Author results

4QPT
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STRUCTURAL INVESTIGATION OF HNRNP L
Descriptor:Heterogenous nuclear ribonucleoprotein L, PHOSPHATE ION
Authors:Blatter, M., Allain, F.H.-T.
Deposit date:2014-06-25
Release date:2015-05-20
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (1.351 Å)
Cite:The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein.
J.Mol.Biol., 427, 2015
3MB5
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CRYSTAL STRUCTURE OF P. ABYSSI TRNA M1A58 METHYLTRANSFERASE IN COMPLEX WITH S-ADENOSYL-L-METHIONINE
Descriptor:SAM-dependent methyltransferase, S-ADENOSYLMETHIONINE, SULFATE ION, ...
Authors:Guelorget, A., Golinelli-Pimpaneau, B.
Deposit date:2010-03-25
Release date:2010-05-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m1A57/58 methyltransferase.
Nucleic Acids Res., 38, 2010
3IM1
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STRUCTURE OF THE C-TERMINAL SEC63 UNIT OF YEAST BRR2, P212121 FORM
Descriptor:Pre-mRNA-splicing helicase BRR2
Authors:Pena, V., Hrmann, R.L., Wahl, M.C.
Deposit date:2009-08-09
Release date:2009-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase
To be Published
3IST
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CRYSTAL STRUCTURE OF GLUTAMATE RACEMASE FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH SUCCINIC ACID
Descriptor:Glutamate racemase, SUCCINIC ACID, CHLORIDE ION
Authors:Majorek, K.A., Chruszcz, M., Skarina, T., Onopriyenko, O., Stam, J., Anderson, W.F., Savchenko, A., Bujnicki, J.M., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-08-27
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of glutamate racemase from Listeria monocytogenes in complex with succinic acid
TO BE PUBLISHED
6G6S
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CRYSTAL STRUCTURE OF HUMAN ACINUS RNA RECOGNITION MOTIF DOMAIN
Descriptor:Apoptotic chromatin condensation inducer in the nucleus
Authors:Fernandes, H., Czapinska, H., Grudziaz, K., Bujnicki, J.M., Nowacka, M.
Deposit date:2018-04-03
Release date:2018-06-27
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of human Acinus RNA recognition motif domain.
PeerJ, 6, 2018
3P2E
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STRUCTURE OF AN ANTIBIOTIC RELATED METHYLTRANSFERASE
Descriptor:16S rRNA methylase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Sivaraman, J., Husain, N.
Deposit date:2010-10-02
Release date:2010-11-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit.
Nucleic Acids Res., 2010
2PY2
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STRUCTURE OF HERRING TYPE II ANTIFREEZE PROTEIN
Descriptor:Antifreeze protein type II, CALCIUM ION
Authors:Liu, Y., Li, Z., Lin, Q., Seetharaman, J., Sivaraman, J., Hew, C.-L.
Deposit date:2007-05-15
Release date:2007-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Evolutionary Origin of Ca-Dependent Herring Type II Antifreeze Protein.
PLoS ONE, 2, 2007
3BM3
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RESTRICTION ENDONUCLEASE PSPGI-SUBSTRATE DNA COMPLEX
Descriptor:DNA (5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3'), PspGI restriction endonuclease, ...
Authors:Szczepanowski, R.H., Carpenter, M., Czapinska, H., Tamulaitis, G., Siksnys, V., Bhagwat, A., Bochtler, M.
Deposit date:2007-12-12
Release date:2008-09-16
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A direct crystallographic demonstration that Type II restriction endonuclease PspGI flips nucleotides
To be Published
2R60
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STRUCTURE OF APO SUCROSE PHOSPHATE SYNTHASE (SPS) OF HALOTHERMOTHRIX ORENII
Descriptor:Glycosyl transferase, group 1
Authors:Sivaraman, J., Chua, T.K.
Deposit date:2007-09-05
Release date:2008-06-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of Sucrose Phosphate Synthase from Halothermothrix orenii Reveals Its Mechanism of Action and Binding Mode.
Plant Cell, 20, 2008
4OUN
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CRYSTAL STRUCTURE OF MINI-RIBONUCLEASE 3 FROM BACILLUS SUBTILIS
Descriptor:Mini-ribonuclease 3
Authors:Chojnowski, G., Czarnecka, J., Nowak, E., Pianka, D., Glow, D., Sabala, I., Skowronek, K., Nowotny, M., Bujnicki, J.M.
Deposit date:2014-02-18
Release date:2015-02-04
Last modified:2015-07-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sequence-specific cleavage of dsRNA by Mini-III RNase
Nucleic Acids Res., 43, 2015
3ISV
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CRYSTAL STRUCTURE OF GLUTAMATE RACEMASE FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH ACETATE ION
Descriptor:Glutamate racemase, ACETATE ION, CALCIUM ION, ...
Authors:Majorek, K.A., Chruszcz, M., Skarina, T., Onopriyenko, O., Stam, J., Anderson, W.F., Savchenko, A., Bujnicki, J.M., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-08-27
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of glutamate racemase from Listeria monocytogenes in complex with acetate ion
To be Published
3PB3
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STRUCTURE OF AN ANTIBIOTIC RELATED METHYLTRANSFERASE
Descriptor:16S rRNA methylase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Sivaraman, J., Husain, N.
Deposit date:2010-10-20
Release date:2010-11-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit.
Nucleic Acids Res., 2010
4N49
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CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1 PROTEIN IN COMPLEX WITH M7GPPPG AND SAM
Descriptor:Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, S-ADENOSYLMETHIONINE, 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
Deposit date:2013-10-08
Release date:2014-01-22
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.
Nat Commun, 5, 2014
6FQ3
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CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS IN COMPLEX WITH LIN-29A 5'UTR 13MER RNA
Descriptor:E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3'), CHLORIDE ION
Authors:Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.
Deposit date:2018-02-13
Release date:2018-05-09
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
3TM4
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CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH S-ADENOSYLMETHIONINE
Descriptor:tRNA (guanine N2-)-methyltransferase Trm14, S-ADENOSYLMETHIONINE
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
3IM2
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STRUCTURE OF THE C-TERMINAL SEC63 UNIT OF YEAST BRR2, P41212 FORM
Descriptor:Pre-mRNA-splicing helicase BRR2, TETRAETHYLENE GLYCOL
Authors:Pena, V., Hrmann, R.L., Wahl, M.C.
Deposit date:2009-08-09
Release date:2009-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase
To be Published
2OG4
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STRUCTURE OF AN EXPANDED JAB1-MPN-LIKE DOMAIN OF SPLICING FACTOR PRP8P FROM YEAST
Descriptor:Pre-mRNA-splicing factor 8
Authors:Pena, V., Liu, S., Luehrmann, R., Wahl, M.C.
Deposit date:2007-01-05
Release date:2007-03-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a multipartite protein-protein interaction domain in splicing factor prp8 and its link to retinitis pigmentosa.
Mol.Cell, 25, 2007
3C0K
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CRYSTAL STRUCTURE OF A RIBOSOMAL RNA METHYLTRANFERASE
Descriptor:UPF0064 protein yccW
Authors:Subramanian, S., Jayaraman, S., Bujnicki, J.
Deposit date:2008-01-21
Release date:2008-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes
J.Mol.Biol., 383, 2008
3LCV
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CRYSTAL STRUCTURE OF ANTIBIOTIC RELATED METHYLTRANSFERASE
Descriptor:Sisomicin-gentamicin resistance methylase Sgm, S-ADENOSYLMETHIONINE
Authors:Sivaraman, J., Husain, N.
Deposit date:2010-01-11
Release date:2010-06-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.
Nucleic Acids Res., 2010
4YHV
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YEAST PRP3 C-TERMINAL FRAGMENT 325-469
Descriptor:U4/U6 small nuclear ribonucleoprotein PRP3, ACETIC ACID
Authors:Liu, S., Wahl, M.C.
Deposit date:2015-02-27
Release date:2015-07-22
Last modified:2015-09-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing.
Elife, 4, 2015
3LGA
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CRYSTAL STRUCTURE OF P. ABYSSI TRNA M1A58 METHYLTRANSFERASE IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE
Descriptor:SAM-dependent methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
Authors:Guelorget, A., Golinelli-Pimpaneau, B.
Deposit date:2010-01-20
Release date:2010-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Insights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m1A57/58 methyltransferase.
Nucleic Acids Res., 38, 2010
3TMA
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CRYSTAL STRUCTURE OF TRMN FROM THERMUS THERMOPHILUS
Descriptor:methyltransferase, PHOSPHATE ION
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
4ESJ
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RESTRICTION ENDONUCLEASE DPNI IN COMPLEX WITH TARGET DNA
Descriptor:Type-2 restriction enzyme DpnI, DNA (5'-D(*CP*TP*GP*GP*(6MA)P*TP*CP*CP*AP*G)-3'), ZINC ION, ...
Authors:Siwek, W., Czapinska, H., Bochtler, M., Bujnicki, J.M., Skowronek, K.
Deposit date:2012-04-23
Release date:2012-06-13
Last modified:2012-10-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.
Nucleic Acids Res., 40, 2012
2FCA
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THE STRUCTURE OF BSTRMB
Descriptor:tRNA (guanine-N(7)-)-methyltransferase, POTASSIUM ION
Authors:Zegers, I., Van Vliet, F., Bujnicki, J., Kosinski, J., Gigot, D., Droogmans, L.
Deposit date:2005-12-12
Release date:2006-08-15
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase.
Nucleic Acids Res., 34, 2006
2PJD
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CRYSTAL STRUCTURE OF 16S RRNA METHYLTRANSFERASE RSMC
Descriptor:Ribosomal RNA small subunit methyltransferase C
Authors:Sunita, S., Purta, E., Durawa, M., Tkaczuk, K.L., Bujnicki, J.M., Sivaraman, J.
Deposit date:2007-04-16
Release date:2007-07-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC
Nucleic Acids Res., 35, 2007
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