Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8TZ9
DownloadVisualize
BU of 8tz9 by Molmil
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT2 conformation
Descriptor: N-hydroxy-5'-O-(2-methylpropanoyl)cytidine, Sodium/nucleoside cotransporter
Authors:Wright, N.J, Lee, S.-Y.
Deposit date:2023-08-26
Release date:2024-03-13
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Antiviral drug recognition and elevator-type transport motions of CNT3.
Nat.Chem.Biol., 20, 2024
8TZ8
DownloadVisualize
BU of 8tz8 by Molmil
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT3 conformation
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, N-hydroxy-5'-O-(2-methylpropanoyl)cytidine, Sodium/nucleoside cotransporter
Authors:Wright, N.J, Lee, S.-Y.
Deposit date:2023-08-26
Release date:2024-03-13
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Antiviral drug recognition and elevator-type transport motions of CNT3.
Nat.Chem.Biol., 20, 2024
8TZ7
DownloadVisualize
BU of 8tz7 by Molmil
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT1 conformation
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, N-hydroxy-5'-O-(2-methylpropanoyl)cytidine, Sodium/nucleoside cotransporter
Authors:Wright, N.J, Lee, S.-Y.
Deposit date:2023-08-26
Release date:2024-03-13
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Antiviral drug recognition and elevator-type transport motions of CNT3.
Nat.Chem.Biol., 20, 2024
8TZ0
DownloadVisualize
BU of 8tz0 by Molmil
Structure of a bacterial E1-E2-Ubl complex (form 1)
Descriptor: E1(BilD), E2(BilB), Ubl(BilA), ...
Authors:Ye, Q, Chambers, L.R, Corbett, K.D.
Deposit date:2023-08-26
Release date:2024-06-12
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:A eukaryotic-like ubiquitination system in bacterial antiviral defence.
Nature, 631, 2024
8TYQ
DownloadVisualize
BU of 8tyq by Molmil
Structure of the C-terminal half of LRRK2 bound to GZD-824 (G2019S mutant)
Descriptor: 4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-3-[(1H-pyrazolo[3,4-b]pyridin-5-yl)ethynyl]benzamide, Designed Ankyrin Repeats Protein E11, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Villagran-Suarez, A, Sanz-Murillo, M, Alegrio-Louro, J, Leschziner, A.
Deposit date:2023-08-25
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Inhibition of Parkinson's disease-related LRRK2 by type I and type II kinase inhibitors: Activity and structures.
Sci Adv, 9, 2023
8TYP
DownloadVisualize
BU of 8typ by Molmil
Complement Protease C1s Inhibited by 6-(4-phenylpiperazin-1-yl)pyridine-3-carboximidamide
Descriptor: 6-(4-phenylpiperazin-1-yl)pyridine-3-carboximidamide, Complement C1s subcomponent, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Geisbrecht, B.V.
Deposit date:2023-08-25
Release date:2023-11-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibition of the C1s Protease and the Classical Complement Pathway by 6-(4-Phenylpiperazin-1-yl)Pyridine-3-Carboximidamide and Chemical Analogs.
J Immunol., 212, 2024
8TYO
DownloadVisualize
BU of 8tyo by Molmil
Structural and biochemical rationale for Beta variant protein booster vaccine broad cross-neutralization of SARS-CoV-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Bruch, E.M, Rak, A.
Deposit date:2023-08-25
Release date:2024-02-07
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural and biochemical rationale for Beta variant protein booster vaccine broad cross-neutralization of SARS-CoV-2.
Sci Rep, 14, 2024
8TYL
DownloadVisualize
BU of 8tyl by Molmil
Structural and biochemical rationale for Beta variant protein booster vaccine broad cross-neutralization of SARS-CoV-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Bruch, E.M, Rak, A.
Deposit date:2023-08-25
Release date:2024-02-07
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural and biochemical rationale for Beta variant protein booster vaccine broad cross-neutralization of SARS-CoV-2.
Sci Rep, 14, 2024
8TYJ
DownloadVisualize
BU of 8tyj by Molmil
Crystal structure of SARS-CoV-2 nsp10/nsp16 complex with bound SAH
Descriptor: 2'-O-methyltransferase, GLYCEROL, Non-structural protein 10, ...
Authors:Patel, K.P, Bruner, S.D.
Deposit date:2023-08-25
Release date:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of SARS-CoV-2 nsp10/nsp16 complex with bound SAH
To Be Published
8TYH
DownloadVisualize
BU of 8tyh by Molmil
Plasmodium vivax PMX
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-tungstotellurate(VI), Aspartyl protease, ...
Authors:Hodder, A.N, Scally, S.W, Cowman, A.F.
Deposit date:2023-08-25
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Plasmodium vivax PMX
To Be Published
8TYG
DownloadVisualize
BU of 8tyg by Molmil
Plasmodium vivax PMV-WM08 inhibitor complex
Descriptor: (2E,4aR,7aS)-6-[3-(4-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hodder, A.N, Scally, S.W, Cowman, A.F.
Deposit date:2023-08-25
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Plasmodium vivax PMV-WM08 inhibitor complex
To Be Published
8TY5
DownloadVisualize
BU of 8ty5 by Molmil
MI-14 bound to Mpro of SARS-CoV-2
Descriptor: (1R,2S,5S)-3-[(2,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5
Authors:Blankenship, L.R, Liu, W.R.
Deposit date:2023-08-24
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:MI-14 bound to SARS-CoV-2 Mpro
To Be Published
8TY4
DownloadVisualize
BU of 8ty4 by Molmil
MI-30 bound to Mpro of SARS-CoV-2
Descriptor: (1S,3aR,6aS)-2-[(2,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide, 3C-like proteinase nsp5
Authors:Blankenship, L.R, Liu, W.R.
Deposit date:2023-08-24
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:MI-30 bound to SARS-CoV-2 Mpro
To Be Published
8TY3
DownloadVisualize
BU of 8ty3 by Molmil
MI-31 ligand bound to SARS-CoV-2 Mpro
Descriptor: (1S,3aR,6aS)-2-[(3,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide, 3C-like proteinase nsp5
Authors:Blankenship, L.R, Liu, W.R.
Deposit date:2023-08-24
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:MI-31 bound to SARS-CoV-2 Mpro
To Be Published
8TXY
DownloadVisualize
BU of 8txy by Molmil
X-ray crystal structure of JRD-SIK1/2i-3 bound to a MARK2-SIK2 chimera
Descriptor: DI(HYDROXYETHYL)ETHER, N-[(5P,8R)-5-(2-cyano-5-{[(3R)-1-methylpyrrolidin-3-yl]methoxy}pyridin-4-yl)pyrazolo[1,5-a]pyridin-2-yl]cyclopropanecarboxamide, SULFATE ION, ...
Authors:Raymond, D.D, Lemke, C.T, Shaffer, P.L, Collins, B, Steele, R, Seierstad, M.
Deposit date:2023-08-24
Release date:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification of highly selective SIK1/2 inhibitors that modulate innate immune activation and suppress intestinal inflammation.
Proc.Natl.Acad.Sci.USA, 121, 2024
8TXS
DownloadVisualize
BU of 8txs by Molmil
Solution NMR structure of designed peptide BH26 (RGVTVPHNGESKDYSV)
Descriptor: BH26 peptide
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-08-24
Release date:2023-09-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8TXL
DownloadVisualize
BU of 8txl by Molmil
Nan Regulatory Protein full length mutant R148A
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Wood, D.M, Horne, C.R, Dobson, R.C.J.
Deposit date:2023-08-23
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structure of isomerase domain of the nan-regulatory protein (NanR) from Streptococcus pneumoniae
To Be Published
8TXH
DownloadVisualize
BU of 8txh by Molmil
Crystal structure of KRAS G12D in complex with GDP and compound 14
Descriptor: (4P)-2-amino-4-{4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-6-(trifluoromethyl)quinazolin-7-yl}-7-fluoro-1-benzothiophene-3-carbonitrile, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Chen, P, Irimia, A, Yang, Z.
Deposit date:2023-08-23
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure-Based Design and Synthesis of Potent and Selective KRAS G12D Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8TXG
DownloadVisualize
BU of 8txg by Molmil
Crystal structure of KRAS G12D in complex with GDP and compound 8
Descriptor: (4M)-4-(6-chloro-4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}quinazolin-7-yl)-7-fluoro-1,3-benzothiazol-2-amine, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Chen, P, Irimia, A, Yang, Z.
Deposit date:2023-08-23
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-Based Design and Synthesis of Potent and Selective KRAS G12D Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8TXF
DownloadVisualize
BU of 8txf by Molmil
AvrB bound with RIN4 C-NOI motif
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Avirulence protein B, ...
Authors:Peng, W, Orth, K.
Deposit date:2023-08-23
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4.
Sci Adv, 10, 2024
8TXE
DownloadVisualize
BU of 8txe by Molmil
Crystal structure of KRAS G12D in complex with GDP and compound 5
Descriptor: (6M)-6-(6-chloro-4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}quinazolin-7-yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Chen, P, Irimia, A, Yang, Z.
Deposit date:2023-08-23
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure-Based Design and Synthesis of Potent and Selective KRAS G12D Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8TX9
DownloadVisualize
BU of 8tx9 by Molmil
Nan Regulatory Protein (core isomerase domain) from Streptococcus pneumoniae
Descriptor: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose, MurR/RpiR family transcriptional regulator, SODIUM ION
Authors:Wood, D.M, Horne, C.R, Panjikar, S, Dobson, R.C.J.
Deposit date:2023-08-23
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure of isomerase domain of the nan-regulatory protein (NanR) from Streptococcus pneumoniae
To Be Published
8TX5
DownloadVisualize
BU of 8tx5 by Molmil
Crystal structure of an engineered variant of galactose oxidase, GOaseRd4BB, from Fusarium graminearum
Descriptor: COPPER (II) ION, GLYCEROL, Galactose oxidase
Authors:Selvaraj, B, Orth, P.
Deposit date:2023-08-22
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Development of a Biocatalytic Aerobic Oxidation for the Manufacturing Route to Islatravir
Chemrxiv, 2023
8TX0
DownloadVisualize
BU of 8tx0 by Molmil
IRAK4 in complex with compound
Descriptor: 1,2-ETHANEDIOL, Interleukin-1 receptor-associated kinase 4, SODIUM ION, ...
Authors:Metrick, C.M, Chodaparambil, J.V.
Deposit date:2023-08-21
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of BIO-8169─A Highly Potent, Selective, and Brain-Penetrant IRAK4 Inhibitor for the Treatment of Neuroinflammation.
J.Med.Chem., 67, 2024
8TWZ
DownloadVisualize
BU of 8twz by Molmil
ELIC with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG
Descriptor: 3-AMINOPROPANE, Erwinia chrysanthemi ligand-gated ion channel
Authors:Dalal, V, Arcario, M.J, Petroff II, J.T, Deitzen, N.M, Tan, B.K, Brannigan, G, Cheng, W.W.L.
Deposit date:2023-08-21
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Lipid nanodisc scaffold and size alter the structure of a pentameric ligand-gated ion channel.
Nat Commun, 15, 2024

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon