PDB: 2004 resultsInfo pagesStatus searchChemie searchBIRD

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7YV3	genetically encoded pH sensor Lime at pH10 Descriptor: Lime Authors: Wen, Y, Shen, Y, Campbell, R, Lemieux, M.J. Deposit date: 2022-08-18 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin. ACS Sens, 8, 2023
7YV5	genetically encoded pH sensor Lime at pH6 Descriptor: Lime Authors: Wen, Y, Shen, Y, Campbell, R, Lemieux, M.J. Deposit date: 2022-08-18 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin. ACS Sens, 8, 2023
8IMX	Cryo-EM structure of GPI-T with a chimeric GPI-anchored protein Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Xu, Y, Li, T, Qu, Q, Li, D. Deposit date: 2023-03-07 Release date: 2023-08-16 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Structures of liganded glycosylphosphatidylinositol transamidase illuminate GPI-AP biogenesis. Nat Commun, 14, 2023
8IMY	Cryo-EM structure of GPI-T (inactive mutant) with GPI and proULBP2, a proprotein substrate Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Li, T, Xu, Y, Qu, Q, Li, D. Deposit date: 2023-03-07 Release date: 2023-08-16 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: Structures of liganded glycosylphosphatidylinositol transamidase illuminate GPI-AP biogenesis. Nat Commun, 14, 2023
8G4E	Green Fluorescence Protein imaged on a cryo-EM imaging scaffold Descriptor: RCG-10 - Cryo-EM imaging scaffold subunit B fused to DARPin, Superfolder Green Fluorescent Protein Authors: Castells-Graells, R, Sawaya, M.R, Yeates, T.O. Deposit date: 2023-02-09 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Cryo-EM structure determination of small therapeutic protein targets at 3 angstrom -resolution using a rigid imaging scaffold. Proc.Natl.Acad.Sci.USA, 120, 2023
8OOC	CryoEM Structure INO80core Hexasome complex Rvb core refinement state1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Chromatin-remodeling ATPase Ino80, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-05 Release date: 2023-08-02 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8AM4	Cl-rsEGFP2 Long Wavelength Structure Descriptor: Green fluorescent protein Authors: Orr, C.M, Fadini, A, van Thor, J. Deposit date: 2022-08-02 Release date: 2023-08-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 2023
8B6T	X-ray structure of the interface optimized haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG5-TMR) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate Descriptor: CHLORIDE ION, Green fluorescent protein,Haloalkane dehalogenase, [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium Authors: Tarnawski, M, Hellweg, L, Hiblot, J. Deposit date: 2022-09-27 Release date: 2023-07-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: A general method for the development of multicolor biosensors with large dynamic ranges. Nat.Chem.Biol., 19, 2023
8B6S	X-ray structure of the haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG1) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein,Haloalkane dehalogenase, ... Authors: Tarnawski, M, Hellweg, L, Hiblot, J. Deposit date: 2022-09-27 Release date: 2023-07-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: A general method for the development of multicolor biosensors with large dynamic ranges. Nat.Chem.Biol., 19, 2023
8P2K	Ternary complex of translating ribosome, NAC and METAP1 Descriptor: 18s rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Jia, M, Jaskolowski, M, Scaiola, A, Jomaa, A, Ban, N. Deposit date: 2023-05-16 Release date: 2023-07-19 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: NAC controls cotranslational N-terminal methionine excision in eukaryotes. Science, 380, 2023
8A6O	Room temperature rsEGFP2 with a chlorinated chromophore 600 fs after Photoexcitation Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-18 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8A6S	Room temperature rsEGFP2 with a chlorinated chromophore 1 microsecond after Photoexcitation Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-19 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8A6N	Room temperature rsEGFP2 with a chlorinated chromophore 300 fs after Photoexcitation Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-18 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8A83	rsEGFP2 with a chlorinated chromophore in the fluorescent ON-state in a crystal dehydrated after illumination Descriptor: Green fluorescent protein, SULFATE ION Authors: Fadini, A, van Thor, J, Chang, J. Deposit date: 2022-06-21 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8AHB	rsEGFP2 photoswitched to its off-state at room temperature and back-switched to its on-state at 100K Descriptor: Green fluorescent protein, SULFATE ION Authors: Mantovanelli, A, Adam, V. Deposit date: 2022-07-21 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Photophysical Studies at Cryogenic Temperature Reveal a Novel Photoswitching Mechanism of rsEGFP2. J.Am.Chem.Soc., 145, 2023
8A6G	Room temperature rsEGFP2 with a chlorinated chromophore in the non-fluorescent OFF-state Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-17 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8A6P	Room temperature rsEGFP2 with a chlorinated chromophore 900 fs after photoexcitation Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-18 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8A6R	Room temperature rsEGFP2 with a chlorinated chromophore 100 ps after Photoexcitation Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-18 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8A6Q	Room temperature rsEGFP2 with a chlorinated chromophore 5 ps after photoexcitation Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-18 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8A7V	Room temperature rsEGFP2 in its OFF-state obtained with SFX Descriptor: Green fluorescent protein Authors: Fadini, A, van Thor, J. Deposit date: 2022-06-21 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism. J.Am.Chem.Soc., 145, 2023
8AHA	rsEGFP2 photoswitched to its off-state at 100K Descriptor: Green fluorescent protein, SULFATE ION Authors: Mantovanelli, A, Adam, V. Deposit date: 2022-07-21 Release date: 2023-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Photophysical Studies at Cryogenic Temperature Reveal a Novel Photoswitching Mechanism of rsEGFP2. J.Am.Chem.Soc., 145, 2023
7Y77	Crystal structure of rice NAL1 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Protein NARROW LEAF 1 Authors: Yan, J.J, Guan, Z.Y, Yin, P, Xiong, L.Z. Deposit date: 2022-06-21 Release date: 2023-07-12 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Serine protease NAL1 exerts pleiotropic functions through degradation of TOPLESS-related corepressor in rice. Nat.Plants, 9, 2023
8T1D	Open-state cryo-EM structure of full-length human TRPV4 in complex with agonist 4a-PDD Descriptor: (1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate, Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera Authors: Talyzina, I.A, Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-06-02 Release date: 2023-07-05 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structure of human TRPV4 in complex with GTPase RhoA. Nat Commun, 14, 2023
8T1B	Cryo-EM structure of full-length human TRPV4 in apo state Descriptor: (2R)-2-{[(4-O-hexopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-4-{[(25R)-5beta,14beta,17beta-spirostan-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, SODIUM ION, Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera, ... Authors: Nadezhdin, K.D, Talyzina, I.A, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-06-02 Release date: 2023-07-05 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of human TRPV4 in complex with GTPase RhoA. Nat Commun, 14, 2023
8T1F	Cryo-EM structure of full-length human TRPV4 in complex with antagonist HC-067047 Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-methyl-1-[3-(morpholin-4-yl)propyl]-5-phenyl-N-[3-(trifluoromethyl)phenyl]-1H-pyrrole-3-carboxamide, Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera Authors: Talyzina, I.A, Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-06-02 Release date: 2023-07-05 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Structure of human TRPV4 in complex with GTPase RhoA. Nat Commun, 14, 2023

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