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... released as single files in PDBx/mmCIF and PDBML/XML formats. URL: http://pdbj.org/PDBSearchOnly?query=tag:large_structures Group Depositions Group Depositions are ...

News on 2009-03-18

... in this process are available at PDBj PDB Archive/Snapshot Archive or http://www.wwpdb.org/downloads.html. For users who make local copies of ...

OneDep deposition site is now accessible with HTTPS(\

OneDep deposition site is now accessible with HTTPS("secure"). Accesses to http are automatically redirected to https.

News on 2009-02-13

... in this process are available at PDBj PDB Archive/Snapshot Archive or http://www.wwpdb.org/downloads.html. For users who make local copies of ...

PDBML-noatom

... PDBML-noatom file is the same as the PDBML file provided at - http://pdbj.org/schema/pdbx-v50.xsd And can also be viewed using ...

We'll finish to provide the PDBMLplus from FTP site. The default URL of PDBMLplus was changed in jV version 4.4 for this change.

... on demand for each request from PDBML and additional information (PDBMLadd): Example: http://service.pdbj.org/mine/pdbmlplus/noatom/100d As we need to hold ...

News on 2015-10-2

New version of jV (4.4.4), fixed the bug involved in the polygon display in Windows, was released. http://pdbj.org/jv/

PDBj has released the electron density maps in the ccp4 format.

... file of each entry is downloaded from Electron Density Map page through http protocol. The ccp4 formatted files of all entries that have Electron Density ...

We has frozen the PDBMLplus on PDBj FTP site.

... on demand for each request from PDBML and additional information (PDBMLadd): Example: http://service.pdbj.org/mine/pdbmlplus/noatom/100d - You can also access the ...

News on 2014-12-3

... jV as applet. For stand alone jV, this update is not necessary. http://pdbj.org/jv/index.html#download

The 12th AsCA will be held in Hong Kong from 7 to 10 December. Haruki Nakamura, Head of PDBj will give a poster presentation to introduce PDBj's web services and our latest activities.

... by semantic web technologies." The 12th Conference of the Asian Crystallographic Association (http://asca13.ust.hk/web/asca/index.php) - Date: 7-10 December 2013 ...

Deposition and Release of PDB Entries Containing Large Structures

... , often determined using multiple methods, the Worldwide Protein Data Bank partners (wwPDB: http://wwpdb.org/) are developing a completely new system for deposition and annotation ...

Download PDBETA

... the executable file for either Windows or Linux at the following site. http://swift.cmbi.ru.nl/gv/dssp/ The downloaded file should be put ...

SeSAW Tutorial

... your query will be stored for 2 weeks at the following URL: http://pdbjc01.protein.osaka-u.ac.jp:8888/tmp/SS17645/2czlA_top.html ...

MAFFTash

MAFFTash URL: http://sysimm.org/MAFFTash// - Overview - Usage - Methods - Structural alignment Sequence alignment - Structural alignment - ...

Rest interface examples

... the screen). The above code requires a json parser (rjson) and a HTTP fetch module (RCurl), which can both be downloaded via the CRAN repository.

Impact of PDBx/mmCIF v5 upgrade on PDBj services

... entries in the FTP will be upgraded to the new v5 dictionary ( http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Index/) (wwPDB News). Since ...

Structure factors

... specific tokens, please refer to the mmCIF dictionary of RCSB PDB at: http://mmcif.pdb.org/dictionaries/mmcif_pdbx.dic/Categories/refln.html

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