5Y85

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Summary for 5Y85

DescriptorRNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3'), DNA/RNA (50-MER), MAGNESIUM ION, ... (4 entities in total)
Functional Keywordstwister-sister, riboyzme, catalysis, self-cleaving, rna
Biological sourcemetagenome
Total number of polymer chains4
Total molecular weight44376.16
Authors
Zheng, L.,Micura, R.L.,Ren, A. (deposition date: 2017-08-18, release date: 2017-11-22)
Primary citation
Zheng, L.,Mairhofer, E.,Teplova, M.,Zhang, Y.,Ma, J.,Patel, D.J.,Micura, R.,Ren, A.
Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun, 8:1180-1180, 2017
PubMed: 29081514 (PDB entries with the same primary citation)
DOI: 10.1038/s41467-017-01276-y
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.001 Å)
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Structure validation

RfreeClashscoreRSRZ outliersRNA backbone0.237000.74MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5y85
no rotation
Molmil generated image of 5y85
rotated about x axis by 90°
Molmil generated image of 5y85
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5y85
no rotation
Molmil generated image of 5y85
rotated about x axis by 90°
Molmil generated image of 5y85
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5y85.pdb2.gz [33.55 KB])
Coordinate files for Biological unit (5y85.pdb1.gz [33.42 KB])
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