Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2HN7
DownloadVisualize
BU of 2hn7 by Molmil
HLA-A*1101 in complex with HBV peptide homologue
Descriptor: Beta-2-microglobulin, DNA polymerase PEPTIDE HOMOLOGUE, HLA class I histocompatibility antigen, ...
Authors:Blicher, T.
Deposit date:2006-07-12
Release date:2006-11-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of HLA-A*1101 in complex with a hepatitis B peptide homologue.
Acta Crystallogr.,Sect.F, 62, 2006
3P77
DownloadVisualize
BU of 3p77 by Molmil
Crystal Structures of the Chicken YF1*7.1 molecule
Descriptor: ACETATE ION, Beta-2-microglobulin, MHC Rfp-Y class I alpha chain, ...
Authors:Hee, C.S, Gao, S, Loll, B, Miller, M.M, Uchanska-Ziegler, B, Daumke, O, Ziegler, A.
Deposit date:2010-10-12
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a Classical MHC Class I Molecule That Binds "Non-Classical" Ligands.
Plos Biol., 8, 2010
7R7Y
DownloadVisualize
BU of 7r7y by Molmil
Crystal structure of HLA-B*5701 complex with an HIV-1 Gag-derived epitope QW9 S3T variant
Descriptor: Beta-2-microglobulin, GLN-ALA-THR-GLN-GLU-VAL-LYS-ASN-TRP, GLYCEROL, ...
Authors:Li, X.L, Ng, R, Tan, K.M, Walker, B.D, Wang, J.H.
Deposit date:2021-06-25
Release date:2022-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Molecular basis of differential HLA class I-restricted T cell recognition of a highly networked HIV peptide.
Nat Commun, 14, 2023
6K7U
DownloadVisualize
BU of 6k7u by Molmil
Crystal structure of beta-2 microglobulin (beta2m) of Bat (Pteropus Alecto)
Descriptor: Bat beta-2-microglobulin
Authors:Lu, D, Liu, K.F, Zhang, D, Yue, C, Lu, Q, Cheng, H, Chai, Y, Qi, J.X, Gao, F.G, Liu, W.J.
Deposit date:2019-06-08
Release date:2019-09-18
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol., 17, 2019
4NWU
DownloadVisualize
BU of 4nwu by Molmil
Crystal structure of APE1551, an anti-human NGF Fab with a nine amino acid insertion in CDR H1
Descriptor: APE1551 Ab Fab heavy chain, APE1551 Ab Fab light chain
Authors:Verdino, P, Stanfield, R.L, Wilson, I.A.
Deposit date:2013-12-06
Release date:2014-10-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Nucleotide insertions and deletions complement point mutations to massively expand the diversity created by somatic hypermutation of antibodies.
J.Biol.Chem., 289, 2014
6EI2
DownloadVisualize
BU of 6ei2 by Molmil
Crystal Structure of HLA-A68 presenting a C-terminally extended peptide
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, CADMIUM ION, ...
Authors:Picaud, S, Guillaume, P, Pike, A.C.W, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Gfeller, D, Filippakopoulos, P.
Deposit date:2017-09-16
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Crystal Structure of HLA-A68 presenting a C-terminally extended peptide
To Be Published
5WMO
DownloadVisualize
BU of 5wmo by Molmil
Crystal Structure of HLA-B7 in complex with RPP, an EBV peptide
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-7 alpha chain, ...
Authors:Gras, S, Rossjohn, J.
Deposit date:2017-07-30
Release date:2018-06-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses.
J. Immunol., 200, 2018
3V5H
DownloadVisualize
BU of 3v5h by Molmil
HLA-A2.1 KVAEIVHFL
Descriptor: Beta-2-microglobulin, GLYCEROL, HIV-based altered-peptide ligand KVAEIVHFL, ...
Authors:Collins, E.J, Lee, H.Y.
Deposit date:2011-12-16
Release date:2012-12-05
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Prediction of immunogenicity of altered-peptide ligands for HIV therapy
To be Published
7UM2
DownloadVisualize
BU of 7um2 by Molmil
SARS-CoV-2 Spike-derived peptide S417-425 K417T mutant (TIADYNYKL) presented by HLA-A*02:01
Descriptor: Beta-2-microglobulin, CADMIUM ION, HLA class I antigen, ...
Authors:Szeto, C, Gras, S.
Deposit date:2022-04-06
Release date:2023-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:SARS-CoV-2 Spike-derived peptide S417-425 K417T mutant (TIADYNYKL) presented by HLA-A*02:01
To Be Published
5W6C
DownloadVisualize
BU of 5w6c by Molmil
UCA Fab (unbound) from 6649 Lineage
Descriptor: UCA Fab heavy chain, UCA Fab light chain
Authors:Raymond, D.D, Harrison, S.C.
Deposit date:2017-06-16
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.634 Å)
Cite:Conserved epitope on influenza-virus hemagglutinin head defined by a vaccine-induced antibody.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8CMH
DownloadVisualize
BU of 8cmh by Molmil
Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S486-505
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-ETHANETHIOL, HLA class II histocompatibility antigen, ...
Authors:MacLachlan, B.J, Mason, G.H, Sourfield, D.O, Godkin, A.J, Rizkallah, P.J.
Deposit date:2023-02-19
Release date:2023-07-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4 + T cell immunity.
Cell Rep, 42, 2023
8CMG
DownloadVisualize
BU of 8cmg by Molmil
Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 nsp14 peptide (orf1ab)6420-6434
Descriptor: 1,2-ETHANEDIOL, HLA class II histocompatibility antigen, DR alpha chain, ...
Authors:MacLachlan, B.J, Mason, G.H, Sourfield, D.O, Godkin, A.J, Rizkallah, P.J.
Deposit date:2023-02-19
Release date:2023-07-26
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4 + T cell immunity.
Cell Rep, 42, 2023
5C0J
DownloadVisualize
BU of 5c0j by Molmil
HLA-A02 carrying RQFGPDWIVA
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, CALCIUM ION, ...
Authors:Rizkallah, P.J, Bulek, A.M, Cole, D.K, Sewell, A.K.
Deposit date:2015-06-12
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity.
J.Clin.Invest., 126, 2016
6QZC
DownloadVisualize
BU of 6qzc by Molmil
HLA-DR1 with the QAR Peptide
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Greenshields-Watson, A, Rizkallah, P.J.
Deposit date:2019-03-11
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:CD4+T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features.
Cell Rep, 32, 2020
3V4U
DownloadVisualize
BU of 3v4u by Molmil
Structure of a monoclonal antibody complexed with its MHC-I antigen
Descriptor: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN, 64-3-7 L CHAIN, ...
Authors:Margulies, D.H, Mage, M.G, Wang, R, Natarajan, K.
Deposit date:2011-12-15
Release date:2012-07-25
Last modified:2012-08-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:The Peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics.
J.Immunol., 189, 2012
3UO1
DownloadVisualize
BU of 3uo1 by Molmil
Structure of a monoclonal antibody complexed with its MHC-I antigen
Descriptor: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN, 64-3-7 L CHAIN, ...
Authors:Margulies, D.H, Mage, M.G, Wang, R, Natarajan, K.
Deposit date:2011-11-16
Release date:2012-07-25
Last modified:2012-08-01
Method:X-RAY DIFFRACTION (1.641 Å)
Cite:The Peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics.
J.Immunol., 189, 2012
5VWH
DownloadVisualize
BU of 5vwh by Molmil
HLA-B*58:01 presenting LSSPVTKSW
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-58 alpha chain, ...
Authors:Pymm, P, Rossjohn, J, Vivian, J.P.
Deposit date:2017-05-21
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.648 Å)
Cite:HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome.
Nat Commun, 9, 2018
2IPU
DownloadVisualize
BU of 2ipu by Molmil
PFA1 Fab fragment complexed with Abeta 1-8 peptide
Descriptor: ACETAMIDE, GLYCEROL, IgG2a Fab fragment Heavy Chain, ...
Authors:Gardberg, A.S, Dealwis, C.
Deposit date:2006-10-12
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular basis for passive immunotherapy of Alzheimer's disease
Proc.Natl.Acad.Sci.Usa, 104, 2007
4WJ5
DownloadVisualize
BU of 4wj5 by Molmil
Structure of HLA-A2 in complex with an altered peptide ligands based on Mart-1 variant epitope
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Celie, P.H.N, Rodenko, B, Ovaa, H.
Deposit date:2014-09-29
Release date:2014-10-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Altered Peptide Ligands Revisited: Vaccine Design through Chemically Modified HLA-A2-Restricted T Cell Epitopes.
J Immunol., 193, 2014
3PWL
DownloadVisualize
BU of 3pwl by Molmil
Human Class I MHC HLA-A2 in complex with the HuD peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Borbulevych, O.Y, Baker, B.M.
Deposit date:2010-12-08
Release date:2011-03-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Conformational Melding Permits a Conserved Binding Geometry in TCR Recognition of Foreign and Self Molecular Mimics.
J.Immunol., 186, 2011
6YTB
DownloadVisualize
BU of 6ytb by Molmil
GLYCOSYLATED KNOB/DUMMY-HOLE/DUMMY FC FRAGMENT
Descriptor: Immunoglobulin gamma-1 heavy chain, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kuglstatter, A, Leibrock, L, Benz, J.
Deposit date:2020-04-24
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Format chain exchange (FORCE) for high-throughput generation of bispecific antibodies in combinatorial binder-format matrices.
Nat Commun, 11, 2020
3VFU
DownloadVisualize
BU of 3vfu by Molmil
crystal structure of HLA B*3508 LPEP-P7Ala, peptide mutant P7-ala
Descriptor: Beta-2-microglobulin, LPEP peptide from EBV, P7A, ...
Authors:Liu, Y.C, Rossjohn, J, Gras, S.
Deposit date:2012-01-10
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The Energetic Basis Underpinning T-cell Receptor Recognition of a Super-bulged Peptide Bound to a Major Histocompatibility Complex Class I Molecule.
J.Biol.Chem., 287, 2012
1L6X
DownloadVisualize
BU of 1l6x by Molmil
FC FRAGMENT OF RITUXIMAB BOUND TO A MINIMIZED VERSION OF THE B-DOMAIN FROM PROTEIN A CALLED Z34C
Descriptor: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN CONSTANT REGION, Minimized B-domain of Protein A Z34C, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Idusogie, E.E, Presta, L.G, Santoro-Gazzano, H, Totpal, K, Wong, P.Y, Ultsch, M, Meng, Y.G, Mullkerrin, M.G.
Deposit date:2002-03-14
Release date:2002-04-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Mapping of the C1q binding site on rituxan, a chimeric antibody with a human IgG1 Fc.
J.Immunol., 164, 2000
2R23
DownloadVisualize
BU of 2r23 by Molmil
Crystal structure of S25-2 Fab in complex with Kdo analogues
Descriptor: D-glycero-alpha-D-talo-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid, Fab, antibody fragment (IgG1k), ...
Authors:Brooks, C.L, Evans, S.V.
Deposit date:2007-08-24
Release date:2008-12-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Exploration of specificity in germline monoclonal antibody recognition of a range of natural and synthetic epitopes.
J.Mol.Biol., 377, 2008
6P2S
DownloadVisualize
BU of 6p2s by Molmil
Structure of a nested set of N-terminally extended MHC I-peptides provide novel insights into antigen processing and presentation
Descriptor: Beta-2-microglobulin, MHC I-peptide, MHC class I antigen
Authors:Li, L, Batliwala, M, Bouvier, M.
Deposit date:2019-05-22
Release date:2019-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:ERAP1 enzyme-mediated trimming and structural analyses of MHC I-bound precursor peptides yield novel insights into antigen processing and presentation.
J.Biol.Chem., 294, 2019

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon