PDB: 73332 resultsInfo pagesStatus searchChemie searchBIRD

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4V92	Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES Descriptor: 18S RRNA, ES1, ES10, ... Authors: Fernandez, I.S, Bai, X, Scheres, S.H.W, Ramakrishnan, V. Deposit date: 2014-03-21 Release date: 2014-07-09 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome. Cell(Cambridge,Mass.), 157, 2014
4W5Q	The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2014-08-18 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.101 Å) Cite: Gene regulation. Structural basis for microRNA targeting. Science, 346, 2014
4W5R	The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target) Descriptor: ISOPROPYL ALCOHOL, MAGNESIUM ION, PHENOL, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2014-08-18 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Gene regulation. Structural basis for microRNA targeting. Science, 346, 2014
8I2J	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1-(4-methoxyphenyl)ethanone, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.65 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I27	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 4-methoxybenzenecarbonitrile, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2A	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 5-METHOXYBENZIMIDAZOLE, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.35 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2M	The crystal structure of homodimeric E. coli tryptophanyl-tRNA synthetase bound with niraparib at one of its two active sites Descriptor: 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2C	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 4-methoxyaniline, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.07 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I1Z	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment Descriptor: 1-(2,3-dihydro-1-benzofuran-5-yl)ethanone, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-13 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2L	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, CHLORZOXAZONE, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
4V2S	Crystal structure of Hfq in complex with the sRNA RydC Descriptor: RNA-BINDING PROTEIN HFQ, RYDC Authors: Dimastrogiovanni, D, Frohlich, K.S, Bruce, H.A, Bandyra, K.J, Hohensee, S, Vogel, J, Luisi, B.F. Deposit date: 2014-10-14 Release date: 2015-01-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.48 Å) Cite: Recognition of the small regulatory RNA RydC by the bacterial Hfq protein. Elife, 3, 2014
4W5T	The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7 Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2014-08-18 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Gene regulation. Structural basis for microRNA targeting. Science, 346, 2014
4W5O	The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 Descriptor: ISOPROPYL ALCOHOL, MAGNESIUM ION, PHENOL, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2014-08-18 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.802 Å) Cite: Gene regulation. Structural basis for microRNA targeting. Science, 346, 2014
4W5N	The Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNA Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ... Authors: Schirle, N.T, Sheu-Gruttadauria, J, MacRae, I.J. Deposit date: 2014-08-18 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Gene regulation. Structural basis for microRNA targeting. Science, 346, 2014
5FLM	Structure of transcribing mammalian RNA polymerase II Descriptor: DNA, DNA-RNA ELONGATION SCAFFOLD, DNA-DIRECTED RNA POLYMERASE, ... Authors: Bernecky, C, Herzog, F, Baumeister, W, Plitzko, J.M, Cramer, P. Deposit date: 2015-10-26 Release date: 2016-01-20 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of Transcribing Mammalian RNA Polymerase II Nature, 529, 2016
6YSS	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V. Deposit date: 2020-04-23 Release date: 2020-08-19 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nat Commun, 11, 2020
7ZNK	Structure of an endogenous human TREX complex bound to mRNA Descriptor: RNA, Spliceosome RNA helicase DDX39B, THO complex subunit 1, ... Authors: Pacheco-Fiallos, F.B, Vorlaender, M.K, Plaschka, C. Deposit date: 2022-04-21 Release date: 2023-05-03 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: mRNA recognition and packaging by the human transcription-export complex. Nature, 616, 2023
4WJ3	Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa Descriptor: 76mer-tRNA, Aspartate--tRNA(Asp/Asn) ligase, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, ... Authors: Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. Deposit date: 2014-09-29 Release date: 2014-12-31 Last modified: 2020-02-05 Method: X-RAY DIFFRACTION (3.705 Å) Cite: Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015
4XWW	Crystal structure of RNase J complexed with RNA Descriptor: DR2417, GLYCEROL, MANGANESE (II) ION, ... Authors: Lu, M, Zhang, H, Xu, Q, Hua, Y, Zhao, Y. Deposit date: 2015-01-29 Release date: 2015-12-16 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural insights into catalysis and dimerization enhanced exonuclease activity of RNase J Nucleic Acids Res., 43, 2015
8FN4	Cryo-EM structure of RNase-treated RESC-A in trypanosomal RNA editing Descriptor: RNA-editing substrate-binding complex protein 1 (RESC1), RNA-editing substrate-binding complex protein 2 (RESC2), RNA-editing substrate-binding complex protein 3 (RESC3), ... Authors: Liu, S, Wang, H, Li, X, Zhang, F, Lee, J.K.J, Li, Z, Yu, C, Zhao, X, Hu, J.J, Suematsu, T, Alvarez-Cabrera, A.L, Liu, Q, Zhang, L, Huang, L, Aphasizheva, I, Aphasizhev, R, Zhou, Z.H. Deposit date: 2022-12-26 Release date: 2023-07-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing. Science, 381, 2023
4Z4F	Human Argonaute2 Bound to t1-DAP Target RNA Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2015-04-02 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife, 4, 2015
4Z4D	Human Argonaute2 Bound to t1-G Target RNA Descriptor: ISOPROPYL ALCOHOL, MAGNESIUM ION, PHENOL, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2015-04-02 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife, 4, 2015
4Z4C	Human Argonaute2 Bound to t1-C Target RNA Descriptor: ISOPROPYL ALCOHOL, MAGNESIUM ION, PHENOL, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2015-04-02 Release date: 2015-09-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.303 Å) Cite: Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife, 4, 2015
4Z4E	Human Argonaute2 Bound to t1-U Target RNA Descriptor: ISOPROPYL ALCOHOL, MAGNESIUM ION, PHENOL, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2015-04-02 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife, 4, 2015
4Z4G	Human Argonaute2 Bound to t1-Inosine Target RNA Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ... Authors: Schirle, N.T, MacRae, I.J. Deposit date: 2015-04-02 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife, 4, 2015

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