PDB: 1344 件ウェブページステータス検索Chemie searchBIRD

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4WSD	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2014-10-27 公開日 2015-06-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structural insights into the translational infidelity mechanism. Nat Commun, 6, 2015
7AFA	Bacterial 30S ribosomal subunit assembly complex state F (head domain) 分子名称: 16SrRNA (head domain of the 30S ribosome), 30S ribosomal protein S10, 30S ribosomal protein S13, ... 著者 Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Kaminishi, T, Diercks, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S. 登録日 2020-09-19 公開日 2021-07-07 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv, 7, 2021
6UO1	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Batool, Z, Dobosz-Bartoszek, M, Polikanov, Y.S. 登録日 2019-10-14 公開日 2019-11-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Pseudouridinylation of mRNA coding sequences alters translation. Proc.Natl.Acad.Sci.USA, 116, 2019
8CVO	Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S13, ... 著者 Lomakin, I.B, Devarkar, S.C, Bunick, C.G. 登録日 2022-05-18 公開日 2023-03-15 最終更新日 2023-04-19 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism. Nucleic Acids Res., 51, 2023
6SKF	Cryo-EM Structure of T. kodakarensis 70S ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Matzov, D, Sas-Chen, A, Thomas, J.M, Santangelo, T, Meier, J.L, Schwartz, S, Shalev-Benami, M. 登録日 2019-08-15 公開日 2020-07-29 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping. Nature, 583, 2020
5E81	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2015-10-13 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Nat Commun, 7, 2016
6GSJ	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Yusupov, M, Yusupova, G. 登録日 2018-06-14 公開日 2018-07-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria. Nucleic Acids Res., 46, 2018
6HRM	E. coli 70S d2d8 stapled ribosome 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Schmied, W.H, Tnimov, Z, Uttamapinant, C, Rae, C.D, Fried, S.D, Chin, J.W. 登録日 2018-09-27 公開日 2018-12-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 Controlling orthogonal ribosome subunit interactions enables evolution of new function. Nature, 564, 2018
7AF5	Bacterial 30S ribosomal subunit assembly complex state I (head domain) 分子名称: 16SrRNA (head domain of the 30S ribosome), 30S ribosomal protein S10, 30S ribosomal protein S13, ... 著者 Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S. 登録日 2020-09-19 公開日 2021-07-07 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv, 7, 2021
7NAX	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S. 登録日 2021-01-25 公開日 2021-12-08 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv, 7, 2021
5IBB	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2016-02-22 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
5J91	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-04-08 公開日 2016-07-06 最終更新日 2016-08-03 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
7MSC	Mtb 70SIC in complex with MtbEttA at Pre_R0 state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Cui, Z, Zhang, J. 登録日 2021-05-11 公開日 2022-02-02 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis. Nat Commun, 13, 2022
5MDV	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 James, N.R, Brown, A, Gordiyenko, Y, Ramakrishnan, V. 登録日 2016-11-13 公開日 2016-12-14 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Translational termination without a stop codon. Science, 354, 2016
8PPK	Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit 分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Schubert, K, Karousis, E.D, Ban, I, Lapointe, C.P, Leibundgut, M, Baeumlin, E, Kummerant, E, Scaiola, A, Schoenhut, T, Ziegelmueller, J, Puglisi, J.D, Muehlemann, O, Ban, N. 登録日 2023-07-07 公開日 2023-10-18 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Universal features of Nsp1-mediated translational shutdown by coronaviruses. Mol.Cell, 83, 2023
5IB7	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2016-02-22 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
8UU5	Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Seely, S.M, Basu, R.S, Gagnon, M.G. 登録日 2023-10-31 公開日 2024-02-28 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8CD1	70S-PHIKZ014 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Gerovac, M, Vogel, J. 登録日 2023-01-29 公開日 2024-01-24 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Phage proteins target and co-opt host ribosomes immediately upon infection. Nat Microbiol, 9, 2024
4V8B	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). 分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2011-12-06 公開日 2014-07-09 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A new understanding of the decoding principle on the ribosome. Nature, 484, 2012
5J7L	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-04-06 公開日 2016-07-27 最終更新日 2018-08-15 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
6WDE	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Korostelev, A.A. 登録日 2020-03-31 公開日 2020-07-01 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
4U52	Crystal structure of Nagilactone C bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-24 公開日 2014-10-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
6WD0	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Korostelev, A.A. 登録日 2020-03-31 公開日 2020-07-01 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
4U3M	Crystal structure of Anisomycin bound to the yeast 80S ribosome 分子名称: 18S rRNA, 25s rRNA, 40S ribosomal protein S0-A, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-22 公開日 2014-10-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
5WDT	70S ribosome-EF-Tu H84A complex with GppNHp 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fislage, M, Brown, Z, Frank, J. 登録日 2017-07-06 公開日 2018-04-25 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A. Nucleic Acids Res., 46, 2018

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