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3PQD
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BU of 3pqd by Molmil
Crystal structure of L-lactate dehydrogenase from Bacillus subtilis complexed with FBP and NAD+
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, L-lactate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Zhang, Y, Garavito, R.M.
Deposit date:2010-11-26
Release date:2012-01-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.376 Å)
Cite:Crystal structure of L-lactate dehydrogenase from Bacillus subtilis complexed with FBP and NAD+
To be Published
1H80
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BU of 1h80 by Molmil
1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE- 3,6-ANHYDRO-D-GALACTOSE-2-SULFATE 4 GALACTOHYDROLASE
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Michel, G, Chantalat, L, Dideberg, O.
Deposit date:2001-01-22
Release date:2001-11-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Iota-Carrageenase of Alteromonas Fortis. A Beta-Helix Fold-Containing Enzyme for the Degradation of a Highly Polyanionic Polysaccharide
J.Biol.Chem., 276, 2001
2XJK
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BU of 2xjk by Molmil
Monomeric Human Cu,Zn Superoxide dismutase
Descriptor: COPPER (II) ION, SUPEROXIDE DISMUTASE [CU-ZN], ZINC ION
Authors:Saraboji, K, Leinartaite, L, Nordlund, A, Oliveberg, M, Logan, D.T.
Deposit date:2010-07-07
Release date:2010-09-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Folding Catalysis by Transient Coordination of Zn2+ to the Cu Ligands of the Als-Associated Enzyme Cu/Zn Superoxide Dismutase 1.
J.Am.Chem.Soc., 132, 2010
5UP7
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BU of 5up7 by Molmil
Crystal Structure of the Ni-bound Human Heavy-Chain Ferritin 122H-delta C-star variant
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Bailey, J.B, Zhang, L, Chiong, J.A, Ahn, S, Tezcan, F.A.
Deposit date:2017-02-01
Release date:2017-06-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Synthetic Modularity of Protein-Metal-Organic Frameworks.
J. Am. Chem. Soc., 139, 2017
4J49
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BU of 4j49 by Molmil
PylD holoenzyme soaked with L-lysine-Ne-D-ornithine
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Quitterer, F, Beck, P, Bacher, A, Groll, M.
Deposit date:2013-02-06
Release date:2013-06-12
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and Reaction Mechanism of Pyrrolysine Synthase (PylD).
Angew.Chem.Int.Ed.Engl., 52, 2013
7JGM
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BU of 7jgm by Molmil
Crystal Structure of the Ni-bound Human Heavy-chain variant 122H-delta C-star with meta-benzenedihyrdoxamate
Descriptor: Ferritin heavy chain, NICKEL (II) ION, N~1~,N~3~-dihydroxybenzene-1,3-dicarboxamide, ...
Authors:Bailey, J.B, Tezcan, F.A.
Deposit date:2020-07-19
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks.
J.Am.Chem.Soc., 142, 2020
4GL4
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BU of 4gl4 by Molmil
Crystal structure of oxidized S-nitrosoglutathione reductase from Arabidopsis thalina, complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase class-3, SULFATE ION, ...
Authors:Weichsel, A, Crotty, J, Montfort, W.R.
Deposit date:2012-08-13
Release date:2013-02-27
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure and kinetic behavior of alcohol dehydrogenase III/S-nitrosoglutathione reductase from arabidopsis thalina
To be Published
4GL7
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BU of 4gl7 by Molmil
Structure of human placental aromatase complexed with designed inhibitor HDDG046 (compound 5)
Descriptor: (6alpha,8alpha)-6-(pent-2-yn-1-yloxy)androsta-1,4-diene-3,17-dione, Cytochrome P450 19A1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ghosh, D.
Deposit date:2012-08-13
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Novel aromatase inhibitors by structure-guided design.
J.Med.Chem., 55, 2012
4GUJ
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BU of 4guj by Molmil
1.50 Angstrom Crystal Structure of the Salmonella enterica 3-Dehydroquinate Dehydratase (aroD) in Complex with Shikimate
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, 3-dehydroquinate dehydratase, ZINC ION
Authors:Light, S.H, Minasov, G, Duban, M.-E, Shuvalova, L, Kwon, K, Lavie, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-08-29
Release date:2012-09-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of type I dehydroquinate dehydratase in complex with quinate and shikimate suggest a novel mechanism of schiff base formation.
Biochemistry, 53, 2014
4I8P
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BU of 4i8p by Molmil
Crystal structure of aminoaldehyde dehydrogenase 1a from Zea mays (ZmAMADH1a)
Descriptor: 1,2-ETHANEDIOL, Aminoaldehyde dehydrogenase 1, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2012-12-04
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Plant ALDH10 family: identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate.
J.Biol.Chem., 288, 2013
4JTQ
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BU of 4jtq by Molmil
AKR1C2 complex with flurbiprofen
Descriptor: 1,2-ETHANEDIOL, Aldo-keto reductase family 1 member C2, FLURBIPROFEN, ...
Authors:Yosaatmadja, Y, Flanagan, J.U, Squire, C.J.
Deposit date:2013-03-24
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis of NSAID selectivity for the AKR1C family
To be Published
3SFE
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BU of 3sfe by Molmil
crystal structure of porcine mitochondrial respiratory complex II bound with oxaloacetate and thiabendazole
Descriptor: 2-(1,3-THIAZOL-4-YL)-1H-BENZIMIDAZOLE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Zhou, Q.J, Zhai, Y.J, Liu, M, Sun, F.
Deposit date:2011-06-13
Release date:2011-09-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Thiabendazole inhibits ubiquinone reduction activity of mitochondrial respiratory complex II via a water molecule mediated binding feature.
Protein Cell, 2, 2011
4GVX
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BU of 4gvx by Molmil
Crystal structure of a short chain dehydrogenase homolog (target EFI-505321) from burkholderia multivorans, with bound NADP and L-fucose
Descriptor: 1,2-ETHANEDIOL, 3-oxoacyl-[acyl-carrier protein] reductase, CHLORIDE ION, ...
Authors:Vetting, M.W, Hobbs, M.E, Morisco, L.L, Wasserman, S.R, Sojitra, S, Imker, H.J, Raushel, F.M, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-08-31
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Crystal structure of a short chain dehydrogenase homolog (target EFI-505321) from burkholderia multivorans, with bound NADP and L-fucose
To be Published
4H95
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BU of 4h95 by Molmil
Candida albicans dihydrofolate reductase complexed with NADPH and 6-ethyl-5-{3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine (UCP1006)
Descriptor: 6-ethyl-5-{(3R)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine, Dihydrofolate Reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Paulsen, J.L, Anderson, A.C.
Deposit date:2012-09-24
Release date:2013-03-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural analysis of the active sites of dihydrofolate reductase from two species of Candida uncovers ligand-induced conformational changes shared among species.
Bioorg.Med.Chem.Lett., 23, 2013
3O0K
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BU of 3o0k by Molmil
Crystal structure of ALDO/KETO reductase from brucella melitensis
Descriptor: 1,2-ETHANEDIOL, Aldo/keto reductase, GLYCEROL
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2010-07-19
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ALDO/KETO reductase from brucella melitensis
TO BE PUBLISHED
5R8I
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BU of 5r8i by Molmil
PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z210803634 in complex with INTERLEUKIN-1 BETA
Descriptor: (1~{R})-1-(4-ethoxyphenyl)ethanamine, Interleukin-1 beta, SULFATE ION
Authors:De Nicola, G.F, Nichols, C.E.
Deposit date:2020-03-03
Release date:2020-04-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes.
J.Med.Chem., 63, 2020
4JQA
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BU of 4jqa by Molmil
AKR1C2 complex with mefenamic acid
Descriptor: 1,2-ETHANEDIOL, 2-[(2,3-DIMETHYLPHENYL)AMINO]BENZOIC ACID, Aldo-keto reductase family 1 member C2, ...
Authors:Yosaatmadja, Y, Flanagan, J.U, Squire, C.J.
Deposit date:2013-03-20
Release date:2014-04-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural basis of NSAID selectivity for the aldo-keto reductase 1C family
To be Published
3NTR
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BU of 3ntr by Molmil
Crystal structure of K97V mutant of myo-inositol dehydrogenase from Bacillus subtilis with bound cofactor NAD and inositol
Descriptor: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Van Straaten, K.E, Palmer, D.R.J, Sanders, D.A.R.
Deposit date:2010-07-05
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6503 Å)
Cite:Structural investigation of myo-inositol dehydrogenase from Bacillus subtilis: implications for catalytic mechanism and inositol dehydrogenase subfamily classification.
Biochem.J., 432, 2010
2MNX
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BU of 2mnx by Molmil
Major groove orientation of the (2S)-N6-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene
Descriptor: 5'-D(*CP*GP*GP*AP*CP*(6HB)P*AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'
Authors:Kowal, E.A, Kotapati, S, Turo, M, Tretyakova, N, Stone, M.P.
Deposit date:2014-04-16
Release date:2014-10-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Major Groove Orientation of the (2S)-N(6)-(2-Hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA Adduct Induced by 1,2-Epoxy-3-butene.
Chem.Res.Toxicol., 27, 2014
3OBB
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BU of 3obb by Molmil
Crystal structure of a possible 3-hydroxyisobutyrate Dehydrogenase from pseudomonas aeruginosa pao1
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ...
Authors:Tan, K, Singer, A.U, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A.M, Yakunin, A.F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-08-06
Release date:2010-08-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biochemical and Structural Studies of Uncharacterized Protein PA0743 from Pseudomonas aeruginosa Revealed NAD+-dependent L-Serine Dehydrogenase.
J.Biol.Chem., 287, 2012
7JGN
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BU of 7jgn by Molmil
Crystal Structure of the Zn-bound Human Heavy-chain variant 122H-delta C-star with meta-benzenedihyrdoxamate collected at 100K
Descriptor: Ferritin heavy chain, N~1~,N~3~-dihydroxybenzene-1,3-dicarboxamide, SODIUM ION, ...
Authors:Bailey, J.B, Tezcan, F.A.
Deposit date:2020-07-19
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks.
J.Am.Chem.Soc., 142, 2020
4J1T
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BU of 4j1t by Molmil
Crystal structure of Thermus thermophilus transhydrogenase heterotrimeric complex of the Alpha1 subunit dimer with the NADP binding domain (domain III) of the Beta subunit in P2(1)
Descriptor: GLYCEROL, NAD(P) transhydrogenase subunit beta, NAD/NADP transhydrogenase alpha subunit 1, ...
Authors:Yamaguchi, M, Leung, J, Schurig Briccio, L.A, Gennis, R.B, Stout, C.D.
Deposit date:2013-02-02
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure analysis of Thermus thermophilus transhydrogenase soluble domains
To be Published
1I6M
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BU of 1i6m by Molmil
1.7 HIGH RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANYL-TRNA SYNTHETASE COMPLEXED WITH TRYPTOPHANYL-5'AMP
Descriptor: AMMONIUM ION, GLYCEROL, SULFATE ION, ...
Authors:Retailleau, P, Carter, C.W.
Deposit date:2001-03-02
Release date:2001-11-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:High-resolution experimental phases for tryptophanyl-tRNA synthetase (TrpRS) complexed with tryptophanyl-5'AMP.
Acta Crystallogr.,Sect.D, 57, 2001
4JQ4
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AKR1C2 complex with indomethacin
Descriptor: 1,2-ETHANEDIOL, Aldo-keto reductase family 1 member C2, INDOMETHACIN, ...
Authors:Yosaatmadja, Y, Flanagan, J.U, Squire, C.J.
Deposit date:2013-03-19
Release date:2014-04-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural basis of NSAID selectivity for the aldo-keto reductase 1C family
To be Published
3FQ0
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BU of 3fq0 by Molmil
Staphylococcus aureus dihydrofolate reductase complexed with NADPH and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-ynyl)-6-ethylpyrimidine (UCP120B)
Descriptor: 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Trimethoprim-sensitive dihydrofolate reductase
Authors:Anderson, A.C, Frey, K.M, Liu, J, Lombardo, M.N.
Deposit date:2009-01-06
Release date:2009-03-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structures of wild-type and mutant methicillin-resistant Staphylococcus aureus dihydrofolate reductase reveal an alternate conformation of NADPH that may be linked to trimethoprim resistance.
J.Mol.Biol., 387, 2009

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