PDB: 457 resultsInfo pagesStatus searchChemie searchBIRD

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5IYD	Human core-PIC in the initial transcribing state (no IIS) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ... Authors: He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E. Deposit date: 2016-03-24 Release date: 2016-05-18 Last modified: 2019-11-20 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Near-atomic resolution visualization of human transcription promoter opening. Nature, 533, 2016
5IYB	Human core-PIC in the open state Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ... Authors: He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E. Deposit date: 2016-03-24 Release date: 2016-05-18 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Near-atomic resolution visualization of human transcription promoter opening. Nature, 533, 2016
5IY7	Human holo-PIC in the open state Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ... Authors: He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E. Deposit date: 2016-03-24 Release date: 2016-05-18 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (8.6 Å) Cite: Near-atomic resolution visualization of human transcription promoter opening. Nature, 533, 2016
5FYW	Transcription initiation complex structures elucidate DNA opening (OC) Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. Deposit date: 2016-03-10 Release date: 2016-05-18 Last modified: 2018-10-03 Method: ELECTRON MICROSCOPY (4.35 Å) Cite: Transcription Initiation Complex Structures Elucidate DNA Opening Nature, 533, 2016
5FZ5	Transcription initiation complex structures elucidate DNA opening (CC) Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. Deposit date: 2016-03-10 Release date: 2016-05-18 Last modified: 2019-01-23 Method: ELECTRON MICROSCOPY (8.8 Å) Cite: Transcription Initiation Complex Structures Elucidate DNA Opening Nature, 533, 2016
5IP7	Structure of RNA Polymerase II-Tfg1 peptide complex Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. Deposit date: 2016-03-09 Release date: 2016-05-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.52 Å) Cite: Transcription initiation complex structures elucidate DNA opening. Nature, 533, 2016
5IP9	Structure of RNA Polymerase II-TFIIF complex Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. Deposit date: 2016-03-09 Release date: 2016-05-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Transcription initiation complex structures elucidate DNA opening. Nature, 533, 2016
5IE8	The pyrazinoic acid binding domain of Ribosomal Protein S1 from Mycobacterium tuberculosis Descriptor: 30S ribosomal protein S1 Authors: Huang, B, Liao, X. Deposit date: 2016-02-25 Release date: 2016-03-16 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: (1)H, (15)N, (13)C resonance assignments for pyrazinoic acid binding domain of ribosomal protein S1 from Mycobacterium tuberculosis Biomol NMR Assign, 10, 2016
5F6C	The structure of E. coli RNase E catalytically inactive mutant with RNA bound Descriptor: MAGNESIUM ION, RNA (5'-R(P*GP*U)-3'), RNA (5'-R(P*GP*UP*G)-3'), ... Authors: Bandyra, K.J, Luisi, B.F. Deposit date: 2015-12-05 Release date: 2016-12-14 Last modified: 2019-02-27 Method: X-RAY DIFFRACTION (3.002 Å) Cite: Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E. Mol. Cell, 72, 2018
5FMF	the P-lobe of RNA polymerase II pre-initiation complex Descriptor: DNA REPAIR HELICASE RAD25, SSL2, DNA REPAIR HELICASE RAD3, ... Authors: Murakami, K, Tsai, K, Kalisman, N, Bushnell, D.A, Asturias, F.J, Kornberg, R.D. Deposit date: 2015-11-03 Release date: 2015-11-25 Last modified: 2017-07-12 Method: ELECTRON MICROSCOPY (6 Å) Cite: Structure of an RNA Polymerase II Pre-Initiation Complex Proc.Natl.Acad.Sci.USA, 112, 2015
5FLM	Structure of transcribing mammalian RNA polymerase II Descriptor: DNA, DNA-RNA ELONGATION SCAFFOLD, DNA-DIRECTED RNA POLYMERASE, ... Authors: Bernecky, C, Herzog, F, Baumeister, W, Plitzko, J.M, Cramer, P. Deposit date: 2015-10-26 Release date: 2016-01-20 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of Transcribing Mammalian RNA Polymerase II Nature, 529, 2016
5C9S	Crystal Structure of the C-terminal domain of Rrp5 Descriptor: GLYCEROL, rRNA biogenesis protein RRP5 Authors: Khoshnevis, S, Karbstein, K. Deposit date: 2015-06-28 Release date: 2016-05-18 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure of the C-terminal domain of Rrp5 Plos Biol., 2016
3JAP	Structure of a partial yeast 48S preinitiation complex in closed conformation Descriptor: 18S rRNA, MAGNESIUM ION, METHIONINE, ... Authors: Llacer, J.L, Hussain, T, Ramakrishnan, V. Deposit date: 2015-06-18 Release date: 2015-08-12 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (4.9 Å) Cite: Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex. Mol.Cell, 59, 2015
5C4X	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-18 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (4 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
5C3E	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-17 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
5C44	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-17 Release date: 2015-08-26 Method: X-RAY DIFFRACTION (3.95 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
5C4A	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Saphr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-17 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (4.2 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
4V1N	Architecture of the RNA polymerase II-Mediator core transcription initiation complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P. Deposit date: 2014-09-29 Release date: 2015-02-04 Last modified: 2019-04-10 Method: ELECTRON MICROSCOPY (7.8 Å) Cite: Architecture of the RNA Polymerase II-Mediator Core Initiation Complex. Nature, 518, 2015
4V1O	Architecture of the RNA polymerase II-Mediator core transcription initiation complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P. Deposit date: 2014-09-29 Release date: 2015-02-04 Last modified: 2017-08-30 Method: ELECTRON MICROSCOPY (9.7 Å) Cite: Architecture of the RNA Polymerase II-Mediator Core Initiation Complex. Nature, 518, 2015
3J81	CryoEM structure of a partial yeast 48S preinitiation complex Descriptor: 18S rRNA, MAGNESIUM ION, METHIONINE, ... Authors: Hussain, T, Llacer, J.L, Fernandez, I.S, Savva, C.G, Ramakrishnan, V. Deposit date: 2014-08-29 Release date: 2014-11-05 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural changes enable start codon recognition by the eukaryotic translation initiation complex. Cell(Cambridge,Mass.), 159, 2014
4R71	Structure of the Qbeta holoenzyme complex in the P1211 crystal form Descriptor: 30S ribosomal protein S1, Elongation factor Ts, Elongation factor Tu, ... Authors: Gytz, H, Seweryn, P, Kutlubaeva, Z, Chetverin, A.B, Brodersen, D.E, Knudsen, C.R. Deposit date: 2014-08-26 Release date: 2015-09-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.21 Å) Cite: Structural basis for RNA-genome recognition during bacteriophage Q beta replication. Nucleic Acids Res., 43, 2015
4QJF	X-ray crystal structure of Thermocuccus kodakarensis RNA polymerase Rpp4/Rpo7 (RpoF/RpoE) complex Descriptor: DNA-directed RNA polymerase, subunit E', subunit F Authors: Murakami, K.S. Deposit date: 2014-06-03 Release date: 2014-10-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.312 Å) Cite: Crystal structure of euryarchaeal RNA polymerase and insight into the evolution of RNA polymerase II structure Nat.Commun., 2014
4QIW	Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... Authors: Jun, S.-H, Murakami, K.S. Deposit date: 2014-06-02 Release date: 2014-10-08 Last modified: 2014-11-26 Method: X-RAY DIFFRACTION (3.5 Å) Cite: The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration. Nat Commun, 5, 2014
4Q7J	Complex structure of viral RNA polymerase Descriptor: 30S ribosomal protein S1, Elongation factor Ts, Elongation factor Tu 1, ... Authors: Takeshita, D. Deposit date: 2014-04-25 Release date: 2014-08-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular insights into replication initiation by Q beta replicase using ribosomal protein S1. Nucleic Acids Res., 42, 2014
4NNI	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1, PYRAZINE-2-CARBOXYLIC ACID Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015

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