Author results

134D
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SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES
Descriptor:DNA TRIPLEX
Authors:Patel, D.J., Radhakrishnan, I.
Deposit date:1993-08-30
Release date:1994-04-30
Last modified:2015-04-15
Method:SOLUTION NMR
Cite:Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.
Structure, 1, 1993
139D
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SOLUTION STRUCTURE OF A PARALLEL-STRANDED G-QUADRUPLEX DNA
Descriptor:DNA (5'-D(*TP*TP*GP*GP*GP*GP*T)-3')
Authors:Patel, D.J., Wang, Y.
Deposit date:1993-09-28
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a parallel-stranded G-quadruplex DNA.
J.Mol.Biol., 234, 1993
1HWV
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MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY
Descriptor:5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3', (1S)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL
Authors:Patel, D.J., Lin, C.H., Geacintov, N.E., Broyde, S., Huang, X., Kolbanovskii, A., Hingerty, B.E., Amin, S.
Deposit date:2001-01-10
Release date:2001-03-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity.
J.Mol.Biol., 306, 2001
1HX4
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MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY
Descriptor:5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3', (1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL
Authors:Patel, D.J., Lin, C.H., Geacintov, N.E., Broyde, S., Huang, X., Kolbanovskii, A., Hingerty, B.E., Amin, S.
Deposit date:2001-01-11
Release date:2001-03-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity.
J.Mol.Biol., 306, 2001
4IUR
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CRYSTAL STRUCTURE OF SHH1 SAWADEE DOMAIN IN COMPLEX WITH H3K9ME3 PEPTIDE
Descriptor:SHH1 SAWADEE, Histone H3.2, H3(1-15)K9me3, ...
Authors:Patel, D.J., Du, J.
Deposit date:2013-01-21
Release date:2013-05-01
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.
Nature, 498, 2013
149D
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SOLUTION STRUCTURE OF A PYRIMIDINE(DOT)PURINE(DOT) PYRIMIDINE DNA TRIPLEX CONTAINING T(DOT)AT, C+(DOT)GC AND G(DOT)TA TRIPLES
Descriptor:5'-D(*CP*CP*TP*AP*TP*TP*C)-3', 5'-D(*GP*AP*AP*TP*AP*GP*G)-3', 5'-D(*CP*TP*TP*GP*TP*CP*C)-3'
Authors:Radhakrishnan, I., Patel, D.J.
Deposit date:1993-11-15
Release date:1994-04-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T.AT, C+.GC and G.TA triples.
Structure, 2, 1994
135D
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SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES
Descriptor:DNA TRIPLEX
Authors:Radhakrishnan, I., Patel, D.J.
Deposit date:1993-08-30
Release date:1994-04-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.
Structure, 1, 1993
136D
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SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES
Descriptor:DNA TRIPLEX
Authors:Radhakrishnan, I., Patel, D.J.
Deposit date:1993-08-30
Release date:1994-04-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.
Structure, 1, 1993
1PIK
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ESPERAMICIN A1-DNA COMPLEX, NMR, 4 STRUCTURES
Descriptor:DNA (5'-D(C*GP*GP*AP*TP*CP*CP*GP)-3'), 2,4-DIDEOXY-4-[2-(PROPYL)AMINO]-3-O-METHYL ALPHA-L-THREO-PENTOPYRANOSIDE, 4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE), ...
Authors:Kumar, R.A., Ikemoto, N., Patel, D.J.
Deposit date:1996-12-11
Release date:1997-03-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Esperamicin A1-DNA Complex
J.Mol.Biol., 265, 1997
1SLO
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FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:RNA (5'-R(*UP*UP*AP*CP*CP*CP*AP*AP*GP*UP*UP*UP*GP*AP*GP*GP*UP*AP*A)-3')
Authors:Greenbaum, N.L., Radhakrishnan, I., Patel, D.J., Hirsh, D.
Deposit date:1996-05-24
Release date:1996-12-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the donor site of a trans-splicing RNA.
Structure, 4, 1996
1SLP
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FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, 16 STRUCTURES
Descriptor:RNA (5'-R(*UP*UP*AP*CP*CP*CP*AP*AP*GP*UP*UP*UP*GP*AP*GP*GP*UP*AP*A)-3')
Authors:Greenbaum, N.L., Radhakrishnan, I., Patel, D.J., Hirsh, D.
Deposit date:1996-05-24
Release date:1997-04-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the donor site of a trans-splicing RNA.
Structure, 4, 1996
2PIK
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CALICHEAMICIN GAMMA1I-DNA COMPLEX, NMR, 6 STRUCTURES
Descriptor:DNA(5'-D(C*AP*CP*TP*CP*CP*TP*GP*GP*TP*TP*TP*TP* TP*GP*TP*GP*AP*GP*GP*AP*CP*CP)-3'), 4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE, 2,6-DIDEOXY-4-THIO-BETA-D-ALLOSEPYRANOSIDE, ...
Authors:Kumar, R.A., Ikemoto, N., Patel, D.J.
Deposit date:1996-12-31
Release date:1997-05-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the calicheamicin gamma 1I-DNA complex.
J.Mol.Biol., 265, 1997
3QLC
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COMPLEX STRUCTURE OF ATRX ADD DOMAIN BOUND TO UNMODIFIED H3 1-15 PEPTIDE
Descriptor:Transcriptional regulator ATRX, peptide of Histone H3.3, ZINC ION
Authors:Li, H., Patel, D.J.
Deposit date:2011-02-02
Release date:2011-06-15
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome
Nat.Struct.Mol.Biol., 18, 2011
3QLN
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CRYSTAL STRUCTURE OF ATRX ADD DOMAIN IN FREE STATE
Descriptor:Transcriptional regulator ATRX, ZINC ION
Authors:Li, H., Patel, D.J.
Deposit date:2011-02-03
Release date:2011-06-15
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome
Nat.Struct.Mol.Biol., 18, 2011
4NJ5
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CRYSTAL STRUCTURE OF SUVH9
Descriptor:Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9, ZINC ION
Authors:Du, J., Patel, D.J.
Deposit date:2013-11-08
Release date:2014-01-22
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.
Nature, 507, 2014
107D
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SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX
Descriptor:DNA (5'-D(*CP*CP*TP*TP*TP*TP*C)-3'), DNA (5'-D(*GP*AP*AP*AP*AP*GP*G)-3'), 4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER
Authors:Lin, C.H., Patel, D.J.
Deposit date:1995-01-17
Release date:1995-05-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the covalent duocarmycin A-DNA duplex complex.
J.Mol.Biol., 248, 1995
143D
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SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX
Descriptor:DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
Authors:Wang, Y., Patel, D.J.
Deposit date:1993-10-08
Release date:1994-04-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex.
Structure, 1, 1993
146D
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SOLUTION STRUCTURE OF THE MITHRAMYCIN DIMER-DNA COMPLEX
Descriptor:DNA (5'-D(*TP*CP*GP*CP*GP*A)-3'), 2,6-DIDEOXY-BETA-D-GLUCOSE, 2,6-DIDEOXY-BETA-D-GALACTOSE, ...
Authors:Sastry, M., Patel, D.J.
Deposit date:1993-11-09
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the mithramycin dimer-DNA complex.
Biochemistry, 32, 1993
177D
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SOLUTION STRUCTURE AND HYDRATION PATTERNS OF A PYRIMIDINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING A NOVEL T(DOT)CG TRIPLE
Descriptor:DNA (5'-D(*GP*AP*AP*CP*AP*GP*GP*TP*TP*TP*TP*T*CP*CP*TP*GP*TP*TP*CP*TP*TP*TP*TP*T*CP*TP*TP*TP*TP*CP*C)-3')
Authors:Radhakrishnan, I., Patel, D.J.
Deposit date:1994-05-24
Release date:1994-10-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base-triple.
J.Mol.Biol., 241, 1994
179D
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SOLUTION STRUCTURE OF THE D(T-C-G-A) DUPLEX AT ACIDIC PH: A PARALLEL-STRANDED HELIX CONTAINING C+.C, G.G AND A.A PAIRS
Descriptor:DNA (5'-D(*TP*CP*GP*A)-3')
Authors:Wang, Y., Patel, D.J.
Deposit date:1994-06-15
Release date:1994-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the d(T-C-G-A) duplex at acidic pH. A parallel-stranded helix containing C+ .C, G.G and A.A pairs.
J.Mol.Biol., 242, 1994
186D
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SOLUTION STRUCTURE OF THE TETRAHYMENA TELOMERIC REPEAT D(T2G4)4 G-TETRAPLEX
Descriptor:DNA (5'-D(*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*G)-3')
Authors:Wang, Y., Patel, D.J.
Deposit date:1994-08-22
Release date:1994-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex.
Structure, 2, 1994
193D
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SOLUTION STRUCTURE OF A QUINOMYCIN BISINTERCALATOR-DNA COMPLEX
Descriptor:DNA (5'-D(*AP*CP*AP*CP*GP*TP*GP*T)-3'), QUINOMYCIN, 3-HYDROXYQUINALDIC ACID
Authors:Chen, H., Patel, D.J.
Deposit date:1994-09-30
Release date:1995-02-27
Last modified:2017-11-01
Method:SOLUTION NMR
Cite:Solution Structure of a Quinomycin Bisintercalator-DNA Complex.
J.Mol.Biol., 246, 1995
199D
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SOLUTION STRUCTURE OF THE MONOALKYLATED MITOMYCIN C-DNA COMPLEX
Descriptor:DNA (5'-D(*(DI)P*CP*AP*CP*GP*TP*CP*(DI)P*T)-3'), DNA (5'-D(*AP*CP*GP*AP*CP*GP*TP*GP*C)-3'), CARBAMIC ACID 2,6-DIAMINO-5-METHYL-4,7-DIOXO-2,3,4,7-TETRAHYDRO-1H-3A-AZA-CYCLOPENTA[A]INDEN-8-YLMETHYL ESTER
Authors:Sastry, M., Fiala, R., Lipman, R., Tomasz, M., Patel, D.J.
Deposit date:1994-12-01
Release date:1995-02-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the monoalkylated mitomycin C-DNA complex.
J.Mol.Biol., 247, 1995
1A4T
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SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES
Descriptor:BOXB RNA, 20-MER BASIC PEPTIDE
Authors:Cai, Z., Gorin, A.A., Frederick, R., Ye, X., Hu, W., Majumdar, A., Kettani, A., Patel, D.J.
Deposit date:1998-02-04
Release date:1998-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex.
Nat.Struct.Biol., 5, 1998
1A6H
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DNA QUADRUPLEX CONTAINING GCGC TETRAD, NMR, 4 STRUCTURES
Descriptor:DNA (5'-D(GP*CP*GP*GP*TP*TP*TP*GP*CP*GP*G)-3')
Authors:Kettani, A., Kumar, R.A., Patel, D.J.
Deposit date:1998-02-25
Release date:1998-06-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat.
J.Mol.Biol., 254, 1995
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