PDB: 8254 件ウェブページステータス検索Chemie searchBIRD

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6A5O	RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. 登録日 2018-06-25 公開日 2018-10-03 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (9.9 Å) 主引用文献 Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
7WBV	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome 分子名称: DNA (159-MER), DNA (198-MER), DNA-directed RNA polymerase subunit, ... 著者 Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H. 登録日 2021-12-17 公開日 2023-07-05 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome. J.Mol.Biol., 435, 2023
7WBW	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H. 登録日 2021-12-17 公開日 2023-07-05 実験手法 ELECTRON MICROSCOPY (7.1 Å) 主引用文献 Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome. J.Mol.Biol., 435, 2023
7WBX	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H. 登録日 2021-12-17 公開日 2023-07-05 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome. J.Mol.Biol., 435, 2023
4A93	RNA Polymerase II elongation complex containing a CPD Lesion 分子名称: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*T*TTP*TP*TP*CP*C BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP*AP)-3', ... 著者 Walmacq, C, Cheung, A.C.M, Kireeva, M.L, Lubkowska, L, Ye, C, Gotte, D, Strathern, J.N, Carell, T, Cramer, P, Kashlev, M. 登録日 2011-11-23 公開日 2012-03-21 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Mechanism of Translesion Transcription by RNA Polymerase II and its Role in Cellular Resistance to DNA Damage. Mol.Cell, 46, 2012
3FKI	12-Subunit RNA Polymerase II Refined with Zn-SAD data 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Meyer, P.A, Ye, P, Suh, M.H, Zhang, M, Fu, J. 登録日 2008-12-16 公開日 2009-03-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.88 Å) 主引用文献 Structure of the 12-Subunit RNA Polymerase II Refined with the Aid of Anomalous Diffraction Data J.Biol.Chem., 284, 2009
3H0G	RNA Polymerase II from Schizosaccharomyces pombe 分子名称: DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Spahr, H, Calero, G, Bushnell, D.A, Kornberg, R.D. 登録日 2009-04-09 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.65 Å) 主引用文献 Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution. Proc.Natl.Acad.Sci.USA, 106, 2009
1I3Q	RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION 分子名称: DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE, ... 著者 Cramer, P, Bushnell, D.A, Kornberg, R.D. 登録日 2001-02-15 公開日 2001-04-25 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science, 292, 2001
1I6H	RNA POLYMERASE II ELONGATION COMPLEX 分子名称: 5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3', 5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3', DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE, ... 著者 Gnatt, A.L, Cramer, P, Kornberg, R.D. 登録日 2001-03-02 公開日 2001-04-23 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution. Science, 292, 2001
1R5U	RNA POLYMERASE II TFIIB COMPLEX 分子名称: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, ... 著者 Bushnell, D.A, Westover, K.D, Davis, R, Kornberg, R.D. 登録日 2003-10-13 公開日 2004-02-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (4.5 Å) 主引用文献 Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms. Science, 303, 2004
1R9S	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE 分子名称: DNA strand, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, ... 著者 Westover, K.D, Bushnell, D.A, Kornberg, R.D. 登録日 2003-10-30 公開日 2004-11-16 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (4.25 Å) 主引用文献 Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell(Cambridge,Mass.), 119, 2004
1R9T	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA nontemplate strand, DNA template strand, ... 著者 Westover, K.D, Bushnell, D.A, Kornberg, R.D. 登録日 2003-10-30 公開日 2004-11-16 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell(Cambridge,Mass.), 119, 2004
1SFO	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX 分子名称: DNA STRAND, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, ... 著者 Westover, K.D, Bushnell, D.A, Kornberg, R.D. 登録日 2004-02-20 公開日 2004-03-02 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.61 Å) 主引用文献 Structural Basis of Transcription: Separation of RNA from DNA by RNA Polymerase II Science, 303, 2004
5FMF	the P-lobe of RNA polymerase II pre-initiation complex 分子名称: DNA REPAIR HELICASE RAD25, SSL2, DNA REPAIR HELICASE RAD3, ... 著者 Murakami, K, Tsai, K, Kalisman, N, Bushnell, D.A, Asturias, F.J, Kornberg, R.D. 登録日 2015-11-03 公開日 2015-11-25 最終更新日 2017-07-12 実験手法 ELECTRON MICROSCOPY (6 Å) 主引用文献 Structure of an RNA Polymerase II Pre-Initiation Complex Proc.Natl.Acad.Sci.USA, 112, 2015
4X67	Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions. 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2014-12-07 公開日 2015-02-04 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions. Proc.Natl.Acad.Sci.USA, 112, 2015
4X6A	Crystal structure of yeast RNA polymerase II encountering oxidative Cyclopurine DNA lesions 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2014-12-07 公開日 2015-02-04 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.96 Å) 主引用文献 Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions. Proc.Natl.Acad.Sci.USA, 112, 2015
4Y7N	The Structure Insight into 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation. 分子名称: DNA (29-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2015-02-15 公開日 2015-07-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex. Nature, 523, 2015
4Y52	Crystal structure of 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation. 分子名称: DNA (29-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2015-02-11 公開日 2015-07-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex. Nature, 523, 2015
7B0Y	Structure of a transcribing RNA polymerase II-U1 snRNP complex 分子名称: 145-nt RNA, DNA-directed RNA polymerase II subunit D, DNA-directed RNA polymerase II subunit E, ... 著者 Zhang, S, Aibara, S, Vos, S.M, Agafonov, D.E, Luehrmann, R, Cramer, P. 登録日 2020-11-23 公開日 2021-01-13 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of a transcribing RNA polymerase II-U1 snRNP complex. Science, 371, 2021
7B7U	Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Fianu, I, Dienemann, C, Aibara, S, Schilbach, S, Cramer, P. 登録日 2020-12-11 公開日 2021-05-19 最終更新日 2022-02-16 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Commun Biol, 4, 2021
5OIK	Structure of an RNA polymerase II-DSIF transcription elongation complex 分子名称: DNA (43-MER), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Bernecky, C, Plitzko, J.M, Cramer, P. 登録日 2017-07-18 公開日 2017-09-13 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
6XRE	Structure of the p53/RNA polymerase II assembly 分子名称: Cellular tumor antigen p53, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Liou, S.-H, Singh, S, Singer, R.H, Coleman, R.A, Liu, W. 登録日 2020-07-12 公開日 2021-03-24 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structure of the p53/RNA polymerase II assembly. Commun Biol, 4, 2021
8CEO	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, H, Cramer, P. 登録日 2023-02-02 公開日 2023-03-08 最終更新日 2023-04-19 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain. Proc.Natl.Acad.Sci.USA, 120, 2023
8CEN	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, H, Schilbach, S, Cramer, P. 登録日 2023-02-02 公開日 2023-03-22 最終更新日 2023-04-19 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain. Proc.Natl.Acad.Sci.USA, 120, 2023
6I84	Structure of transcribing RNA polymerase II-nucleosome complex 分子名称: DNA (158-MER), DNA (170-MER), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Farnung, L, Vos, S.M, Cramer, P. 登録日 2018-11-19 公開日 2019-01-02 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structure of transcribing RNA polymerase II-nucleosome complex. Nat Commun, 9, 2018

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