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5DDO
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STRUCTURAL AND DYNAMIC BASIS FOR LOW AFFINITY-HIGH SELECTIVITY BINDING OF L-GLUTAMINE BY THE GLN-RIBOSWITCH
Descriptor:L-glutamine riboswitch (58-MER), U1 small nuclear ribonucleoprotein A
Authors:Ren, A., Patel, D.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
5DDP
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L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE
Descriptor:RNA (61-MER), U1 small nuclear ribonucleoprotein A, GLUTAMINE, ...
Authors:Ren, A., Patel, D.J.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
5DDQ
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L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE SOAKED WITH MN2+
Descriptor:L-glutamine riboswitch RNA (61-MER), U1 small nuclear ribonucleoprotein A, GLUTAMINE, ...
Authors:Ren, A., Patel, D.J.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2017-04-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
5DDR
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L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE SOAKED WITH CS+
Descriptor:L-glutamine riboswitch RNA (61-MER), U1 small nuclear ribonucleoprotein A, GLUTAMINE, ...
Authors:Ren, A., Patel, D.J.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
4RGE
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CRYSTAL STRUCTURE OF THE IN-LINE ALIGNED ENV22 TWISTER RIBOZYME
Descriptor:env22 twister ribozyme, MAGNESIUM ION
Authors:Ren, A., Rajashankar, K.R., Simanshu, D., Patel, D.
Deposit date:2014-09-30
Release date:2014-12-03
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
4RGF
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CRYSTAL STRUCTURE OF THE IN-LINE ALIGNED ENV22 TWISTER RIBOZYME SOAKED WITH MN2+
Descriptor:env22 twister ribozyme, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Ren, A., Rajashankar, K.R., Simanshu, D., Patel, D.
Deposit date:2014-09-30
Release date:2014-12-03
Method:X-RAY DIFFRACTION (3.2008 Å)
Cite:In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
4ZNP
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THE STRUCTURE OF A PFI RIBOSWITCH BOUND TO ZMP
Descriptor:pfI Riboswitch, AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, MAGNESIUM ION
Authors:Ren, A., Patel, D.J., Rajashankar, R.K.
Deposit date:2015-05-05
Release date:2015-08-26
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism.
Structure, 23, 2015
5K7C
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THE NATIVE STRUCTURE OF NATIVE PISTOL RIBOZYME
Descriptor:RNA 47-MER, DNA/RNA 11-MER, MAGNESIUM ION
Authors:Ren, A., Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7D
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THE STRUCTURE OF NATIVE PISTOL RIBOZYME, BOUND TO IRIDIUM
Descriptor:RNA 47-MER, DNA/RNA 11-MER, IRIDIUM HEXAMMINE ION, ...
Authors:Ren, A., Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7E
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THE STRUCTURE OF PISTOL RIBOZYME, SOAKED WITH MN2+
Descriptor:RNA 47-MER, DNA/RNA 11-MER, MANGANESE (II) ION
Authors:Ren, A., Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (3.27 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
4IX7
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CRYSTAL STRUCTURE OF THE INSV-BEN DOMAIN COMPLEXED TO ITS DNA TARGET SITE
Descriptor:5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3', RE55538p
Authors:Ren, A., Serganov, A., Patel, D.J.
Deposit date:2013-01-24
Release date:2013-03-20
Last modified:2013-04-03
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors.
Genes Dev., 27, 2013
6LAS
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THE WILDTYPE SAM-VI RIBOSWITCH BOUND TO SAM
Descriptor:RNA (55-MER), U1 small nuclear ribonucleoprotein A, S-ADENOSYLMETHIONINE
Authors:Ren, A., Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Method:X-RAY DIFFRACTION (2.708 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAU
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THE WILDTYPE SAM-VI RIBOSWITCH BOUND TO SAH
Descriptor:RNA (54-MER), U1 small nuclear ribonucleoprotein A, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Ren, A., Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Method:X-RAY DIFFRACTION (3.109 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAZ
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THE WILDTYPE SAM-VI RIBOSWITCH BOUND TO A N-MUSTARD SAM ANALOG M1
Descriptor:RNA (55-MER), U1 small nuclear ribonucleoprotein A, MAGNESIUM ION, ...
Authors:Ren, A., Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
4X0G
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STRUCTURE OF BSG25A BINDING WITH DNA
Descriptor:Blastoderm-specific gene 25A, DNA (5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3'), ACETATE ION
Authors:Ren, A.
Deposit date:2014-11-21
Release date:2015-01-21
Method:X-RAY DIFFRACTION (3.2065 Å)
Cite:Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family.
Genes Dev., 29, 2015
5DUN
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THE CRYSTAL STRUCTURE OF OME SUBSTITUTED TWISTER RIBOZYME
Descriptor:RNA (54-MER), MAGNESIUM ION, POTASSIUM ION
Authors:Ren, A., Patel, D.J., Micura, R., Rajashankar, K.R.
Deposit date:2015-09-19
Release date:2015-10-28
Last modified:2016-01-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.
Angew.Chem.Int.Ed.Engl., 54, 2015
6JQ5
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THE STRUCTURE OF HATCHET RIBOZYME
Descriptor:RNA (82-MER), MAGNESIUM ION
Authors:Ren, A., Zheng, L.
Deposit date:2019-03-29
Release date:2019-06-12
Method:X-RAY DIFFRACTION (2.059 Å)
Cite:Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JQ6
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HATCHET RIBOZYME STRUCTURE SOAKING WITH IR(NH3)6+
Descriptor:RNA (81-MER), IRIDIUM HEXAMMINE ION
Authors:Ren, A., Zheng, L.
Deposit date:2019-03-29
Release date:2019-06-12
Method:X-RAY DIFFRACTION (2.626 Å)
Cite:Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
6LAX
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THE MUTANT SAM-VI RIBOSWITCH (U6C) BOUND TO SAM
Descriptor:RNA (55-MER), U1 small nuclear ribonucleoprotein A, S-ADENOSYLMETHIONINE
Authors:Sun, A., Ren, A.
Deposit date:2019-11-13
Release date:2020-01-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
5Y85
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STRUCTURE-BASED INSIGHTS INTO SELF-CLEAVAGE BY A FOUR-WAY JUNCTIONAL TWISTER-SISTER RIBOZYME
Descriptor:RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3'), DNA/RNA (50-MER), MAGNESIUM ION
Authors:Zheng, L., Micura, R.L., Ren, A.
Deposit date:2017-08-18
Release date:2017-11-22
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun, 8, 2017
5Y87
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STRUCTURE-BASED INSIGHTS INTO SELF-CLEAVAGE BY A FOUR-WAY JUNCTIONAL TWISTER-SISTER RIBOZYME
Descriptor:RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3'), DNA/RNA (50-MER), MANGANESE (II) ION
Authors:Zheng, L., Micura, R.L., Ren, A.
Deposit date:2017-08-19
Release date:2017-11-22
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.132 Å)
Cite:Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun, 8, 2017
3VRS
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CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, SOAKED IN MN2+
Descriptor:Fluoride riboswitch, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Ren, A.M., Rajashankar, K.R., Patel, D.J.
Deposit date:2012-04-13
Release date:2012-05-09
Last modified:2013-02-13
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch.
Nature, 486, 2012
4EN5
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CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, TL-ACETATE SOAKED
Descriptor:Fluoride riboswitch, MAGNESIUM ION, FLUORIDE ION, ...
Authors:Ren, A.M., Rajashankar, K.R., Patel, D.J.
Deposit date:2012-04-12
Release date:2012-05-09
Last modified:2013-02-13
Method:X-RAY DIFFRACTION (2.957 Å)
Cite:Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch.
Nature, 486, 2012
4ENA
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CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, SOAKED IN CS+
Descriptor:Fluoride riboswitch, CESIUM ION, MAGNESIUM ION, ...
Authors:Ren, A.M., Rajashankar, K.R., Patel, D.J.
Deposit date:2012-04-12
Release date:2012-05-09
Last modified:2013-02-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch.
Nature, 486, 2012
4ENB
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CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, BOUND TO IRIDIUM
Descriptor:Fluoride riboswitch, IRIDIUM HEXAMMINE ION, POTASSIUM ION, ...
Authors:Ren, A.M., Rajashankar, K.R., Patel, D.J.
Deposit date:2012-04-12
Release date:2012-05-09
Last modified:2013-02-13
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch.
Nature, 486, 2012
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PDB entries from 2020-10-28