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PDB: 351 results

3MUN
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BU of 3mun by Molmil
APPEP_PEPCLOSE closed state
Descriptor: GLYCEROL, Prolyl endopeptidase, SULFATE ION, ...
Authors:Chiu, T.K.
Deposit date:2010-05-03
Release date:2011-05-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Route of Substrate Entry in Prolyl Endopeptidase
TO BE PUBLISHED
3MUO
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BU of 3muo by Molmil
APPEP_PEPCLOSE+PP closed state
Descriptor: GLYCEROL, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, Prolyl endopeptidase, ...
Authors:Chiu, T.K.
Deposit date:2010-05-03
Release date:2011-06-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Route of Substrate Entry in Prolyl Endopeptidase
TO BE PUBLISHED
3OBV
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BU of 3obv by Molmil
Autoinhibited Formin mDia1 Structure
Descriptor: Protein diaphanous homolog 1, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Tomchick, D.R, Rosen, M.K, Otomo, T.
Deposit date:2010-08-09
Release date:2010-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of the Formin mDia1 in autoinhibited conformation.
Plos One, 5, 2010
3OVN
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BU of 3ovn by Molmil
Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase
Descriptor: 1-methyl-3-(thiophen-2-yl)-1H-pyrazol-5-amine, CADMIUM ION, POL polyprotein, ...
Authors:Wielens, J, Chalmers, D.K, Headey, S.J, Deadman, J.J, Rhodes, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2010-09-16
Release date:2011-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1
Chemmedchem, 6, 2011
3Q73
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BU of 3q73 by Molmil
Cryptococcus neoformans protein farnesyltransferase, apo enzyme
Descriptor: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, Farnesyltransferase, alpha subunit, ...
Authors:Hast, M.A, Beese, L.S.
Deposit date:2011-01-04
Release date:2011-08-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens.
J.Biol.Chem., 286, 2011
3Q7A
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BU of 3q7a by Molmil
Cryptococcus neoformans protein farnesyltransferase in complex with FPP and L-778,123
Descriptor: (2R)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, 4-[(5-{[4-(3-CHLOROPHENYL)-3-OXOPIPERAZIN-1-YL]METHYL}-1H-IMIDAZOL-1-YL)METHYL]BENZONITRILE, FARNESYL DIPHOSPHATE, ...
Authors:Hast, M.A, Beese, L.S.
Deposit date:2011-01-04
Release date:2011-08-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens.
J.Biol.Chem., 286, 2011
3Q7F
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BU of 3q7f by Molmil
Cryptococcus neoformans protein farnesyltransferase in complex with FPP and ethylenediamine inhibitor 1
Descriptor: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, FARNESYL DIPHOSPHATE, Farnesyltransferase alpha subunit, ...
Authors:Hast, M.A, Beese, L.S.
Deposit date:2011-01-04
Release date:2011-08-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens.
J.Biol.Chem., 286, 2011
3QGV
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BU of 3qgv by Molmil
Crystal structure of a thermostable amylase variant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha amylase, CALCIUM ION, ...
Authors:Hein, K.L, Ganshaw, G, Bott, R, Nissen, P.
Deposit date:2011-01-25
Release date:2012-02-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of a highly mutated, thermostable \xCE\xB1-amylase variant
To be Published
3QPH
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BU of 3qph by Molmil
The three-dimensional structure of TrmB, a global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose
Descriptor: ACETATE ION, GLYCEROL, TrmB, ...
Authors:Krug, M, Lee, S.-J, Boos, W, Welte, W, Diederichs, K.
Deposit date:2011-02-13
Release date:2012-05-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.992 Å)
Cite:The three-dimensional structure of TrmB, a transcriptional regulator of dual function in the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose.
Protein Sci., 22, 2013
3QYQ
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BU of 3qyq by Molmil
1.8 Angstrom resolution crystal structure of a putative deoxyribose-phosphate aldolase from Toxoplasma gondii ME49
Descriptor: Deoxyribose-phosphate aldolase, putative, SULFATE ION, ...
Authors:Halavaty, A.S, Ruan, J, Minasov, G, Shuvalova, L, Ueno, A, Igarashi, M, Ngo, H, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-03-03
Release date:2011-03-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional divergence of the aldolase fold in Toxoplasma gondii.
J.Mol.Biol., 427, 2015
3R1B
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BU of 3r1b by Molmil
Open crystal structure of cytochrome P450 2B4 covalently bound to the mechanism-based inactivator tert-butylphenylacetylene
Descriptor: (4-tert-butylphenyl)acetaldehyde, 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, Cytochrome P450 2B4, ...
Authors:Gay, S.C, Zhang, H, Stout, C.D, Hollenberg, P.F, Halpert, J.R.
Deposit date:2011-03-09
Release date:2011-05-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Analysis of Mammalian Cytochrome P450 2B4 Covalently Bound to the Mechanism-Based Inactivator tert-Butylphenylacetylene: Insight into Partial Enzymatic Activity.
Biochemistry, 50, 2011
3S7Z
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BU of 3s7z by Molmil
Crystal Structure of Putative Aspartate Racemase from Salmonella Typhimurium Complexed with Succinate
Descriptor: MAGNESIUM ION, Putative aspartate racemase, SUCCINIC ACID, ...
Authors:Maltseva, N, Zhang, R, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-05-27
Release date:2011-10-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Crystal Structure of Putative Aspartate Racemase from Salmonella Typhimurium Complexed with Succinate.
To be Published
3SO3
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BU of 3so3 by Molmil
Structures of Fab-Protease Complexes Reveal a Highly Specific Non-Canonical Mechanism of Inhibition.
Descriptor: A11 FAB heavy chain, A11 FAB light chain, GLYCEROL, ...
Authors:Schneider, E.L, Farady, C.J, Egea, P.F, Goetz, D.H, Baharuddin, A, Craik, C.S.
Deposit date:2011-06-29
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A reverse binding motif that contributes to specific protease inhibition by antibodies.
J.Mol.Biol., 415, 2012
3SP3
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BU of 3sp3 by Molmil
Lysozyme in 20% sucrose
Descriptor: CHLORIDE ION, Lysozyme, SODIUM ION, ...
Authors:Sharma, P, Solanki, A.K, Ashish
Deposit date:2011-07-01
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Lysozyme in 20% sucrose
to be published
3T3Z
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BU of 3t3z by Molmil
Human Cytochrome P450 2E1 in complex with pilocarpine
Descriptor: (3S,4R)-3-ethyl-4-[(1-methyl-1H-imidazol-5-yl)methyl]dihydrofuran-2(3H)-one, Cytochrome P450 2E1, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Meneely, K.M, DeVore, N.M, Scott, E.E.
Deposit date:2011-07-25
Release date:2011-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural comparison of cytochromes P450 2A6, 2A13, and 2E1 with pilocarpine.
Febs J., 279, 2012
3T6U
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BU of 3t6u by Molmil
Crystal Structure of Lysozyme in 40% sucrose
Descriptor: CHLORIDE ION, Lysozyme, SODIUM ION, ...
Authors:Sharma, P, Singh, S, Ashish
Deposit date:2011-07-29
Release date:2011-08-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.213 Å)
Cite:Crystal Structure of Lysozyme in 40% sucrose
to be published
3TAN
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BU of 3tan by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-1) Position
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*AP*CP*GP*T*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*C)-3', ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TAP
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BU of 3tap by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-3) Position
Descriptor: 5'-D(*G*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', DNA polymerase I, ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.655 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TAQ
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BU of 3taq by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-4) Position
Descriptor: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*C*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*G)-3', DNA polymerase I, ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TAR
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BU of 3tar by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-6) Position
Descriptor: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*GP*TP*C)-3', DNA polymerase I, ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3VF1
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BU of 3vf1 by Molmil
Structure of a calcium-dependent 11R-lipoxygenase suggests a mechanism for Ca-regulation
Descriptor: 11R-lipoxygenase, FE (II) ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Eek, P, Jarving, R, Jarving, I, Gilbert, N.C, Newcomer, M.E, Samel, N.
Deposit date:2012-01-09
Release date:2012-05-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.473 Å)
Cite:Structure of a Calcium-dependent 11R-Lipoxygenase Suggests a Mechanism for Ca2+ Regulation.
J.Biol.Chem., 287, 2012
3VQ7
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BU of 3vq7 by Molmil
HIV-1 IN core domain in complex with 4-(1H-pyrrol-1-yl)aniline
Descriptor: 4-(1H-pyrrol-1-yl)aniline, CADMIUM ION, POL polyprotein, ...
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-20
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
3VQA
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BU of 3vqa by Molmil
HIV-1 IN core domain in complex with 1-benzothiophen-6-amine 1,1-dioxide
Descriptor: 1-benzothiophen-6-amine 1,1-dioxide, CADMIUM ION, POL polyprotein, ...
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-20
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
3VQQ
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BU of 3vqq by Molmil
HIV-1 integrase core domain in complex with 2,1,3-benzothiadiazol-4-amine
Descriptor: 2,1,3-benzothiadiazol-4-amine, CADMIUM ION, POL polyprotein, ...
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-29
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
4B9L
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BU of 4b9l by Molmil
Structure of the high fidelity DNA polymerase I with the oxidative formamidopyrimidine-dA DNA lesion in the pre-insertion site.
Descriptor: 5'-D(*CP*AP*GP*FAX*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3', 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*TP)-3', DNA POLYMERASE I, ...
Authors:Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
Deposit date:2012-09-05
Release date:2013-04-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013

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