Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7OOB
DownloadVisualize
BU of 7oob by Molmil
Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA damage-binding protein 1, ...
Authors:Kokic, G, Cramer, P.
Deposit date:2021-05-27
Release date:2021-10-13
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of human transcription-DNA repair coupling.
Nature, 598, 2021
7OMB
DownloadVisualize
BU of 7omb by Molmil
Crystal structure of KOD DNA Polymerase in a ternary complex with a p/t duplex containing an extended 5' single stranded template overhang
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA polymerase, ...
Authors:Betz, K, Kropp, H.M, Diederichs, K, Marx, A.
Deposit date:2021-05-21
Release date:2021-10-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase.
Chembiochem, 22, 2021
7OO5
DownloadVisualize
BU of 7oo5 by Molmil
Crystal structure of the lignin peroxidase (ApeLiP) from Agrocybe pediades
Descriptor: CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION, ...
Authors:Romero, A, Ruiz-Duenas, F.J.
Deposit date:2021-05-26
Release date:2021-10-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Agaricales Mushroom Lignin Peroxidase: From Structure-Function to Degradative Capabilities.
Antioxidants, 10, 2021
7NZO
DownloadVisualize
BU of 7nzo by Molmil
D-lyxose isomerasefrom the hyperthermophilic archaeon Thermofilum sp
Descriptor: 1,2-ETHANEDIOL, D-lyxose/D-mannose family sugar isomerase, MANGANESE (II) ION
Authors:De Rose, S.A, Isupov, M.N, Littlechild, J.A, Schoenheit, P.
Deposit date:2021-03-24
Release date:2021-10-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Biochemical and Structural Characterisation of a Novel D-Lyxose Isomerase From the Hyperthermophilic Archaeon Thermofilum sp.
Front Bioeng Biotechnol, 9, 2021
7O38
DownloadVisualize
BU of 7o38 by Molmil
cytochrome C kustc0562 from Kuenenia stuttgartiensis
Descriptor: CHLORIDE ION, Cytochrome c-552 Ks_3357, HEME C, ...
Authors:Bock, J, Akram, M, Barends, T.
Deposit date:2021-04-01
Release date:2021-10-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Specificity of Small c -Type Cytochromes in Anaerobic Ammonium Oxidation.
Acs Omega, 6, 2021
4V8E
DownloadVisualize
BU of 4v8e by Molmil
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
Descriptor: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
Authors:Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
Deposit date:2011-12-07
Release date:2014-07-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V9P
DownloadVisualize
BU of 4v9p by Molmil
Control of ribosomal subunit rotation by elongation factor G
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Pulk, A, Cate, J.H.D.
Deposit date:2013-05-03
Release date:2014-07-09
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Control of ribosomal subunit rotation by elongation factor G.
Science, 340, 2013
7O2V
DownloadVisualize
BU of 7o2v by Molmil
AURORA KINASE A IN COMPLEX WITH THE AUR-A/PDK1 INHIBITOR VI8
Descriptor: 1-[[3,4-bis(fluoranyl)phenyl]methyl]-~{N}-[(1~{R})-2-[[(3~{E})-3-(1~{H}-imidazol-5-ylmethylidene)-2-oxidanylidene-1~{H}-indol-5-yl]amino]-2-oxidanylidene-1-phenyl-ethyl]-6-methyl-2-oxidanylidene-pyridine-3-carboxamide, Aurora kinase A
Authors:Garau, G.
Deposit date:2021-03-31
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Development of potent dual PDK1/AurA kinase inhibitors for cancer therapy: Lead-optimization, structural insights, and ADME-Tox profile.
Eur.J.Med.Chem., 226, 2021
6NRI
DownloadVisualize
BU of 6nri by Molmil
Crystal Structure of human PARP-1 ART domain bound to inhibitor UTT83
Descriptor: (2Z)-2-{[4-(3-cyclopropyl-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl)phenyl]methylidene}-3-oxo-2,3-dihydro-1-benzofuran-7-carboxamide, CHLORIDE ION, CITRIC ACID, ...
Authors:Langelier, M.F, Pascal, J.M.
Deposit date:2019-01-23
Release date:2019-08-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design and Synthesis of Poly(ADP-ribose) Polymerase Inhibitors: Impact of Adenosine Pocket-Binding Motif Appendage to the 3-Oxo-2,3-dihydrobenzofuran-7-carboxamide on Potency and Selectivity.
J.Med.Chem., 62, 2019
7OPC
DownloadVisualize
BU of 7opc by Molmil
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4)
Descriptor: Cullin-4A, DNA damage-binding protein 1, DNA excision repair protein ERCC-6, ...
Authors:Kokic, G, Cramer, P.
Deposit date:2021-05-31
Release date:2021-10-13
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of human transcription-DNA repair coupling.
Nature, 598, 2021
7NX2
DownloadVisualize
BU of 7nx2 by Molmil
Unbound antigen-binding fragment (FAb) 324
Descriptor: FAb 324 Heavy Chain, FAb 324 Light Chain, SULFATE ION
Authors:De Munck, S, Savvides, S.N.
Deposit date:2021-03-17
Release date:2021-10-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural basis of cytokine-mediated activation of ALK family receptors.
Nature, 600, 2021
7OM3
DownloadVisualize
BU of 7om3 by Molmil
Crystal structure of KOD DNA Polymerase in a binary complex with Hypoxanthine containing template
Descriptor: 1,2-ETHANEDIOL, 21nt Template, BROMIDE ION, ...
Authors:Betz, K, Kropp, H.M, Diederichs, K, Marx, A.
Deposit date:2021-05-21
Release date:2021-10-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase.
Chembiochem, 22, 2021
3EIO
DownloadVisualize
BU of 3eio by Molmil
Crystal Structure Analysis of DPPIV Inhibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-({4-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]-1,4-diazepan-1-yl}carbonyl)benzoic acid, ...
Authors:Ahn, J.H, Lee, J.-O.
Deposit date:2008-09-17
Release date:2008-11-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Synthesis and biological evaluation of homopiperazine derivatives with beta-aminoacyl group as dipeptidyl peptidase IV inhibitors
Bioorg.Med.Chem.Lett., 18, 2008
7NX0
DownloadVisualize
BU of 7nx0 by Molmil
LTK:ALKAL1 complex stabilized by a Nanobody
Descriptor: ALK and LTK ligand 1, Leukocyte tyrosine kinase receptor, Nb3.16, ...
Authors:De Munck, S, Savvides, S.N.
Deposit date:2021-03-17
Release date:2021-10-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis of cytokine-mediated activation of ALK family receptors.
Nature, 600, 2021
4V8D
DownloadVisualize
BU of 4v8d by Molmil
Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
Descriptor: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
Authors:Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
Deposit date:2011-12-07
Release date:2014-07-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
7OH1
DownloadVisualize
BU of 7oh1 by Molmil
Tetanus neurotoxin LC-HN domain in complex with TT110-Fab1
Descriptor: FAB TT110, Tetanus toxin
Authors:Grinzato, A, Kandiah, E, Zanotti, G.
Deposit date:2021-05-07
Release date:2021-10-27
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Exceptionally potent human monoclonal antibodies are effective for prophylaxis and treatment of tetanus in mice.
J.Clin.Invest., 131, 2021
7OH0
DownloadVisualize
BU of 7oh0 by Molmil
Tetanus neurotoxin HC domain in complex with TT104-Fab1
Descriptor: Fab TT104, Tetanus toxin
Authors:Grinzato, A, Kandiah, E, Zanotti, G.
Deposit date:2021-05-07
Release date:2021-10-27
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Exceptionally potent human monoclonal antibodies are effective for prophylaxis and treatment of tetanus in mice.
J.Clin.Invest., 131, 2021
4V95
DownloadVisualize
BU of 4v95 by Molmil
Crystal structure of YAEJ bound to the 70S ribosome
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Gagnon, M.G, Seetharaman, S.V, Bulkley, D.P, Steitz, T.A.
Deposit date:2012-01-27
Release date:2014-07-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome.
Science, 335, 2012
7OI6
DownloadVisualize
BU of 7oi6 by Molmil
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1
Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
Authors:Cheng, J, Berninghausen, O, Beckmann, R.
Deposit date:2021-05-11
Release date:2021-10-13
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:A distinct assembly pathway of the human 39S late pre-mitoribosome.
Nat Commun, 12, 2021
7OHV
DownloadVisualize
BU of 7ohv by Molmil
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
Descriptor: 25S rRNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, 5.8S rRNA, ...
Authors:Milkereit, P, Poell, G.
Deposit date:2021-05-11
Release date:2021-11-03
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors.
Plos One, 16, 2021
7OHX
DownloadVisualize
BU of 7ohx by Molmil
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A
Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ...
Authors:Milkereit, P, Poell, G.
Deposit date:2021-05-11
Release date:2021-11-03
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors.
Plos One, 16, 2021
7OHQ
DownloadVisualize
BU of 7ohq by Molmil
Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Milkereit, P, Poell, G.
Deposit date:2021-05-11
Release date:2021-11-03
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors.
Plos One, 16, 2021
7OHS
DownloadVisualize
BU of 7ohs by Molmil
Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae
Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ...
Authors:Milkereit, P, Poell, G.
Deposit date:2021-05-11
Release date:2021-11-03
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.38 Å)
Cite:Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors.
Plos One, 16, 2021
4V9S
DownloadVisualize
BU of 4v9s by Molmil
Crystal structure of antibiotic GE82832 bound to 70S ribosome
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Bulkley, D.P, Brandi, L, Polikanov, Y.S, Fabbretti, A, O'Connor, M, Gualerzi, C.O, Steitz, T.A.
Deposit date:2013-12-05
Release date:2014-07-09
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep, 6, 2014
4V6D
DownloadVisualize
BU of 4v6d by Molmil
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zhang, W, Dunkle, J.A, Cate, J.H.D.
Deposit date:2009-06-27
Release date:2014-07-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.814 Å)
Cite:Structures of the ribosome in intermediate States of ratcheting.
Science, 325, 2009

243911

PDB entries from 2025-10-29

PDB statisticsPDBj update infoContact PDBjnumon