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1HMY
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CRYSTAL STRUCTURE OF THE HHAI DNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYL-L-METHIONINE
Descriptor:HaeIII METHYLTRANSFERASE, S-ADENOSYLMETHIONINE
Authors:Cheng, X.
Deposit date:1993-08-05
Release date:1993-10-31
Last modified:2012-02-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine.
Cell(Cambridge,Mass.), 74, 1993
1LBA
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THE STRUCTURE OF BACTERIOPHAGE T7 LYSOZYME, A ZINC AMIDASE AND AN INHIBITOR OF T7 RNA POLYMERASE
Descriptor:T7 LYSOZYME, ZINC ION
Authors:Cheng, X.
Deposit date:1993-12-22
Release date:1994-04-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of bacteriophage T7 lysozyme, a zinc amidase and an inhibitor of T7 RNA polymerase.
Proc.Natl.Acad.Sci.USA, 91, 1994
1PVI
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STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA
Descriptor:DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3'), PROTEIN (PVUII (E.C.3.1.21.4))
Authors:Cheng, X., Balendiran, K., Schildkraut, I., Anderson, J.E.
Deposit date:1994-11-16
Release date:1995-02-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of PvuII endonuclease with cognate DNA.
EMBO J., 13, 1994
5CX3
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CRYSTAL STRUCTURE OF FYCO1 LIR IN COMPLEX WITH LC3A
Descriptor:Microtubule-associated proteins 1A/1B light chain 3A, FYVE and coiled-coil domain-containing protein 1, GLYCEROL
Authors:Cheng, X., Pan, L.
Deposit date:2015-07-28
Release date:2016-08-03
Last modified:2016-08-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of FYCO1 and MAP1LC3A interaction reveals a novel binding mode for Atg8-family proteins.
Autophagy, 12, 2016
5MHT
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TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH HEMIMETHYLATED DNA AND ADOHCY
Descriptor:DNA (5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'), PROTEIN (HHAI METHYLTRANSFERASE), ...
Authors:Cheng, X.
Deposit date:1996-10-22
Release date:1997-07-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A structural basis for the preferential binding of hemimethylated DNA by HhaI DNA methyltransferase.
J.Mol.Biol., 263, 1996
4MHT
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TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCY
Descriptor:DNA (5'-D(*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE (E.C.2.1.1.73)), ...
Authors:Cheng, X.
Deposit date:1996-07-24
Release date:1997-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes.
J.Mol.Biol., 261, 1996
1MHT
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COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE
Descriptor:DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE), ...
Authors:Cheng, X.
Deposit date:1994-12-08
Release date:1995-06-03
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:HhaI methyltransferase flips its target base out of the DNA helix.
Cell(Cambridge,Mass.), 76, 1994
5X56
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CRYSTAL STRUCTURE OF PSB27 FROM ARABIDOPSIS THALIANA
Descriptor:Photosystem II repair protein PSB27-H1, chloroplastic
Authors:Liu, J., Cheng, X.
Deposit date:2017-02-15
Release date:2017-12-27
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of Psb27 from Arabidopsis thaliana determined at a resolution of 1.85 angstrom.
Photosyn. Res., 136, 2018
2M2D
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HUMAN PROGRAMMED CELL DEATH 1 RECEPTOR
Descriptor:Programmed cell death protein 1
Authors:Veverka, V., Cheng, X., Waters, L.C., Muskett, F.W., Morgan, S., Lesley, A., Griffiths, M., Stubberfield, C., Griffin, R., Henry, A.J., Robinson, M.K., Jansson, A., Ladbury, J.E., Ikemizu, S., Davis, S.J., Carr, M.D.
Deposit date:2012-12-18
Release date:2013-02-27
Last modified:2013-05-15
Method:SOLUTION NMR
Cite:Structure and interactions of the human programmed cell death 1 receptor.
J.Biol.Chem., 288, 2013
2MB5
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HYDRATION IN PROTEIN CRYSTALS. A NEUTRON DIFFRACTION ANALYSIS OF CARBONMONOXYMYOGLOBIN
Descriptor:MYOGLOBIN, SULFATE ION, AMMONIUM CATION WITH D, ...
Authors:Schoenborn, B.P., Cheng, X.
Deposit date:1989-10-11
Release date:1991-04-15
Last modified:2011-07-13
Method:NEUTRON DIFFRACTION (1.8 Å)
Cite:Hydration in Protein Crystals. A Neutron Diffraction Analysis of Carbonmonoxymyoglobin
Acta Crystallogr.,Sect.B, 46, 1990
2PV0
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DNA METHYLTRANSFERASE 3 LIKE PROTEIN (DNMT3L)
Descriptor:DNA (cytosine-5)-methyltransferase 3-like, ZINC ION
Authors:Cheng, X.
Deposit date:2007-05-09
Release date:2007-08-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Nature, 448, 2007
2PVC
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DNMT3L RECOGNIZES UNMETHYLATED HISTONE H3 LYSINE 4
Descriptor:DNA (cytosine-5)-methyltransferase 3-like, Histone H3 peptide, ZINC ION
Authors:Cheng, X.
Deposit date:2007-05-09
Release date:2007-08-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.69 Å)
Cite:DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Nature, 448, 2007
3CBM
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SET7/9-ER-ADOMET COMPLEX
Descriptor:Histone-lysine N-methyltransferase SETD7, Estrogen receptor, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Cheng, X., Jia, D.
Deposit date:2008-02-22
Release date:2008-05-13
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase.
Mol.Cell, 30, 2008
3CBO
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SET7/9-ER-ADOHCY COMPLEX
Descriptor:Histone-lysine N-methyltransferase SETD7, Estrogen receptor, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Cheng, X., Jia, D.
Deposit date:2008-02-22
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase.
Mol.Cell, 30, 2008
3CBP
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SET7/9-ER-SINEFUNGIN COMPLEX
Descriptor:Histone-lysine N-methyltransferase SETD7, Estrogen receptor, SINEFUNGIN, ...
Authors:Cheng, X., Jia, D.
Deposit date:2008-02-22
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase.
Mol.Cell, 30, 2008
6MHT
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TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND DNA CONTAINING 4'-THIO-2'DEOXYCYTIDINE AT THE TARGET
Descriptor:DNA (5'-D(P*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*AP*GP*(4SC)P*GP*CP*AP*TP*GP*G)-3'), CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI, ...
Authors:Cheng, X.
Deposit date:1998-08-05
Release date:1998-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase.
Nucleic Acids Res., 25, 1997
6DQ4
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR GSK-J1
Descriptor:Linked KDM5A Jmj Domain, 3-[[2-pyridin-2-yl-6-(1,2,4,5-tetrahydro-3-benzazepin-3-yl)pyrimidin-4-yl]amino]propanoic acid, MANGANESE (II) ION, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.392 Å)
Cite:Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A.
J. Med. Chem., 2018
6DQ5
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N43 I.E. 3-((6-(4-ACRYLOYL-1,4-DIAZEPAN-1-YL)-2-(PYRIDIN-2-YL)PYRIMIDIN-4-YL)AMINO)PROPANOIC ACID
Descriptor:Linked KDM5A Jmj Domain, N-[6-(4-acryloyl-1,4-diazepan-1-yl)-2-(pyridin-2-yl)pyrimidin-4-yl]-beta-alanine, MANGANESE (II) ION
Authors:Horton, J.R., Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A.
J. Med. Chem., 2018
6DQ6
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N44 I.E. 3-((2-(PYRIDIN-2-YL)-6-(4-(VINYLSULFONYL)-1,4-DIAZEPAN-1-YL)PYRIMIDIN-4-YL)AMINO)PROPANOIC ACID
Descriptor:Linked KDM5A Jmj Domain, N-{6-[4-(ethenylsulfonyl)-1,4-diazepan-1-yl]-2-(pyridin-2-yl)pyrimidin-4-yl}-beta-alanine, MANGANESE (II) ION, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.587 Å)
Cite:Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A.
J. Med. Chem., 2018
6DQ8
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N49 I.E. 2-((2-CHLOROPHENYL)(2-(1-METHYLPYRROLIDIN-2-YL)ETHOXY)METHYL)THIENO[3,2-B]PYRIDINE-7-CARBOXYLIC ACID
Descriptor:Linked KDM5A Jmj Domain, 2-[(R)-(2-chlorophenyl){2-[(2S)-1-methylpyrrolidin-2-yl]ethoxy}methyl]thieno[3,2-b]pyridine-7-carboxylic acid, 2-[(S)-(2-chlorophenyl){2-[(2S)-1-methylpyrrolidin-2-yl]ethoxy}methyl]thieno[3,2-b]pyridine-7-carboxylic acid, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A.
J. Med. Chem., 2018
6DQ9
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LINKED KDM5A JMJ DOMAIN BOUND TO THE COVALENT INHIBITOR N69 I.E. [2-((3-ACRYLAMIDOPHENYL)(2-(PIPERIDIN-1-YL)ETHOXY)METHYL)THIENO[3,2-B]PYRIDINE-7-CARBOXYLIC ACID]
Descriptor:Linked KDM5A Jmj Domain, 2-{(R)-[3-(acryloylamino)phenyl][2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, MANGANESE (II) ION, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.748 Å)
Cite:Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A.
J. Med. Chem., 2018
6DQA
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LINKED KDM5A JMJ DOMAIN BOUND TO INHIBITOR N70 I.E.[2-((3-AMINOPHENYL)(2-(PIPERIDIN-1-YL)ETHOXY)METHYL)THIENO[3,2-B]PYRIDINE-7-CARBOXYLIC ACID]
Descriptor:Linked KDM5A Jmj Domain, 2-{(R)-(3-aminophenyl)[2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, MANGANESE (II) ION, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.888 Å)
Cite:Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A.
J. Med. Chem., 2018
6DQB
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LINKED KDM5A JMJ DOMAIN FORMING COVALENT BOND TO INHIBITOR N71 I.E. 2-((3-(4-(DIMETHYLAMINO)BUT-2-ENAMIDO)PHENYL)(2-(PIPERIDIN-1-YL)ETHOXY)METHYL)THIENO[3,2-B]PYRIDINE-7-CARBOXYLIC ACID
Descriptor:Linked KDM5A Jmj Domain, 2-{(R)-(3-{[(2E)-4-(dimethylamino)but-2-enoyl]amino}phenyl)[2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, 2-{(R)-(3-{[4-(dimethylamino)butanoyl]amino}phenyl)[2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.791 Å)
Cite:Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A.
J. Med. Chem., 2018
6BGU
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-CHLOROPHENYL)(PROPOXY)METHYL)-1H-PYRROLO[3,2-B]PYRIDINE (COMPOUND N9)
Descriptor:Lysine-specific demethylase 5A, linked KDM5A JMJ domain, 2-[(R)-(2-chlorophenyl)(propoxy)methyl]-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2017-10-29
Release date:2018-03-28
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (1.684 Å)
Cite:Insights into the Action of Inhibitor Enantiomers against Histone Lysine Demethylase 5A.
J. Med. Chem., 61, 2018
6BGV
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-CHLOROPHENYL)(2-(PIPERIDIN-1-YL)ETHOXY)METHYL)-1L2-PYRROLO[3,2-B]PYRIDINE-7-CARBOXYLIC ACID (COMPOUND N40)
Descriptor:Lysine-specific demethylase 5A, linked KDM5A JMJ domain, 2-{(S)-(2-chlorophenyl)[2-(piperidin-1-yl)ethoxy]methyl}-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid, ...
Authors:Horton, J.R., Cheng, X.
Deposit date:2017-10-29
Release date:2018-03-28
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (1.592 Å)
Cite:Insights into the Action of Inhibitor Enantiomers against Histone Lysine Demethylase 5A.
J. Med. Chem., 61, 2018
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