PDB: 108 件ウェブページステータス検索Chemie searchBIRD

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8B8H	Structure of DCS-resistant variant D322N of alanine racemase from M. tuberculosis in complex with DCS 分子名称: (~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene-[(4~{R})-3-oxidanylidene-1,2-oxazolidin-4-yl]azanium, 1,2-ETHANEDIOL, Alanine racemase, ... 著者 de Chiara, C, Prosser, G, Ogrodowicz, R.W, de Carvalho, L.P.S. 登録日 2022-10-04 公開日 2023-04-05 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Structure of the d-Cycloserine-Resistant Variant D322N of Alanine Racemase from Mycobacterium tuberculosis . Acs Bio Med Chem Au, 3, 2023
1XQL	Effect of a Y265F Mutant on the Transamination Based Cycloserine Inactivation of Alanine Racemase 分子名称: (5-HYDROXY-4-{[(3-HYDROXYISOXAZOL-4-YL)AMINO]METHYL}-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, (R)-4-AMINO-ISOXAZOLIDIN-3-ONE, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, ... 著者 Fenn, T.D, Holyoak, T, Stamper, G.F, Ringe, D. 登録日 2004-10-12 公開日 2005-01-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Effect of a Y265F Mutant on the Transamination-Based Cycloserine Inactivation of Alanine Racemase Biochemistry, 44, 2005
4PB4	D-threo-3-hydroxyaspartate dehydratase H351A mutant complexed with 2-amino maleic acid 分子名称: 2-amino maleic acid, D-threo-3-hydroxyaspartate dehydratase, MAGNESIUM ION, ... 著者 Yasutake, Y, Matsumoto, Y, Wada, M. 登録日 2014-04-11 公開日 2015-03-11 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural insights into the substrate stereospecificity of D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23: a useful enzyme for the synthesis of optically pure L-threo- and D-erythro-3-hydroxyaspartate. Appl.Microbiol.Biotechnol., 99, 2015
5YYC	Crystal structure of alanine racemase from Bacillus pseudofirmus (OF4) 分子名称: Alanine racemase, PYRIDOXAL-5'-PHOSPHATE 著者 Dong, H, Hu, T.T, He, G.Z, Lu, D.R, Qi, J.X, Dou, Y.S, Long, W, He, X, Su, D, Ju, J.S. 登録日 2017-12-08 公開日 2019-01-02 実験手法 X-RAY DIFFRACTION (1.801 Å) 主引用文献 Structural features and kinetic characterization of alanine racemase from Bacillus pseudofirmus OF4. Biochem. Biophys. Res. Commun., 497, 2018
7YQA	Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii 分子名称: D-threonine aldolase, MAGNESIUM ION 著者 Hirato, Y, Goto, M, Mizobuchi, T, Muramatsu, H, Tanigawa, M, Nishimura, K. 登録日 2022-08-05 公開日 2023-02-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii. Acta Crystallogr.,Sect.F, 79, 2023
1VFS	Crystal structure of D-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae 分子名称: CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, alanine racemase 著者 Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M. 登録日 2004-04-19 公開日 2004-09-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product. J.Biol.Chem., 279, 2004
6G58	Structure of the alanine racemase from Staphylococcus aureus in complex with a pyridoxal 5' phosphate-derivative 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, (6-but-3-ynyl-4-methyl-5-oxidanyl-pyridin-3-yl)methyl dihydrogen phosphate, ... 著者 Hoegl, A, Sieber, S.A, Schneider, S. 登録日 2018-03-29 公開日 2018-05-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Mining the cellular inventory of pyridoxal phosphate-dependent enzymes with functionalized cofactor mimics. Nat Chem, 10, 2018
5NLC	Structure of PipY, the COG0325 family member of Synechococcus elongatus PCC7942,without PLP 分子名称: PHOSPHATE ION, PipY 著者 Tremino, L, Forcada-Nadal, A, Contreras, A, Rubio, V. 登録日 2017-04-04 公開日 2017-09-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Studies on cyanobacterial protein PipY shed light on structure, potential functions, and vitamin B6 -dependent epilepsy. FEBS Lett., 591, 2017
4WR3	Y274F alanine racemase from E. coli 分子名称: Alanine racemase, biosynthetic, GLYCEROL, ... 著者 Squire, C.J, Yosaatmadja, Y, Patrick, W.M. 登録日 2014-10-23 公開日 2015-11-04 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Mechanistic and Evolutionary Insights from the Reciprocal Promiscuity of Two Pyridoxal Phosphate-dependent Enzymes. J.Biol.Chem., 291, 2016
1XFC	The 1.9 A crystal structure of alanine racemase from Mycobacterium tuberculosis contains a conserved entryway into the active site 分子名称: Alanine racemase, PYRIDOXAL-5'-PHOSPHATE 著者 LeMagueres, P, Im, H, Ebalunode, J, Strych, U, Benedik, M.J, Briggs, J.M, Kohn, H, Krause, K.L. 登録日 2004-09-14 公開日 2005-08-16 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The 1.9 A crystal structure of alanine racemase from Mycobacterium tuberculosis contains a conserved entryway into the active site. Biochemistry, 44, 2005
4PB5	D-threo-3-hydroxyaspartate dehydratase H351A mutant complexed with L-erythro-3-hydroxyaspartate 分子名称: (3R)-3-hydroxy-L-aspartic acid, D-threo-3-hydroxyaspartate dehydratase, GLYCEROL, ... 著者 Yasutake, Y, Matsumoto, Y, Wada, M. 登録日 2014-04-11 公開日 2015-03-11 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural insights into the substrate stereospecificity of D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23: a useful enzyme for the synthesis of optically pure L-threo- and D-erythro-3-hydroxyaspartate. Appl.Microbiol.Biotechnol., 99, 2015
3R79	Crystal structure of an uncharactertized protein from Agrobacterium tumefaciens 分子名称: ACETATE ION, PRASEODYMIUM ION, PYRIDOXAL-5'-PHOSPHATE, ... 著者 Eswaramoorthy, S, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC) 登録日 2011-03-22 公開日 2011-04-06 最終更新日 2012-02-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of an uncharactertized protein from Agrobacterium tumefaciens To be Published
2SFP	ALANINE RACEMASE WITH BOUND PROPIONATE INHIBITOR 分子名称: PROPANOIC ACID, PROTEIN (ALANINE RACEMASE), PYRIDOXAL-5'-PHOSPHATE 著者 Morollo, A.A, Petsko, G.A, Ringe, D. 登録日 1999-02-16 公開日 1999-02-24 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of a Michaelis complex analogue: propionate binds in the substrate carboxylate site of alanine racemase. Biochemistry, 38, 1999
1SFT	ALANINE RACEMASE 分子名称: ACETATE ION, ALANINE RACEMASE, PYRIDOXAL-5'-PHOSPHATE 著者 Shaw, J.P, Petsko, G.A, Ringe, D. 登録日 1996-09-20 公開日 1997-02-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Determination of the structure of alanine racemase from Bacillus stearothermophilus at 1.9-A resolution. Biochemistry, 36, 1997
4QHR	The structure of alanine racemase from Acinetobacter baumannii 分子名称: Alanine racemase 著者 Davis, E, Scaletti-Hutchinson, E, Nakatani, Y, Krause, K.L. 登録日 2014-05-29 公開日 2015-05-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The structure of alanine racemase from Acinetobacter baumannii ACTA CRYSTALLOGR.,SECT.F, 70, 2014
3ANU	Crystal structure of D-serine dehydratase from chicken kidney 分子名称: CHLORIDE ION, D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE, ... 著者 Tanaka, H, Senda, M, Venugopalan, N, Yamamoto, A, Senda, T, Ishida, T, Horiike, K. 登録日 2010-09-09 公開日 2011-06-15 最終更新日 2013-08-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney J.Biol.Chem., 286, 2011
6Q71	Crystal structure of the alanine racemase Bsu17640 from Bacillus subtilis in the presence of Bis-Tris propane 分子名称: Alanine racemase 2, CHLORIDE ION, MAGNESIUM ION, ... 著者 Bernardo-Garcia, N, Gago, F, Hermoso, J.A. 登録日 2018-12-12 公開日 2019-04-24 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Cold-induced aldimine bond cleavage by Tris in Bacillus subtilis alanine racemase. Org.Biomol.Chem., 17, 2019
5NM8	Structure of PipY, the COG0325 family member of Synechococcus elongatus PCC7942, with PLP bound 分子名称: CALCIUM ION, PYRIDOXAL-5'-PHOSPHATE, PipY 著者 Tremino, L, Forcada-Nadal, A, Contreras, A, Rubio, V. 登録日 2017-04-05 公開日 2017-09-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Studies on cyanobacterial protein PipY shed light on structure, potential functions, and vitamin B6 -dependent epilepsy. FEBS Lett., 591, 2017
1XQK	Effect of a Y265F Mutant on the Transamination Based Cycloserine Inactivation of Alanine Racemase 分子名称: (5-HYDROXY-4-{[(3-HYDROXYISOXAZOL-4-YL)AMINO]METHYL}-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Alanine racemase 著者 Fenn, T.D, Holyoak, T, Stamper, G.F, Ringe, D. 登録日 2004-10-12 公開日 2005-01-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Effect of a Y265F Mutant on the Transamination-Based Cycloserine Inactivation of Alanine Racemase Biochemistry, 44, 2005
3HA1	Alanine racemase from Bacillus Anthracis (Ames) 分子名称: ACETATE ION, Alanine racemase, CHLORIDE ION 著者 Counago, R.M, Davlieva, M, Strych, U, Hill, R.E, Krause, K.L. 登録日 2009-04-30 公開日 2009-09-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Biochemical and structural characterization of alanine racemase from Bacillus anthracis (Ames). Bmc Struct.Biol., 9, 2009
1VFH	Crystal structure of alanine racemase from D-cycloserine producing Streptomyces lavendulae 分子名称: PYRIDOXAL-5'-PHOSPHATE, alanine racemase 著者 Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M. 登録日 2004-04-13 公開日 2004-09-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product. J.Biol.Chem., 279, 2004
1W8G	CRYSTAL STRUCTURE OF E. COLI K-12 YGGS 分子名称: HYPOTHETICAL UPF0001 PROTEIN YGGS, ISOCITRIC ACID, PYRIDOXAL-5'-PHOSPHATE 著者 Sulzenbacher, G, Gruez, A, Spinelli, S, Roig-Zamboni, V, Pagot, F, Bignon, C, Vincentelli, R, Cambillau, C. 登録日 2004-09-21 公開日 2006-07-05 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal Structure of E. Coli K-12 Yggs To be Published
1L6G	Alanine racemase bound with N-(5'-phosphopyridoxyl)-D-alanine 分子名称: N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE, alanine racemase 著者 Watanabe, A, Yoshimura, T, Mikami, B, Hayashi, H, Kagamiyama, H, Esaki, N. 登録日 2002-03-10 公開日 2002-06-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine. J.Biol.Chem., 277, 2002
1L6F	Alanine racemase bound with N-(5'-phosphopyridoxyl)-L-alanine 分子名称: ALANYL-PYRIDOXAL-5'-PHOSPHATE, alanine racemase 著者 Watanabe, A, Yoshimura, T, Mikami, B, Hayashi, H, Kagamiyama, H, Esaki, N. 登録日 2002-03-09 公開日 2002-06-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine. J.Biol.Chem., 277, 2002
7U9H	Crystal Structure of Escherichia coli apo Pyridoxal 5'-phosphate homeostasis protein (YGGS) 分子名称: Pyridoxal phosphate homeostasis protein, SULFATE ION 著者 Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K. 登録日 2022-03-10 公開日 2022-03-23 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability. Protein Sci., 31, 2022

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