News on 2009-03-18 ... in this process are available at PDBj PDB Archive/Snapshot Archive or http://www.wwpdb.org/downloads.html. For users who make local copies of ... |
PDBj luncheon seminar at APBJC 2024 ... several new policies: (i) Collection of ORCID (Open Researcher and Contributor ID: http://orcid.org/) for contact authors and login using ORCID has started already ... |
News on 2009-09-25 The changes to the wwPDB FTP site has been announced as "The advisory notice" at http://www.wwpdb.org/. (September 25, 2009) |
[wwPDB] Access SDF/MOL formatted CCD files from the PDB archive ... /monomers/components-pub.sdf.gz and accessible from the wwPDB website at http://www.wwpdb.org/data/ccd. Please contact info@wwpdb.org with any ... |
News on 2009-11-24 ... or XPath, xPSSS will still be available, only for the purpose, at http://service.pdbj.org/xPSSS/. |
Rest interface examples ... the screen). The above code requires a json parser (rjson) and a HTTP fetch module (RCurl), which can both be downloaded via the CRAN repository. |
Quick Links ... released as single files in PDBx/mmCIF and PDBML/XML formats. URL: http://pdbj.org/PDBSearchOnly?query=tag:large_structures Group Depositions Group Depositions are ... |
PDBj has released the electron density maps in the ccp4 format. ... file of each entry is downloaded from Electron Density Map page through http protocol. The ccp4 formatted files of all entries that have Electron Density ... |
News on 2014-12-3 ... jV as applet. For stand alone jV, this update is not necessary. http://pdbj.org/jv/index.html#download |
News on 2015-10-2 New version of jV (4.4.4), fixed the bug involved in the polygon display in Windows, was released. http://pdbj.org/jv/ |
PDBML-noatom ... PDBML-noatom file is the same as the PDBML file provided at - http://pdbj.org/schema/pdbx-v50.xsd And can also be viewed using ... |
Structure factors ... specific tokens, please refer to the mmCIF dictionary of RCSB PDB at: http://mmcif.pdb.org/dictionaries/mmcif_pdbx.dic/Categories/refln.html |
Deposition and Release of PDB Entries Containing Large Structures ... , often determined using multiple methods, the Worldwide Protein Data Bank partners (wwPDB: http://wwpdb.org/) are developing a completely new system for deposition and annotation ... |
We has frozen the PDBMLplus on PDBj FTP site. ... on demand for each request from PDBML and additional information (PDBMLadd): Example: http://service.pdbj.org/mine/pdbmlplus/noatom/100d - You can also access the ... |
SeSAW Tutorial ... your query will be stored for 2 weeks at the following URL: http://pdbjc01.protein.osaka-u.ac.jp:8888/tmp/SS17645/2czlA_top.html ... |
Impact of PDBx/mmCIF v5 upgrade on PDBj services ... entries in the FTP will be upgraded to the new v5 dictionary ( http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Index/) (wwPDB News). Since ... |
OneDep deposition site is now accessible with HTTPS(\ OneDep deposition site is now accessible with HTTPS("secure"). Accesses to http are automatically redirected to https. |
The 12th AsCA will be held in Hong Kong from 7 to 10 December. Haruki Nakamura, Head of PDBj will give a poster presentation to introduce PDBj's web services and our latest activities. ... by semantic web technologies." The 12th Conference of the Asian Crystallographic Association (http://asca13.ust.hk/web/asca/index.php) - Date: 7-10 December 2013 ... |
MAFFTash MAFFTash URL: http://sysimm.org/MAFFTash// - Overview - Usage - Methods - Structural alignment Sequence alignment - Structural alignment - ... |
Download PDBETA ... the executable file for either Windows or Linux at the following site. http://swift.cmbi.ru.nl/gv/dssp/ The downloaded file should be put ... |
We'll finish to provide the PDBMLplus from FTP site. The default URL of PDBMLplus was changed in jV version 4.4 for this change. ... on demand for each request from PDBML and additional information (PDBMLadd): Example: http://service.pdbj.org/mine/pdbmlplus/noatom/100d As we need to hold ... |