09-28
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Novel DNA bis-intercalation by MLN944, a potent clinical bisphenazine anticancer drug.
J.Biol.Chem., 279, 2004
2F8U
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G-QUADRUPLEX STRUCTURE FORMED IN HUMAN BCL-2 PROMOTER, HYBRID FORM
Descriptor:5'-D(*GP*GP*GP*CP*GP*CP*GP*GP*GP*AP*GP*GP*AP*AP*TP*TP*GP*GP*GP*CP*GP*GP*G)-3'
Authors:Dai, J., Chen, D., Carver, M., Yang, D.
Deposit date:2005-12-03
Release date:2006-11-07
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region.
Nucleic Acids Res., 34, 2006
2HY9
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HUMAN TELOMERE DNA QUADRUPLEX STRUCTURE IN K+ SOLUTION HYBRID-1 FORM
Descriptor:DNA (26-MER)
Authors:Dai, J., Punchihewa, C., Jones, R.A., Hurley, L., Yang, D.
Deposit date:2006-08-04
Release date:2007-04-10
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation.
Nucleic Acids Res., 35, 2007
2JPZ
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HUMAN TELOMERE DNA QUADRUPLEX STRUCTURE IN K+ SOLUTION HYBRID-2 FORM
Descriptor:DNA (26-MER)
Authors:Dai, J., Carver, M., Punchihewa, C., Jones, R., Yang, D.
Deposit date:2007-05-25
Release date:2007-12-04
Last modified:2014-10-01
Method:SOLUTION NMR
Cite:Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence
Nucleic Acids Res., 35, 2007
2L7V
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QUINDOLINE/G-QUADRUPLEX COMPLEX
Descriptor:DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), POTASSIUM ION, N,N-diethyl-N'-(10H-indolo[3,2-b]quinolin-11-yl)ethane-1,2-diamine
Authors:Dai, J., Carver, M., Mathad, R., Yang, D.
Deposit date:2010-12-23
Release date:2011-11-09
Last modified:2011-11-16
Method:SOLUTION NMR
Cite:Solution Structure of a 2:1 Quindoline-c-MYC G-Quadruplex: Insights into G-Quadruplex-Interactive Small Molecule Drug Design.
J.Am.Chem.Soc., 133, 2011
1JCC
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CRYSTAL STRUCTURE OF A NOVEL ALANINE-ZIPPER TRIMER AT 1.7 A RESOLUTION, V13A,L16A,V20A,L23A,V27A,M30A,V34A MUTATIONS
Descriptor:MAJOR OUTER MEMBRANE LIPOPROTEIN, ZINC ION
Authors:Liu, J., Dai, J., Lu, M.
Deposit date:2001-06-08
Release date:2003-06-17
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Zinc-Mediated Helix Capping in A Triple-Helical Protein
Biochemistry, 42, 2003
5ZQZ
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STRUCTURE OF HUMAN MITOCHONDRIAL TRIFUNCTIONAL PROTEIN, TETRAMER
Descriptor:Trifunctional enzyme subunit alpha, mitochondrial, Trifunctional enzyme subunit beta
Authors:Liang, K., Li, N., Dai, J., Wang, X., Liu, P., Chen, X., Wang, C., Gao, N., Xiao, J.
Deposit date:2018-04-20
Release date:2018-06-20
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structure of human mitochondrial trifunctional protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5ZRV
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STRUCTURE OF HUMAN MITOCHONDRIAL TRIFUNCTIONAL PROTEIN, OCTAMER
Descriptor:Trifunctional enzyme subunit alpha, mitochondrial, Trifunctional enzyme subunit beta
Authors:Liang, K., Li, N., Dai, J., Wang, X., Liu, P., Chen, X., Wang, C., Gao, N., Xiao, J.
Deposit date:2018-04-25
Release date:2018-06-20
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Cryo-EM structure of human mitochondrial trifunctional protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1SWV
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CRYSTAL STRUCTURE OF THE D12A MUTANT OF PHOSPHONOACETALDEHYDE HYDROLASE COMPLEXED WITH MAGNESIUM
Descriptor:phosphonoacetaldehyde hydrolase, MAGNESIUM ION
Authors:Zhang, G., Morais, M.C., Dai, J., Zhang, W., Dunaway-Mariano, D., Allen, K.N.
Deposit date:2004-03-30
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Investigation of metal ion binding in phosphonoacetaldehyde hydrolase identifies sequence markers for metal-activated enzymes of the HAD enzyme superfamily
Biochemistry, 43, 2004
1SWW
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CRYSTAL STRUCTURE OF THE PHOSPHONOACETALDEHYDE HYDROLASE D12A MUTANT COMPLEXED WITH MAGNESIUM AND SUBSTRATE PHOSPHONOACETALDEHYDE
Descriptor:phosphonoacetaldehyde hydrolase, MAGNESIUM ION, PHOSPHONOACETALDEHYDE
Authors:Zhang, G., Morais, M.C., Dai, J., Zhang, W., Dunaway-Mariano, D., Allen, K.N.
Deposit date:2004-03-30
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Investigation of metal ion binding in phosphonoacetaldehyde hydrolase identifies sequence markers for metal-activated enzymes of the HAD enzyme superfamily
Biochemistry, 43, 2004
1XAV
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MAJOR G-QUADRUPLEX STRUCTURE FORMED IN HUMAN C-MYC PROMOTER, A MONOMERIC PARALLEL-STRANDED QUADRUPLEX
Descriptor:5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3', POTASSIUM ION
Authors:Ambrus, A., Chen, D., Dai, J., Jones, R.A., Yang, D.
Deposit date:2004-08-26
Release date:2005-02-01
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Solution structure of the biologically relevant G-Quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization.
Biochemistry, 44, 2005
1Z4N
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STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE WITH INHIBITOR BOUND ALPHA-GALACTOSE 1-PHOSPHATE COCRYSTALLIZED WITH FLUORIDE
Descriptor:Beta-phosphoglucomutase, MAGNESIUM ION, 1-O-phosphono-alpha-D-galactopyranose
Authors:Tremblay, L.W., Zhang, G., Dai, J., Dunaway-Mariano, D., Allen, K.N.
Deposit date:2005-03-16
Release date:2005-04-19
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Chemical Confirmation of a Pentavalent Phosphorane in Complex with beta-Phosphoglucomutase
J.Am.Chem.Soc., 127, 2005
1Z4O
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STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE WITH INHIBITOR BOUND ALPHA-GALACTOSE 1-PHOSPHATE
Descriptor:Beta-phosphoglucomutase, MAGNESIUM ION, 1-O-phosphono-alpha-D-galactopyranose
Authors:Tremblay, L.W., Zhang, G., Dai, J., Dunaway-Mariano, D., Allen, K.N.
Deposit date:2005-03-16
Release date:2005-04-19
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chemical Confirmation of a Pentavalent Phosphorane in Complex with beta-Phosphoglucomutase
J.Am.Chem.Soc., 127, 2005
1ZOL
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NATIVE BETA-PGM
Descriptor:beta-phosphoglucomutase, MAGNESIUM ION
Authors:Zhang, G., Tremblay, L.W., Dai, J., Wang, L., Dunaway-Mariano, D., Allen, K.N.
Deposit date:2005-05-13
Release date:2005-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Catalytic cycling in beta-phosphoglucomutase: a kinetic and structural analysis
Biochemistry, 44, 2005
2KKA
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HUMAN TELOMERE DNA TWO-TETRAD QUADRUPLEX STRUCTURE IN K+ SOLUTION
Descriptor:5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*IP*GP*GP*TP*TP*AP*GP*GP*GP*T)-3'
Authors:Zhang, Z., Dai, J., Yang, D.
Deposit date:2009-06-16
Release date:2009-12-15
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Structure of a two-G-tetrad intramolecular G-quadruplex formed by a variant human telomeric sequence in K+ solution: insights into the interconversion of human telomeric G-quadruplex structures.
Nucleic Acids Res., 38, 2010
2MC7
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STRUCTURE OF SALMONELLA MGTR
Descriptor:Regulatory peptide
Authors:Jean-Francois, F., Dai, J., Yu, L., Myrick, A., Rubin, E., Fajer, P., Song, L., Zhou, H., Cross, T.
Deposit date:2013-08-15
Release date:2013-10-30
Last modified:2014-01-22
Method:SOLID-STATE NMR
Cite:Binding of MgtR, a Salmonella Transmembrane Regulatory Peptide, to MgtC, a Mycobacterium tuberculosis Virulence Factor: A Structural Study.
J.Mol.Biol., 426, 2014
2MMU
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STRUCTURE OF CRGA, A CELL DIVISION STRUCTURAL AND REGULATORY PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS, IN LIPID BILAYERS
Descriptor:Cell division protein CrgA
Authors:Das, N., Dai, J., Hung, I., Rajagopalan, M., Zhou, H., Cross, T.A.
Deposit date:2014-03-18
Release date:2014-12-17
Last modified:2015-03-25
Method:SOLID-STATE NMR
Cite:Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers.
Proc.Natl.Acad.Sci.USA, 112, 2015
4QQV
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EXTRACELLULAR DOMAINS OF MOUSE IL-3 BETA RECEPTOR
Descriptor:Interleukin-3 receptor class 2 subunit beta, N-ACETYL-D-GLUCOSAMINE
Authors:Jackson, C.J., Young, I.G., Murphy, J.M., Carr, P.D., Ewens, C.L., Dai, J., Ollis, D.L.
Deposit date:2014-06-30
Release date:2014-09-03
Last modified:2014-10-22
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Crystal structure of the mouse interleukin-3 beta-receptor: insights into interleukin-3 binding and receptor activation.
Biochem.J., 463, 2014
3FM9
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ANALYSIS OF THE STRUCTURAL DETERMINANTS UNDERLYING DISCRIMINATION BETWEEN SUBSTRATE AND SOLVENT IN BETA-PHOSPHOGLUCOMUTASE CATALYSIS
Descriptor:Beta-phosphoglucomutase, MAGNESIUM ION
Authors:Finci, L., Lahiri, S., Peisach, E., Allen, K.N.
Deposit date:2008-12-19
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Analysis of the structural determinants underlying discrimination between substrate and solvent in beta-phosphoglucomutase catalysis.
Biochemistry, 48, 2009
3W2D
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL EENTEROTOXIN B IN COMPLEX WITH A NOVEL NEUTRALIZATION MONOCLONAL ANTIBODY FAB FRAGMENT
Descriptor:Enterotoxin type B, Monoclonal Antibody 3E2 Fab figment light chain, Monoclonal Antibody 3E2 Fab figment heavy chain, ...
Authors:Liang, S.Y., Hu, S., Dai, J.X., Guo, Y.J., Lou, Z.Y.
Deposit date:2012-11-28
Release date:2013-12-25
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for the neutralization and specificity of Staphylococcal enterotoxin B against its MHC Class II binding site.
MAbs, 6, 2014
5G06
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CRYO-EM STRUCTURE OF YEAST CYTOPLASMIC EXOSOME
Descriptor:EXOSOME COMPLEX COMPONENT RRP45, EXOSOME COMPLEX COMPONENT SKI6, EXOSOME COMPLEX COMPONENT RRP43, ...
Authors:Liu, J.J., Niu, C.Y., Wu, Y., Tan, D., Wang, Y., Ye, M.D., Liu, Y., Zhao, W.W., Zhou, K., Liu, Q.S., Dai, J.B., Yang, X.R., Dong, M.Q., Huang, N., Wang, H.W.
Deposit date:2016-03-17
Release date:2016-06-15
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryoem Structure of Yeast Cytoplasmic Exosome Complex.
Cell Res., 26, 2016
1Y29
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THREE DIMENSIONAL SOLUTION STRUCTURE OF HUWENTOXIN-X BY 2D 1H-NMR
Descriptor:huwentoxin-x
Authors:Liu, Z., Liang, S.
Deposit date:2004-11-22
Release date:2004-12-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Function and solution structure of Huwentoxin-X, a specific blocker of N-type calcium channels, from the Chinese bird spider Ornithoctonus huwena
J.Biol.Chem., 281, 2006
3CXD
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CRYSTAL STRUCTURE OF ANTI-OSTEOPONTIN ANTIBODY 23C3 IN COMPLEX WITH ITS EPITOPE PEPTIDE
Descriptor:Fab fragment of anti-osteopontin antibody 23C3, Light chain, Heavy chain, ...
Authors:Du, J., Yang, H., Zhong, C., Ding, J.
Deposit date:2008-04-24
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular basis of recognition of human osteopontin by 23C3, a potential therapeutic antibody for treatment of rheumatoid arthritis
J.Mol.Biol., 382, 2008
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