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3M93
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BU of 3m93 by Molmil
Complex crystal structure of Ascaris suum eIF4E-3 with m7G cap
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Eukaryotic translation initiation factor 4E-binding protein 1, Translation initiation factor 4E
Authors:Liu, W, Berkeley Structural Genomics Center (BSGC)
Deposit date:2010-03-19
Release date:2011-07-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for nematode eIF4E binding an m2,2,7G-Cap and its implications for translation initiation.
Nucleic Acids Res., 39, 2011
4UIK
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BU of 4uik by Molmil
crystal structure of quinine-dependent Fab 314.1
Descriptor: FAB 314.1
Authors:Zhu, J, Zhu, J, Bougie, D.W, Aster, R.H, Springer, T.A.
Deposit date:2015-03-30
Release date:2015-09-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for Quinine-Dependent Antibody Binding to Platelet Integrin Alphaiib Beta3
Blood, 126, 2015
4KSK
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BU of 4ksk by Molmil
Gumby/Fam105B in complex with ubiquitin
Descriptor: Polyubiquitin-C, Protein FAM105B, SULFATE ION
Authors:Ceccarelli, D.F, Juang, Y.-C, Sicheri, F.
Deposit date:2013-05-17
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.
Nature, 498, 2013
3MOC
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BU of 3moc by Molmil
Investigation of global and local effects of radiation damage on porcine pancreatic elastase. Eighth stage of radiation damage
Descriptor: Chymotrypsin-like elastase family member 1, SODIUM ION, SULFATE ION
Authors:Petrova, T, Ginell, S, Kim, Y, Joachimiak, G, Joachimiak, A.
Deposit date:2010-04-22
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:X-ray-induced deterioration of disulfide bridges at atomic resolution.
Acta Crystallogr.,Sect.D, 66, 2010
3DEA
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BU of 3dea by Molmil
Glomerella cingulata PETFP-cutinase complex
Descriptor: 1,1,1-trifluoro-3-[(2-phenylethyl)sulfanyl]propan-2-one, Cutinase
Authors:Nyon, M.P, Rice, D.W, Berrisford, J.M, Hounslow, A.M, Moir, A.J.G, Huang, H, Nathan, S, Mahadi, N.M, Farah Diba, A.B, Craven, C.J.
Deposit date:2008-06-09
Release date:2008-11-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Catalysis by Glomerella cingulata Cutinase Requires Conformational Cycling between the Active and Inactive States of Its Catalytic Triad
J.Mol.Biol., 385, 2009
3DDY
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BU of 3ddy by Molmil
Structure of lumazine protein, an optical transponder of luminescent bacteria
Descriptor: Lumazine protein, RIBOFLAVIN
Authors:Chatwell, L, Illarionova, V, Illarionov, B, Skerra, A, Bacher, A, Fischer, M.
Deposit date:2008-06-07
Release date:2008-07-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of lumazine protein, an optical transponder of luminescent bacteria.
J.Mol.Biol., 382, 2008
6Q05
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BU of 6q05 by Molmil
MERS-CoV S structure in complex with sialyl-lewisX
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FOLIC ACID, ...
Authors:Park, Y.J, Walls, A.C, Wang, Z, Sauer, M, Li, W, Tortorici, M.A, Bosch, B.J, DiMaio, F.D, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-08-01
Release date:2019-12-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structures of MERS-CoV spike glycoprotein in complex with sialoside attachment receptors.
Nat.Struct.Mol.Biol., 26, 2019
3MP3
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BU of 3mp3 by Molmil
Crystal Structure of Human Lyase in complex with inhibitor HG-CoA
Descriptor: (3R,5S,9R,21S)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9,21-tetrahydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphatricosan-23-oic acid 3,5-dioxide, 3-HYDROXYPENTANEDIOIC ACID, Hydroxymethylglutaryl-CoA lyase, ...
Authors:Fu, Z, Runquist, J.A, Montgomery, C, Miziorko, H.M, Kim, J.-J.P.
Deposit date:2010-04-24
Release date:2010-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Functional insights into human HMG-CoA lyase from structures of Acyl-CoA-containing ternary complexes.
J.Biol.Chem., 285, 2010
3M9A
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BU of 3m9a by Molmil
Protein structure of type III plasmid segregation TubR
Descriptor: Putative DNA-binding protein
Authors:Schumacher, M.A, Ni, L.
Deposit date:2010-03-21
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:From the Cover: Plasmid protein TubR uses a distinct mode of HTH-DNA binding and recruits the prokaryotic tubulin homolog TubZ to effect DNA partition.
Proc.Natl.Acad.Sci.USA, 107, 2010
3DEQ
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BU of 3deq by Molmil
Crystal structure of dipeptide epimerase from Thermotoga maritima complexed with L-Ala-L-Leu dipeptide
Descriptor: ALANINE, LEUCINE, MAGNESIUM ION, ...
Authors:Fedorov, A.A, Fedorov, E.V, Imker, H.J, Gerlt, J.A, Almo, S.C.
Deposit date:2008-06-10
Release date:2008-11-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening.
Structure, 16, 2008
4KOW
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BU of 4kow by Molmil
Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with Cefoxitin
Descriptor: 1,2-ETHANEDIOL, CEFOXITIN, SULFATE ION, ...
Authors:Majorek, K.A, Porebski, P.J, Chruszcz, M, Grabowski, M, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-05-12
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural, Functional, and Inhibition Studies of a Gcn5-related N-Acetyltransferase (GNAT) Superfamily Protein PA4794: A NEW C-TERMINAL LYSINE PROTEIN ACETYLTRANSFERASE FROM PSEUDOMONAS AERUGINOSA.
J.Biol.Chem., 288, 2013
3DG4
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BU of 3dg4 by Molmil
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complex
Descriptor: 16S Ribosomal RNA from E. coli, 23S RibosomaL RNA from E. coli
Authors:Gao, H, LeBarron, J, Frank, J.
Deposit date:2008-06-12
Release date:2009-02-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:Ribosomal Dynamics: Intrinsic Instability of a Moleculaar Machine
To be published
4K3E
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BU of 4k3e by Molmil
Crystal structure of bovine antibody BLV5B8 with ultralong CDR H3
Descriptor: BOVINE ANTIBODY WITH ULTRALONG CDR H3, HEAVY CHAIN, LIGHT CHAIN, ...
Authors:Ekiert, D.C, Wang, F, Wilson, I.A.
Deposit date:2013-04-10
Release date:2013-06-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reshaping antibody diversity.
Cell(Cambridge,Mass.), 153, 2013
3DGS
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BU of 3dgs by Molmil
Changing the determinants of protein stability from covalent to non-covalent interactions by in-vitro evolution: a structural and energetic analysis
Descriptor: Coat protein A
Authors:Jakob, R.P, Kather, I, Dobbek, H, Schmid, F.X.
Deposit date:2008-06-16
Release date:2008-07-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Changing the determinants of protein stability from covalent to non-covalent interactions by in vitro evolution: a structural and energetic analysis.
J.Mol.Biol., 381, 2008
4UHU
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BU of 4uhu by Molmil
W229D mutant of the last common ancestor of Gram-negative bacteria (GNCA) beta-lactamase class A
Descriptor: ACETATE ION, FORMIC ACID, GNCA LACTAMASE W229D
Authors:Gavira, J.A, Risso, V.A, Martinez-Rodriguez, S, Sanchez-Ruiz, J.M.
Deposit date:2015-03-25
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.305 Å)
Cite:De novo active sites for resurrected Precambrian enzymes.
Nat Commun, 8, 2017
3MS4
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BU of 3ms4 by Molmil
Glycogen phosphorylase complexed with 4-trifluoromethylbenzaldehyde-4-(beta-D-glucopyranosyl)-thiosemicarbazone
Descriptor: Glycogen phosphorylase, muscle form, N-{[(2E)-2-{[4-(trifluoromethyl)phenyl]methylidene}hydrazino]carbonothioyl}-beta-D-glucopyranosylamine
Authors:Alexacou, K.-M.
Deposit date:2010-04-29
Release date:2011-01-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The binding of beta-D-glucopyranosyl-thiosemicarbazone derivatives to glycogen phosphorylase: a new class of inhibitors
Bioorg.Med.Chem., 18, 2010
3MFY
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BU of 3mfy by Molmil
Structural characterization of the subunit A mutant F236A of the A-ATP synthase from Pyrococcus horikoshii
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
Authors:Balakrishna, A.M, Kumar, A, Manimekali, M.S.S, Jeyakanthan, J, Gruber, G.
Deposit date:2010-04-05
Release date:2010-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding.
J.Mol.Biol., 401, 2010
4UJB
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BU of 4ujb by Molmil
Protein Kinase A in complex with an Inhibitor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 7-[(3S,4R)-4-(3-fluorophenyl)carbonylpyrrolidin-3-yl]-3H-quinazolin-4-one, CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA, ...
Authors:Alam, K.A, Engh, R.A.
Deposit date:2015-04-09
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Addressing the Glycine-Rich Loop of Protein Kinases by a Multi-Facetted Interaction Network: Inhibition of Pka and a Pkb Mimic.
Chemistry, 22, 2016
4KS7
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BU of 4ks7 by Molmil
PAK6 kinase domain in complex with PF-3758309
Descriptor: ISOPROPYL ALCOHOL, PF-3758309, Serine/threonine-protein kinase PAK 6
Authors:Gao, J, Boggon, T.J.
Deposit date:2013-05-17
Release date:2013-09-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Substrate and Inhibitor Specificity of the Type II p21-Activated Kinase, PAK6.
Plos One, 8, 2013
3MSK
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BU of 3msk by Molmil
Fragment Based Discovery and Optimisation of BACE-1 Inhibitors
Descriptor: 4-(2-amino-5-chloro-1H-benzimidazol-1-yl)-N-cyclohexyl-N-methylbutanamide, Beta-secretase 1, GLYCEROL, ...
Authors:Smith, M.A, Madden, J.M, Barker, J, Godemann, R, Kraemer, J, Hallett, D.
Deposit date:2010-04-29
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Fragment-based discovery and optimization of BACE1 inhibitors.
Bioorg.Med.Chem.Lett., 20, 2010
3DHX
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BU of 3dhx by Molmil
Crystal structure of isolated C2 domain of the methionine uptake transporter
Descriptor: IODIDE ION, Methionine import ATP-binding protein metN
Authors:Johnson, E, Kaiser, J.T, Lee, A.T, Rees, D.C.
Deposit date:2008-06-18
Release date:2008-08-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The high-affinity E. coli methionine ABC transporter: structure and allosteric regulation.
Science, 321, 2008
4K5R
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BU of 4k5r by Molmil
The 2.0 angstrom crystal structure of MTMOIV, a baeyer-villiger monooxygenase from the mithramycin biosynthetic pathway in streptomyces argillaceus.
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Oxygenase
Authors:Noinaj, N, Bosserman, M.A, Rohr, J, Buchanan, S.K.
Deposit date:2013-04-15
Release date:2013-10-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular Insight into Substrate Recognition and Catalysis of Baeyer-Villiger Monooxygenase MtmOIV, the Key Frame-Modifying Enzyme in the Biosynthesis of Anticancer Agent Mithramycin.
Acs Chem.Biol., 8, 2013
3DFC
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BU of 3dfc by Molmil
Crystal structure of a glycine-rich loop mutant of the death associated protein kinase catalytic domain with AMPPNP
Descriptor: Death-associated protein kinase 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:McNamara, L.K, Schavocky, J.P, Watterson, D.M, Brunzelle, J.S.
Deposit date:2008-06-11
Release date:2009-05-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High resolution crystal structures of the death associated protein kinase catalytic domain with a key point mutation in the glycine-rich loop
To be Published
4UN8
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BU of 4un8 by Molmil
THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MN (STATE 2)
Descriptor: 25MER, HOMING ENDONUCLEASE I-DMOI, MANGANESE (II) ION
Authors:Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G.
Deposit date:2014-05-26
Release date:2014-12-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol., 22, 2015
4KSL
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BU of 4ksl by Molmil
Gumby/Fam105B in complex with linear di-ubiquitin
Descriptor: Polyubiquitin-C, Protein FAM105B
Authors:Juang, Y.-C, Ceccarelli, D.F, Sicheri, F.
Deposit date:2013-05-17
Release date:2013-06-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.
Nature, 498, 2013

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