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PDB: 71 results

5H4P
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Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Ma, C, Wu, S, Li, N, Chen, Y, Yan, K, Li, Z, Zheng, L, Lei, J, Woolford, J.L, Gao, N.
Deposit date:2016-11-01
Release date:2017-01-25
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1
Nat. Struct. Mol. Biol., 24, 2017
5H5U
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Mechanistic insights into the alternative translation termination by ArfA and RF2
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ma, C, Kurita, D, Li, N, Chen, Y, Himeno, H, Gao, N.
Deposit date:2016-11-09
Release date:2017-01-25
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mechanistic insights into the alternative translation termination by ArfA and RF2
Nature, 541, 2017
7VHP
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BU of 7vhp by Molmil
Structural insights into the membrane microdomain organization by SPFH family proteins
Descriptor: ATP-dependent zinc metalloprotease FtsH, Modulator of FtsH protease HflC, Protein HflK
Authors:Ma, C.Y, Wang, C.K, Luo, D.Y, Yan, L, Yang, W.X, Li, N.N, Gao, N.
Deposit date:2021-09-22
Release date:2022-03-23
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Structural insights into the membrane microdomain organization by SPFH family proteins.
Cell Res., 32, 2022
4Z9E
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Alba from Thermoplasma volcanium
Descriptor: DNA/RNA-binding protein Alba
Authors:Ma, C, Lee, S.J, Pathak, C, Lee, B.J.
Deposit date:2015-04-10
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Alba from Thermoplasma volcanium belongs to alpha-NAT's: An insight into the structural aspects of Tv Alba and its acetylation by Tv Ard1.
Arch.Biochem.Biophys., 590, 2016
4PV6
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BU of 4pv6 by Molmil
Crystal Structure Analysis of Ard1 from Thermoplasma volcanium
Descriptor: ACETYL COENZYME *A, COENZYME A, N-terminal acetyltransferase complex subunit [ARD1]
Authors:Ma, C, Lee, S.J, Lee, B.J.
Deposit date:2014-03-15
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Structure of Thermoplasma volcanium Ard1 belongs to N-acetyltransferase family member suggesting multiple ligand binding modes with acetyl coenzyme A and coenzyme A.
Biochim.Biophys.Acta, 1844, 2014
7VHQ
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Structural insights into the membrane microdomain organization by SPFH family proteins
Descriptor: ATP-dependent zinc metalloprotease FtsH, Modulator of FtsH protease HflC, Protein HflK
Authors:Ma, C.Y, Wang, C.K, Luo, D.Y, Yan, L, Yang, W.X, Li, N.N, Gao, N.
Deposit date:2021-09-22
Release date:2022-01-19
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Structural insights into the membrane microdomain organization by SPFH family proteins.
Cell Res., 32, 2022
6K6U
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BU of 6k6u by Molmil
Crystal structure of the human YTHDC2 YTH domain
Descriptor: 3'-5' RNA helicase YTHDC2
Authors:Ma, C, Liao, S, Xu, C.
Deposit date:2019-06-04
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of human YTHDC2 YTH domain.
Biochem.Biophys.Res.Commun., 518, 2019
4PQP
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BU of 4pqp by Molmil
Crystal structure of human SNX14 PX domain in space group P43212
Descriptor: GLYCEROL, Sorting nexin-14
Authors:Mas, C, Norwood, S, Bugarcic, A, Kinna, G, Leneva, N, Kovtun, O, Teasdale, R, Collins, B.
Deposit date:2014-03-03
Release date:2014-09-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Basis for Different Phosphoinositide Specificities of the PX Domains of Sorting Nexins Regulating G-protein Signaling.
J.Biol.Chem., 289, 2014
2KI2
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BU of 2ki2 by Molmil
Solution Structure of ss-DNA Binding Protein 12RNP2 Precursor, HP0827(O25501_HELPY) form Helicobacter pylori
Descriptor: Ss-DNA binding protein 12RNP2
Authors:Ma, C, Lee, J, Kim, J, Park, S, Kwon, A, Lee, B.
Deposit date:2009-04-20
Release date:2009-10-20
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:NMR solution structure of HP0827 (O25501_HELPY) from Helicobacter pylori: model of the possible RNA-binding site
J.Biochem., 146, 2009
6ITC
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BU of 6itc by Molmil
Structure of a substrate engaged SecA-SecY protein translocation machine
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Ma, C.Y, Wu, X.F, Sun, D.J, Park, E.Y, Rapoport, T.A, Gao, N, Long, L.
Deposit date:2018-11-21
Release date:2019-06-12
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structure of the substrate-engaged SecA-SecY protein translocation machine.
Nat Commun, 10, 2019
2L2I
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NMR Structure of the complex between the Tfb1 subunit of TFIIH and the activation domain of EKLF
Descriptor: Krueppel-like factor 1, RNA polymerase II transcription factor B subunit 1
Authors:Mas, C, Di Lello, P, Lafrance-Vanasse, J, Omichinski, J.G.
Deposit date:2010-08-18
Release date:2011-07-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Structure of the complex between the Tfb1 subunit of TFIIH and the activation domain of EKLF
To be Published
7WD3
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Cryo-EM structure of Drg1 hexamer treated with ATP and benzo-diazaborine
Descriptor: 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL, ADENOSINE-5'-TRIPHOSPHATE, ATPase family gene 2 protein
Authors:Ma, C.Y, Wu, D.M, Chen, Q, Gao, N.
Deposit date:2021-12-21
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition.
Nat Commun, 13, 2022
7WBB
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BU of 7wbb by Molmil
Cryo-EM structure of substrate engaged Drg1 hexamer
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AFG2 isoform 1, substrate
Authors:Ma, C.Y, Wu, D.M, Chen, Q, Gao, N.
Deposit date:2021-12-16
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition.
Nat Commun, 13, 2022
7YKK
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BU of 7ykk by Molmil
Cryo-EM structure of Drg1 hexamer treated with ADP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATPase family gene 2 protein
Authors:Ma, C.Y, Wu, D.M, Chen, Q, Gao, N.
Deposit date:2022-07-22
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (5.9 Å)
Cite:Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition.
Nat Commun, 13, 2022
7YKZ
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BU of 7ykz by Molmil
Cryo-EM structure of Drg1 hexamer in the planar state treated with ADP/AMPPNP/Diazaborine
Descriptor: 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Ma, C.Y, Wu, D.M, Chen, Q, Gao, N.
Deposit date:2022-07-25
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition.
Nat Commun, 13, 2022
7YKT
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BU of 7ykt by Molmil
Cryo-EM structure of Drg1 hexamer in helical state treated with ADP/AMPPNP/benzo-diazaborine
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family gene 2 protein
Authors:Ma, C.Y, Wu, D.M, Chen, Q, Gao, N.
Deposit date:2022-07-23
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (5.9 Å)
Cite:Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition.
Nat Commun, 13, 2022
7YKL
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BU of 7ykl by Molmil
Cryo-EM structure of Drg1 hexamer treated with AMPPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATPase family gene 2 protein
Authors:Ma, C.Y, Wu, D.M, Chen, Q, Gao, N.
Deposit date:2022-07-22
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition.
Nat Commun, 13, 2022
4PQO
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BU of 4pqo by Molmil
Structure of the human SNX14 PX domain in space group I41
Descriptor: Sorting nexin-14
Authors:Mas, C, Norwood, S, Bugarcic, A, Kinna, G, Leneva, N, Kovtun, O, Teasdale, R, Collins, B.
Deposit date:2014-03-03
Release date:2014-09-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural Basis for Different Phosphoinositide Specificities of the PX Domains of Sorting Nexins Regulating G-protein Signaling.
J.Biol.Chem., 289, 2014
5GSQ
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BU of 5gsq by Molmil
Crystal structure of IgG Fc with a homogeneous glycoform and Antibody-Dependent Cellular Cytotoxicity
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chen, C.-L, Hsu, J.-C, Lin, C.-W, Wu, C.-Y, Wong, C.-H, Ma, C.
Deposit date:2016-08-17
Release date:2017-06-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of a Homogeneous IgG-Fc Glycoform with the N-Glycan Designed to Maximize the Antibody Dependent Cellular Cytotoxicity
ACS Chem. Biol., 12, 2017
6WTT
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BU of 6wtt by Molmil
Crystals Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor GC-376
Descriptor: (1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase, ...
Authors:Sacco, M, Ma, C, Chen, Y, Wang, J.
Deposit date:2020-05-03
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Boceprevir, GC-376, and calpain inhibitors II, XII inhibit SARS-CoV-2 viral replication by targeting the viral main protease.
Cell Res., 30, 2020
3JCT
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BU of 3jct by Molmil
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Descriptor: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
Authors:Wu, S, Kumcuoglu, B, Yan, K.G, Brown, H, Zhang, Y.X, Tan, D, Gamalinda, M, Yuan, Y, Li, Z.F, Jakovljevic, J, Ma, C.Y, Lei, J.L, Dong, M.Q, Woolford Jr, J.L, Gao, N.
Deposit date:2016-03-09
Release date:2016-06-01
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes
Nature, 534, 2016
1ZXO
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BU of 1zxo by Molmil
X-ray Crystal Structure of Protein Q8A1P1 from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium Target BtR25.
Descriptor: conserved hypothetical protein Q8A1P1
Authors:Kuzin, A.P, Yong, W, Forouhar, F, Vorobiev, S, Xiao, R, Ma, C, Acton, T, Montelione, G.T, Hunt, J, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-06-08
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:X-Ray structure of the hypothetical protein Q8A1P1 at the resolution 3.2A. Northeast Structural Genomics Consortium target BtR25.
To be Published
2AJA
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BU of 2aja by Molmil
X-Ray structure of an ankyrin repeat family protein Q5ZSV0 from Legionella pneumophila. Northeast Structural Genomics Consortium target LgR21.
Descriptor: ankyrin repeat family protein
Authors:Kuzin, A.P, Chen, Y, Acton, T, Xiao, R, Conover, K, Ma, C, Kellie, R, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-08-01
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-Ray structure of an ankyrin repeat family protein Q5ZSV0 from Legionella pneumophila.
To be Published
2XA8
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BU of 2xa8 by Molmil
Crystal structure of the Fab domain of omalizumab at 2.41A
Descriptor: OMALIZUMAB HEAVY CHAIN, OMALIZUMAB LIGHT CHAIN
Authors:Huang, C.H, Hung, F.H.A, Lim, C, Chang, T.W, Ma, C.
Deposit date:2010-03-30
Release date:2011-05-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structural and Physical Basis for Anti-IgE Therapy.
Sci Rep, 5, 2015
2IEE
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BU of 2iee by Molmil
Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics Consortium target SR574.
Descriptor: Probable ABC transporter extracellular-binding protein yckB
Authors:Kuzin, A.P, Su, M, Jayaraman, S, Chen, X.C, Jang, M, Cunningham, K, Ma, C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-09-18
Release date:2006-10-03
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of probable ABC transporter extracellular-binding protein yckB from Bacillus subtilis.
To be Published

 

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