PDB: 245 resultsInfo pagesStatus searchChemie searchBIRD

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1WE9	Solution structure of PHD domain in nucleic acid binding protein-like NP_197993 Descriptor: PHD finger family protein, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-24 Release date: 2004-11-24 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in nucleic acid binding protein-like NP_197993 To be Published
1WEV	Solution structure of PHD domain in protein NP_082203 Descriptor: RIKEN cDNA 1110020M19, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-25 Release date: 2004-11-25 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in protein NP_082203 To be Published
6LSB	Crystal Structure of DPF domain of MOZ in complex with H3K14bz peptide Descriptor: Histone H3, Histone acetyltransferase KAT6A, ZINC ION Authors: Li, H.T, Ren, X.L. Deposit date: 2020-01-17 Release date: 2020-11-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Histone benzoylation serves as an epigenetic mark for DPF and YEATS family proteins. Nucleic Acids Res., 49, 2021
1WEE	Solution structure of PHD domain in PHD finger family protein Descriptor: PHD finger family protein, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-24 Release date: 2004-11-24 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in PHD finger family protein To be Published
6IIW	Crystal structure of human UHRF1 PHD finger in complex with PAF15 Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, E3 ubiquitin-protein ligase UHRF1, PCNA-associated factor, ... Authors: Arita, K, Kori, S. Deposit date: 2018-10-07 Release date: 2019-10-09 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.699 Å) Cite: Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nat Commun, 11, 2020
1XWH	NMR structure of the first phd finger of autoimmune regulator protein (AIRE1): insights into apeced Descriptor: Autoimmune regulator, ZINC ION Authors: Bottomley, M.J, Stier, G, Krasotkina, J, Legube, G, Simon, B, Akhtar, A, Sattler, M, Musco, G. Deposit date: 2004-11-01 Release date: 2005-01-25 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease J.Biol.Chem., 280, 2005
6J2P	Crystal structure of Saccharomyces cerevisiae Spp1 in complex with H3K4me3 Descriptor: COMPASS component SPP1, Histone H3, ZINC ION Authors: He, C, Li, F. Deposit date: 2019-01-02 Release date: 2019-09-11 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural basis for histone H3K4me3 recognition by the N-terminal domain of the PHD finger protein Spp1. Biochem.J., 476, 2019
6FAP	Crystal structure of human BAZ2A PHD zinc finger in complex with Fr23 Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, PHOSPHATE ION, ... Authors: Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A. Deposit date: 2017-12-16 Release date: 2018-03-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ACS Chem. Biol., 13, 2018
6FKP	Crystal structure of BAZ2A PHD zinc finger in complex with H3 10-mer AA mutant peptide Descriptor: ALA-ARG-THR-ALA-ALA-THR-ALA-ARG, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ... Authors: Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A. Deposit date: 2018-01-24 Release date: 2018-03-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2 Å) Cite: Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ACS Chem. Biol., 13, 2018
6FI0	Crystal structure of BAZ2A PHD zinc finger in complex with Fr 19 Descriptor: 2-azanyl-1-(6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-yl)ethanone, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ... Authors: Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A. Deposit date: 2018-01-16 Release date: 2018-03-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ACS Chem. Biol., 13, 2018
6FHQ	Crystal structure of human BAZ2B PHD zinc finger in complex with Fr 21 Descriptor: 2-azanyl-~{N}-(1,3-thiazol-2-yl)ethanamide, Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION Authors: Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A. Deposit date: 2018-01-15 Release date: 2018-03-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ACS Chem. Biol., 13, 2018
6FHU	Crystal structure of BAZ2A PHD zinc finger in complex with H3 3-mer peptide Descriptor: ALA-ARG-TAM, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ... Authors: Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A. Deposit date: 2018-01-15 Release date: 2018-03-21 Last modified: 2018-05-02 Method: X-RAY DIFFRACTION (2 Å) Cite: Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ACS Chem. Biol., 13, 2018
6FI1	Crystal structure of human BAZ2B PHD zinc finger in complex with Fr23 Descriptor: Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION, ~{N}-(4-aminophenyl)-2-azanyl-ethanamide Authors: Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A. Deposit date: 2018-01-16 Release date: 2018-03-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ACS Chem. Biol., 13, 2018
6OIE	The double PHD finger (DPF) of MORF in complex with histone H3K14cr Descriptor: Histone H3.1t peptide, Histone acetyltransferase KAT6B, ZINC ION Authors: Klein, B.J, Kutateladze, T.G. Deposit date: 2019-04-09 Release date: 2019-11-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.075 Å) Cite: Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation. Nat Commun, 10, 2019
2XB1	Crystal structure of the human Pygo2 PHD finger in complex with the B9L HD1 domain Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, PYGOPUS HOMOLOG 2, ... Authors: Miller, T.C, Rutherford, T.J, Johnson, C.M, Fiedler, M, Bienz, M. Deposit date: 2010-04-01 Release date: 2010-07-28 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Allosteric Remodeling of the Histone H3 Binding Pocket in the Pygo2 Phd Finger Triggered by its Binding to the B9L/Bcl9 Co-Factor. J.Mol.Biol., 401, 2010
2YQL	Solution structure of the PHD domain in PHD finger protein 21A Descriptor: PHD finger protein 21A, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-30 Release date: 2008-03-18 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in PHD finger protein 21A To be Published
2YYR	Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide Descriptor: H3K4Me3 peptide, Pygopus homolog 1, ZINC ION Authors: Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-01 Release date: 2008-05-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide To be Published
2YSM	Solution structure of the second and third PHD domain from Histone-lysine N-methyltransferase 2C (KMT2C/MLL3) Descriptor: Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog, ZINC ION Authors: Qin, X.R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-03 Release date: 2007-10-09 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure of the first and second PHD domain from Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog To be Published
2YT5	Solution structure of the PHD domain of Metal-response element-binding transcription factor 2 Descriptor: Metal-response element-binding transcription factor 2, ZINC ION Authors: Masuda, K, Muto, Y, Isono, K, Watanabe, S, Harada, T, Kigawa, T, Koseki, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-05 Release date: 2008-04-15 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Solution structure of the PHD domain of Metal-response element-binding transcription factor 2 To be Published
3ASL	Structure of UHRF1 in complex with histone tail Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ... Authors: Arita, K, Sugita, K, Unoki, M, Hamamoto, R, Sekiyama, N, Tochio, H, Ariyoshi, M, Shirakawa, M. Deposit date: 2010-12-16 Release date: 2012-01-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.41 Å) Cite: Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1 Proc.Natl.Acad.Sci.USA, 109, 2012
2DX8	Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus Descriptor: Pygopus homolog 1, ZINC ION Authors: Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-24 Release date: 2007-05-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus To be Published
2E6S	Solution structure of the PHD domain in RING finger protein 107 Descriptor: E3 ubiquitin-protein ligase UHRF2, ZINC ION Authors: Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-28 Release date: 2007-07-03 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in RING finger protein 107 To be Published
2E6R	Solution structure of the PHD domain in SmcY protein Descriptor: Jumonji/ARID domain-containing protein 1D, ZINC ION Authors: Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-28 Release date: 2007-07-03 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in SmcY protein To be Published
2FUI	NMR solution structure of PHD finger fragment of human BPTF in free state Descriptor: bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-26 Release date: 2006-07-11 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2FUU	NMR solution structure of the PHD domain from the human BPTF in complex with H3(1-15)K4me3 peptide Descriptor: Histone H3, ZINC ION, bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-27 Release date: 2006-07-11 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006

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