Author results

6E9T
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DHF58 FILAMENT
Descriptor:DHF58 filament
Authors:Lynch, E.M., Shen, H., Fallas, J.A., Kollman, J.M., Baker, D.
Deposit date:2018-08-01
Release date:2018-11-21
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:De novo design of self-assembling helical protein filaments.
Science, 362, 2018
6E9V
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DHF79 FILAMENT
Descriptor:DHF79 filament
Authors:Lynch, E.M., Shen, H., Fallas, J.A., Kollman, J.M., Baker, D.
Deposit date:2018-08-01
Release date:2018-11-21
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:De novo design of self-assembling helical protein filaments.
Science, 362, 2018
6E9X
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DHF91 FILAMENT
Descriptor:DHF91 filament
Authors:Lynch, E.M., Shen, H., Fallas, J.A., Kollman, J.M., Baker, D.
Deposit date:2018-08-01
Release date:2018-11-21
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:De novo design of self-assembling helical protein filaments.
Science, 362, 2018
6E9Y
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DHF38 FILAMENT
Descriptor:DHF38 filament
Authors:Lynch, E.M., Shen, H., Fallas, J.A., Kollman, J.M., Baker, D.
Deposit date:2018-08-01
Release date:2018-11-21
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:De novo design of self-assembling helical protein filaments.
Science, 362, 2018
6E9Z
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DHF119 FILAMENT
Descriptor:DHF119 filament
Authors:Lynch, E.M., Shen, H., Fallas, J.A., Kollman, J.M., Baker, D.
Deposit date:2018-08-01
Release date:2018-11-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:De novo design of self-assembling helical protein filaments.
Science, 362, 2018
6MRR
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DE NOVO DESIGNED PROTEIN FOLDIT1
Descriptor:Foldit1
Authors:Koepnick, B., Bick, M.J., Estep, R.D., Kleinfelter, S., Wei, L., Baker, D.
Deposit date:2018-10-15
Release date:2019-06-12
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:De novo protein design by citizen scientists
To Be Published
6MRS
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DE NOVO DESIGNED PROTEIN PEAK6
Descriptor:Peak6, SULFATE ION
Authors:Koepnick, B., Boykov, A., Baker, D.
Deposit date:2018-10-15
Release date:2019-06-12
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:De novo protein design by citizen scientists
To Be Published
6MSQ
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CRYSTAL STRUCTURE OF PRO-2.3
Descriptor:pRO-2.3
Authors:Boyken, S.E., Bick, M.J., Baker, D.
Deposit date:2018-10-17
Release date:2019-05-08
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:De novo design of tunable, pH-driven conformational changes.
Science, 364, 2019
6MSR
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CRYSTAL STRUCTURE OF PRO-2.5
Descriptor:pRO-2.5
Authors:Bick, M.J., Boyken, S.E., Baker, D.
Deposit date:2018-10-17
Release date:2019-05-08
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:De novo design of tunable, pH-driven conformational changes.
Science, 364, 2019
5V6P
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CRYOEM STRUCTURE OF THE ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE HRD1
Descriptor:ERAD-associated E3 ubiquitin-protein ligase HRD1
Authors:Schoebel, S., Mi, W., Stein, A., Rapoport, T.A., Liao, M.
Deposit date:2017-03-17
Release date:2017-08-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.
Nature, 548, 2017
5V7V
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CRYO-EM STRUCTURE OF ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3
Descriptor:ERAD-associated E3 ubiquitin-protein ligase component HRD3, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE
Authors:Mi, W., Schoebel, S., Stein, A., Rapoport, T.A., Liao, M.
Deposit date:2017-03-20
Release date:2017-08-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.
Nature, 548, 2017
3U0S
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CRYSTAL STRUCTURE OF AN ENZYME REDESIGNED THROUGH MULTIPLAYER ONLINE GAMING: CE6
Descriptor:Diisopropyl-fluorophosphatase, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Bale, J.B., Shen, B.W., Stoddard, B.L.
Deposit date:2011-09-29
Release date:2012-02-01
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Increased Diels-Alderase activity through backbone remodeling guided by Foldit players.
Nat.Biotechnol., 30, 2012
2LAE
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NMR SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE E. COLI LIPOPROTEIN BAMC
Descriptor:Lipoprotein 34
Authors:Pardi, A., Warner, L.
Deposit date:2011-03-11
Release date:2011-06-01
Last modified:2016-04-27
Method:SOLUTION NMR
Cite:Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set.
J.Mol.Biol., 411, 2011
2LAF
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NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE E. COLI LIPOPROTEIN BAMC
Descriptor:Lipoprotein 34
Authors:Pardi, A., Warner, L.
Deposit date:2011-03-11
Release date:2011-06-01
Last modified:2016-04-27
Method:SOLUTION NMR
Cite:Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set.
J.Mol.Biol., 411, 2011
6BE9
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SOLUTION STRUCTURE OF DE NOVO MACROCYCLE DESIGN7.1
Descriptor:T(DLY)NDT(DSG)(DPR)
Authors:Shortridge, M.D., Hosseinzadeh, P., Pardo-Avila, F., Varani, G., Baker, B.
Deposit date:2017-10-24
Release date:2017-12-27
Last modified:2018-01-17
Method:SOLUTION NMR
Cite:Comprehensive computational design of ordered peptide macrocycles.
Science, 358, 2017
6BEN
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SOLUTION STRUCTURE OF DE NOVO MACROCYCLE DESIGN8.2
Descriptor:(DAR)Q(DPR)(DGN)R(DGL)PQ
Authors:Shortridge, M.D., Hosseinzadeh, P., Pardo-Avila, F., Varani, G., Baker, B.
Deposit date:2017-10-25
Release date:2017-12-27
Method:SOLUTION NMR
Cite:Comprehensive computational design of ordered peptide macrocycles.
Science, 358, 2017
4DIU
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CRYSTAL STRUCTURE OF ENGINEERED PROTEIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR94
Descriptor:Engineered Protein PF00326
Authors:Seetharaman, J., Lew, S., Wang, D., Kohan, E., Patel, D., Whitehead, T., Fleishman, S., Ciccosanti, C., Xiao, R., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-01-31
Release date:2012-04-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR94
To be Published
2A0M
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ARGINASE SUPERFAMILY PROTEIN FROM TRYPANOSOMA CRUZI
Descriptor:ARGINASE SUPERFAMILY PROTEIN, CHLORIDE ION
Authors:Arakaki, T.L., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
Deposit date:2005-06-16
Release date:2005-07-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.603 Å)
Cite:Structural genomics of pathogenic protozoa: an overview.
Methods Mol.Biol., 426, 2008
2RKX
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THE 3D STRUCTURE OF CHAIN D, CYCLASE SUBUNIT OF IMIDAZOLEGLYCEROL_EVOLVEDCEROLPHOSPHATE SYNTHASE
Descriptor:Cyclase subunit of imidazoleglycerol_evolvedcerolphosphate synthase
Authors:Tawfik, D., Khersonsky, O., Albeck, S., Dym, O., Israel Structural Proteomics Center (ISPC)
Deposit date:2007-10-18
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Kemp elimination catalysts by computational enzyme design.
Nature, 453, 2008
3B5L
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CRYSTAL STRUCTURE OF A NOVEL ENGINEERED RETROALDOLASE: RA-61
Descriptor:Endoxylanase, SULFATE ION, AMMONIUM ION
Authors:Stoddard, B.L., Doyle, L.A.
Deposit date:2007-10-26
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:De novo computational design of retro-aldol enzymes.
Science, 319, 2008
3DMK
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CRYSTAL STRUCTURE OF DOWN SYNDROME CELL ADHESION MOLECULE (DSCAM) ISOFORM 1.30.30, N-TERMINAL EIGHT IG DOMAINS
Descriptor:Down Syndrome Cell Adhesion Molecule (DSCAM) isoform 1.30.30, N-terminal eight Ig domains, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Sawaya, M.R., Wojtowicz, W.M., Eisenberg, D., Zipursky, S.L.
Deposit date:2008-07-01
Release date:2008-10-07
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (4.19 Å)
Cite:A double S shape provides the structural basis for the extraordinary binding specificity of Dscam isoforms.
Cell(Cambridge,Mass.), 134, 2008
3HOJ
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CRYSTAL STRUCTURE OF A NOVEL ENGINEERED RETROALDOLASE: RA-22
Descriptor:RETROALDOLASE-22
Authors:Stoddard, B.L., Doyle, L.A.
Deposit date:2009-06-02
Release date:2009-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:De Novo Computational Design of Retro-Aldol Enzymes
Science, 319, 2008
3NR6
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CRYSTAL STRUCTURE OF XENOTROPIC MURINE LEUKEMIA VIRUS-RELATED VIRUS (XMRV) PROTEASE
Descriptor:Protease p14, POTASSIUM ION, PHOSPHATE ION
Authors:Lubkowski, J., Li, M., Gustchina, A., Zhou, D., Dauter, Z., Wlodawer, A.
Deposit date:2010-06-30
Release date:2011-02-02
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of XMRV protease differs from the structures of other retropepsins.
Nat.Struct.Mol.Biol., 18, 2011
3PPD
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GGVLVN SEGMENT FROM HUMAN PROSTATIC ACID PHOSPHATASE RESIDUES 260-265, INVOLVED IN SEMEN-DERIVED ENHANCER OF VIRAL INFECTION
Descriptor:GGVLVN peptide, amyloid forming segment, ZINC ION, ...
Authors:Zhao, A., Sawaya, M.R., Eisenberg, D.
Deposit date:2010-11-24
Release date:2011-06-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation.
Nature, 475, 2011
3Q6O
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OXIDOREDUCTASE FRAGMENT OF HUMAN QSOX1
Descriptor:Sulfhydryl oxidase 1, SULFATE ION
Authors:Fass, D., Alon, A.
Deposit date:2011-01-03
Release date:2012-05-30
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The dynamic disulphide relay of quiescin sulphydryl oxidase.
Nature, 488, 2012