Author results

4YSR
  • Download 4ysr
  • View 4ysr
Molmil generated image of 4ysr
STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 16.6 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSS
  • Download 4yss
  • View 4yss
Molmil generated image of 4yss
STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 16.7 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diedrichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YST
  • Download 4yst
  • View 4yst
Molmil generated image of 4yst
STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 24.9 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSU
  • Download 4ysu
  • View 4ysu
Molmil generated image of 4ysu
STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 25.0 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
5B35
  • Download 5b35
  • View 5b35
Molmil generated image of 5b35
SERIAL FEMTOSECOND CRYSTALLOGRAPHY (SFX) OF GROUND STATE BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES DETERMINED USING 7-KEV X-RAY FREE ELECTRON LASER (XFEL) AT SACLA
Descriptor:Bacteriorhodopsin, RETINAL, (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, ...
Authors:Mizohata, E., Nakane, T., Suzuki, M.
Deposit date:2016-02-10
Release date:2016-11-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4H
  • Download 5d4h
  • View 5d4h
Molmil generated image of 5d4h
HIGH-RESOLUTION NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SYNCHROTRON RADIATION CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4I
  • Download 5d4i
  • View 5d4i
Molmil generated image of 5d4i
INTACT NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4J
  • Download 5d4j
  • View 5d4j
Molmil generated image of 5d4j
CHLORIDE-BOUND FORM OF A COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, CHLORIDE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7A
  • Download 5f7a
  • View 5f7a
Molmil generated image of 5f7a
NITRITE COMPLEX STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7B
  • Download 5f7b
  • View 5f7b
Molmil generated image of 5f7b
RESTING STATE STRUCTURE OF CUNIR FORM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5KXU
  • Download 5kxu
  • View 5kxu
Molmil generated image of 5kxu
STRUCTURE PROTEINASE K DETERMINED BY SACLA
Descriptor:Proteinase K, CALCIUM ION, NITRATE ION
Authors:Masuda, T., Suzuki, M., Inoue, S., Numata, K., Sugahara, M.
Deposit date:2016-07-20
Release date:2017-06-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Atomic resolution structure of serine protease proteinase K at ambient temperature.
Sci Rep, 7, 2017
5KXV
  • Download 5kxv
  • View 5kxv
Molmil generated image of 5kxv
STRUCTURE PROTEINASE K AT 0.98 ANGSTROMS
Descriptor:Proteinase K, NITRATE ION, GLYCEROL, ...
Authors:Masuda, T., Suzuki, M., Inoue, S., Numata, K., Sugahara, M.
Deposit date:2016-07-20
Release date:2017-06-07
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Atomic resolution structure of serine protease proteinase K at ambient temperature.
Sci Rep, 7, 2017
5WR8
  • Download 5wr8
  • View 5wr8
Molmil generated image of 5wr8
THAUMATIN STRUCTURE DETERMINED BY SACLA AT 1.55 ANGSTROM
Descriptor:Thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Suzuki, M., Inoue, S., Sugahara, M.
Deposit date:2016-12-01
Release date:2017-11-29
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WR9
  • Download 5wr9
  • View 5wr9
Molmil generated image of 5wr9
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WRA
  • Download 5wra
  • View 5wra
Molmil generated image of 5wra
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WRB
  • Download 5wrb
  • View 5wrb
Molmil generated image of 5wrb
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-20
Method:X-RAY DIFFRACTION (2.013 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WRC
  • Download 5wrc
  • View 5wrc
Molmil generated image of 5wrc
CRYSTAL STRUCTURE OF PROTEINASE K FROM ENGYODONTIUM ALBUM
Descriptor:Proteinase K, NITRATE ION, PRASEODYMIUM ION
Authors:Sugahara, M., Nakane, T., Suzuki, M., Masuda, T., Inoue, S., Numata, K.
Deposit date:2016-12-01
Release date:2017-11-29
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
1IU1
  • Download 1iu1
  • View 1iu1
Molmil generated image of 1iu1
CRYSTAL STRUCTURE OF HUMAN GAMMA1-ADAPTIN EAR DOMAIN
Descriptor:gamma1-adaptin
Authors:Nogi, T., Shiba, Y., Kawasaki, M., Shiba, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Takatsu, H., Nakayama, K., Wakatsuki, S.
Deposit date:2002-02-19
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain.
Nat.Struct.Biol., 9, 2002
1J2J
  • Download 1j2j
  • View 1j2j
Molmil generated image of 1j2j
CRYSTAL STRUCTURE OF GGA1 GAT N-TERMINAL REGION IN COMPLEX WITH ARF1 GTP FORM
Descriptor:ADP-ribosylation factor 1, ADP-ribosylation factor binding protein GGA1, MAGNESIUM ION, ...
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-01-05
Release date:2003-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
NAT.STRUCT.BIOL., 10, 2003
1JWF
  • Download 1jwf
  • View 1jwf
Molmil generated image of 1jwf
CRYSTAL STRUCTURE OF HUMAN GGA1 VHS DOMAIN.
Descriptor:ADP-ribosylation factor binding protein GGA1
Authors:Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.
Deposit date:2001-09-04
Release date:2002-03-06
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
Nature, 415, 2002
1JWG
  • Download 1jwg
  • View 1jwg
Molmil generated image of 1jwg
VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH CATION-INDEPENDENT M6PR C-TERMINAL PEPTIDE
Descriptor:ADP-ribosylation factor binding protein GGA1, Cation-independent mannose-6-phosphate receptor, IODIDE ION
Authors:Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.
Deposit date:2001-09-04
Release date:2002-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
Nature, 415, 2002
1O3X
  • Download 1o3x
  • View 1o3x
Molmil generated image of 1o3x
CRYSTAL STRUCTURE OF HUMAN GGA1 GAT DOMAIN
Descriptor:ADP-ribosylation factor binding protein GGA1
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-05-08
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of Membrane Recruitment of Gga by Arf in Lysosomal Protein Transport
Nat.Struct.Biol., 10, 2003
1O3Y
  • Download 1o3y
  • View 1o3y
Molmil generated image of 1o3y
CRYSTAL STRUCTURE OF MOUSE ARF1 (DELTA17-Q71L), GTP FORM
Descriptor:ADP-ribosylation factor 1, MAGNESIUM ION, GUANOSINE-5'-TRIPHOSPHATE
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-05-08
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
Nat.Struct.Biol., 10, 2003
1WR6
  • Download 1wr6
  • View 1wr6
Molmil generated image of 1wr6
CRYSTAL STRUCTURE OF GGA3 GAT DOMAIN IN COMPLEX WITH UBIQUITIN
Descriptor:ADP-ribosylation factor binding protein GGA3, ubiquitin
Authors:Kawasaki, M., Shiba, T., Shiba, Y., Yamaguchi, Y., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Kato, K., Nakayama, K., Wakatsuki, S.
Deposit date:2004-10-12
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular mechanism of ubiquitin recognition by GGA3 GAT domain.
Genes Cells, 10, 2005
2DCY
  • Download 2dcy
  • View 2dcy
Molmil generated image of 2dcy
CRYSTAL STRUCTURE OF BACILLUS SUBTILIS FAMILY-11 XYLANASE
Descriptor:Endo-1,4-beta-xylanase A, 1,4-DIETHYLENE DIOXIDE, D(-)-TARTARIC ACID
Authors:Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006