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8HPJ
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Crystal structure of the bacterial oxalate transporter OxlT in a ligand-free outward-facing form
Descriptor: Fv fragment Heavy chain, Fv fragment Light chain, Oxalate:formate antiporter
Authors:Shimamura, T, Hirai, T, Yamashita, A.
Deposit date:2022-12-12
Release date:2023-02-15
Last modified:2023-04-12
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota.
Nat Commun, 14, 2023
8H7B
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BU of 8h7b by Molmil
The crystal structure of human mcl1 kinase domain in complex with MCL1-M-EBA
Descriptor: 7-[3-(isoquinolin-7-yloxymethyl)-1,5-dimethyl-pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1H-indole-2-carboxylic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
Authors:Zhu, C.J, Zhang, Z.M.
Deposit date:2022-10-19
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.46408451 Å)
Cite:2-Ethynylbenzaldehyde-Based, Lysine-Targeting Irreversible Covalent Inhibitors for Protein Kinases and Nonkinases.
J.Am.Chem.Soc., 2023
2DSV
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Interactions of protective signalling factor with chitin-like polysaccharide: Crystal structure of the complex between signalling protein from sheep (SPS-40) and a hexasaccharide at 2.5A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Srivastava, D.B, Ethayathulla, A.S, Kumar, J, Singh, N, Sharma, S, Bhushan, A, Srinivasan, A, Singh, T.P.
Deposit date:2006-07-07
Release date:2006-08-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Carbohydrate binding properties and carbohydrate induced conformational switch in sheep secretory glycoprotein (SPS-40): crystal structures of four complexes of SPS-40 with chitin-like oligosaccharides
J.Struct.Biol., 158, 2007
8GZ1
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Cryo-EM structure of human NaV1.6/beta1/beta2,apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, Sodium channel protein type 8 subunit alpha, ...
Authors:Li, Y, Jiang, D.
Deposit date:2022-09-24
Release date:2023-03-08
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of human Na V 1.6 channel reveals Na + selectivity and pore blockade by 4,9-anhydro-tetrodotoxin.
Nat Commun, 14, 2023
1JTS
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DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA PROTECTION DURING STARVATION PROTEIN
Authors:Luo, J, Liu, D, White, M.A, Fox, R.O.
Deposit date:2001-08-22
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:DNA Protection and Binding by E. Coli Dps Protein
To be Published
8GZ2
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BU of 8gz2 by Molmil
Cryo-EM structure of human NaV1.6/beta1/beta2-4,9-anhydro-tetrodotoxin
Descriptor: (1R,2S,3S,4R,5R,9S,11S,12S,14R)-7-amino-2,4,12-trihydroxy-2-(hydroxymethyl)-10,13,15-trioxa-6,8-diazapentacyclo[7.4.1.1~3,12~.0~5,11~.0~5,14~]pentadec-7-en-8-ium (non-preferred name), 2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein type 8 subunit alpha, ...
Authors:Li, Y, Jiang, D.
Deposit date:2022-09-24
Release date:2023-03-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of human Na V 1.6 channel reveals Na + selectivity and pore blockade by 4,9-anhydro-tetrodotoxin.
Nat Commun, 14, 2023
2DTU
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BU of 2dtu by Molmil
Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog
Descriptor: 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3', DNA polymerase
Authors:Aller, P, Hogg, M, Konigsberg, W, Wallace, S.S, Doublie, S.
Deposit date:2006-07-15
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structural and biochemical investigation of the role in proofreading of a beta hairpin loop found in the exonuclease domain of a replicative DNA polymerase of the B family.
J.Biol.Chem., 282, 2007
2DFC
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BU of 2dfc by Molmil
Xylanase II from Tricoderma reesei at 293K
Descriptor: Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Harata, K, Akiba, T.
Deposit date:2006-02-28
Release date:2006-07-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Structure of an orthorhombic form of xylanase II from Trichoderma reesei and analysis of thermal displacement.
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2DCK
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BU of 2dck by Molmil
A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1
Descriptor: CALCIUM ION, GLYCEROL, xylanase J
Authors:Fibriansah, G, Ihsanawati, Tanaka, N, Nakamura, S, Kumasaka, T.
Deposit date:2006-01-07
Release date:2007-03-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1
To be Published
2DH9
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BU of 2dh9 by Molmil
Solution structure of the C-terminal RNA binding domain in Heterogeneous nuclear ribonucleoprotein M
Descriptor: Heterogeneous nuclear ribonucleoprotein M
Authors:Ochi, T, Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-23
Release date:2006-09-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the C-terminal RNA binding domain in Heterogeneous nuclear ribonucleoprotein M
To be Published
1JYN
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BU of 1jyn by Molmil
E. COLI (lacZ) BETA-GALACTOSIDASE (E537Q) IN COMPLEX WITH LACTOSE
Descriptor: Beta-Galactosidase, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
Authors:Juers, D.H, Matthews, B.W.
Deposit date:2001-09-13
Release date:2001-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Structural View of the Action of Escherichia Coli (Lacz) Beta-Galactosidase
Biochemistry, 40, 2001
2DDK
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BU of 2ddk by Molmil
Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (orthorhombic form)
Descriptor: Inositol monophosphatase 2
Authors:Arai, R, Ito, K, Kamo-Uchikubo, T, Bessho, Y, Ohba, H, Ohnishi, T, Yoshikawa, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-01-30
Release date:2007-02-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
1JMQ
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YAP65 (L30K mutant) WW domain in Complex with GTPPPPYTVG peptide
Descriptor: 65 KDA YES-ASSOCIATED PROTEIN, WW Domain Binding Protein-1
Authors:Pires, J.R, Taha-Nejad, F, Toepert, F, Ast, T, Hoffmuller, U, Schneider-Mergener, J, Kuhne, R, Macias, M.J, Oschkinat, H.
Deposit date:2001-07-19
Release date:2001-12-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope.
J.Mol.Biol., 314, 2001
2DN1
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BU of 2dn1 by Molmil
1.25A resolution crystal structure of human hemoglobin in the oxy form
Descriptor: Hemoglobin alpha subunit, Hemoglobin beta subunit, OXYGEN MOLECULE, ...
Authors:Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
1JP3
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BU of 1jp3 by Molmil
Structure of E.coli undecaprenyl pyrophosphate synthase
Descriptor: 2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL-BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, undecaprenyl pyrophosphate synthase
Authors:Ko, T.P, Chen, Y.K, Robinson, H, Tsai, P.C, Gao, Y.G, Chen, A.P.C, Wang, A.H.J, Liang, P.H.
Deposit date:2001-07-31
Release date:2001-08-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of product chain length determination and the role of a flexible loop in Escherichia coli undecaprenyl-pyrophosphate synthase catalysis.
J.Biol.Chem., 276, 2001
2DIN
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BU of 2din by Molmil
Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein
Descriptor: Cell division cycle 5-like protein
Authors:Yoneyama, M, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-30
Release date:2007-04-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein
To be Published
1JI1
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BU of 1ji1 by Molmil
Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1
Descriptor: ALPHA-AMYLASE I, CALCIUM ION
Authors:Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y.
Deposit date:2001-06-28
Release date:2002-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution.
J.Mol.Biol., 318, 2002
1JRG
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BU of 1jrg by Molmil
Crystal Structure of the R3 form of Pectate Lyase A, Erwinia chrysanthemi
Descriptor: Pectate lyase, SULFATE ION
Authors:Thomas, L.M, Doan, C, Oliver, R.L, Yoder, M.D.
Deposit date:2001-08-13
Release date:2002-06-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of pectate lyase A: comparison to other isoforms.
Acta Crystallogr.,Sect.D, 58, 2002
1JKH
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CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ)
Descriptor: (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE, HIV-1 RT, A-CHAIN, ...
Authors:Ren, J, Nichols, C, Bird, L, Chamberlain, P, Weaver, K, Short, S, Stuart, D.I, Stammers, D.K.
Deposit date:2001-07-12
Release date:2001-10-03
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural mechanisms of drug resistance for mutations at codons 181 and 188 in HIV-1 reverse transcriptase and the improved resilience of second generation non-nucleoside inhibitors.
J.Mol.Biol., 312, 2001
1JLG
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CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH UC-781
Descriptor: 2-METHYL-FURAN-3-CARBOTHIOIC ACID [4-CHLORO-3-(3-METHYL-BUT-2-ENYLOXY)-PHENYL]-AMIDE, HIV-1 RT A-chain, HIV-1 RT B-chain
Authors:Ren, J, Nichols, C, Bird, L, Chamberlain, P, Weaver, K, Short, S, Stuart, D.I, Stammers, D.K.
Deposit date:2001-07-16
Release date:2001-10-03
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural mechanisms of drug resistance for mutations at codons 181 and 188 in HIV-1 reverse transcriptase and the improved resilience of second generation non-nucleoside inhibitors.
J.Mol.Biol., 312, 2001
1JOF
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Neurospora crassa 3-carboxy-cis,cis-mucoante lactonizing enzyme
Descriptor: BETA-MERCAPTOETHANOL, CARBOXY-CIS,CIS-MUCONATE CYCLASE, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID), ...
Authors:Kajander, T, Merckel, M.C, Thompson, A, Deacon, A.M, Mazur, P, Kozarich, J.W, Goldman, A.
Deposit date:2001-07-28
Release date:2002-04-12
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of Neurospora crassa 3-carboxy-cis,cis-muconate lactonizing enzyme, a beta propeller cycloisomerase.
Structure, 10, 2002
1JU3
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BACTERIAL COCAINE ESTERASE COMPLEX WITH TRANSITION STATE ANALOG
Descriptor: PHENYL BORONIC ACID, cocaine esterase
Authors:Larsen, N.A, Turner, J.M, Stevens, J, Rosser, S.J, Basran, A, Lerner, R.A, Bruce, N.C, Wilson, I.A.
Deposit date:2001-08-23
Release date:2001-12-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of a bacterial cocaine esterase.
Nat.Struct.Biol., 9, 2002
1JR8
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Crystal Structure of Erv2p
Descriptor: Erv2 PROTEIN, mitochondrial, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Gross, E, Sevier, C.S, Vala, A, Kaiser, C.A, Fass, D.
Deposit date:2001-08-13
Release date:2001-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A new FAD-binding fold and intersubunit disulfide shuttle in the thiol oxidase Erv2p.
Nat.Struct.Biol., 9, 2002
8HHG
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The bacterial divisome protein complex FtsB-FtsL-FtsQ
Descriptor: Cell division protein FtsB, Cell division protein FtsL, Cell division protein FtsQ
Authors:Nguyen, V.H.T, Chen, X.
Deposit date:2022-11-16
Release date:2023-04-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the heterotrimeric membrane protein complex FtsB-FtsL-FtsQ of the bacterial divisome.
Nat Commun, 14, 2023
8HHH
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The bacterial divisome protein complex FtsB-FtsL-FtsQ
Descriptor: Cell division protein FtsB, Cell division protein FtsL, Cell division protein FtsQ
Authors:Nguyen, V.H.T, Chen, X.
Deposit date:2022-11-16
Release date:2023-04-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the heterotrimeric membrane protein complex FtsB-FtsL-FtsQ of the bacterial divisome.
Nat Commun, 14, 2023

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