Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3MYM
DownloadVisualize
BU of 3mym by Molmil
Mutation of Methionine-86 in Dehaloperoxidase-hemoglobin: Effects of the Asp-His-Fe Triad in a 3/3 Globin
Descriptor: CYANIDE ION, Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:de Serrano, V.S, D'Antonio, E.L, Franzen, S, Bowden, E.F.
Deposit date:2010-05-10
Release date:2011-04-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.
Biochemistry, 50, 2011
7DGJ
DownloadVisualize
BU of 7dgj by Molmil
The dimeric structure of K78H/G80A/H82A myoglobin
Descriptor: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2020-11-12
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGM
DownloadVisualize
BU of 7dgm by Molmil
The dimeric structure of K79H/G80A/H81A myoglobin
Descriptor: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2020-11-12
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGL
DownloadVisualize
BU of 7dgl by Molmil
The Ni-bound dimeric structure of K78H/G80A/H82A myoglobin
Descriptor: Myoglobin, NICKEL (II) ION, OXYGEN ATOM, ...
Authors:Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2020-11-12
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGO
DownloadVisualize
BU of 7dgo by Molmil
The Zn-bound dimeric structure of K79H/G80A/H81A myoglobin
Descriptor: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2020-11-12
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGK
DownloadVisualize
BU of 7dgk by Molmil
The Co-bound dimeric structure of K78H/G80A/H82A myoglobin
Descriptor: COBALT (II) ION, Myoglobin, OXYGEN ATOM, ...
Authors:Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2020-11-12
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
4CXL
DownloadVisualize
BU of 4cxl by Molmil
Human insulin analogue (D-ProB8)-insulin
Descriptor: CHLORIDE ION, INSULIN A CHAIN, INSULIN B CHAIN
Authors:Kosinova, L, Veverka, V, Novotna, P, Collinsova, M, Urbanova, M, Jiracek, J, Moody, N.R, Turkenburg, J.P, Brzozowski, A.M, Zakova, L.
Deposit date:2014-04-07
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An Insight Into Structural and Biological Relevance of the T/R Transition of the B-Chain N-Terminus in Human Insulin.
Biochemistry, 53, 2014
4CJ7
DownloadVisualize
BU of 4cj7 by Molmil
Structure of Crenactin, an archeal actin-like protein
Descriptor: ACTIN/ACTIN FAMILY PROTEIN, ADENOSINE-5'-DIPHOSPHATE
Authors:Izore, T, Duman, R.E, Kureisaite-Ciziene, D, Lowe, J.
Deposit date:2013-12-19
Release date:2014-01-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crenactin from Pyrobaculum Calidifontis is Closely Related to Actin in Structure and Forms Steep Helical Filaments.
FEBS Lett., 588, 2014
4D6Z
DownloadVisualize
BU of 4d6z by Molmil
Cytochrome P450 3A4 bound to imidazole and an inhibitor
Descriptor: CYTOCHROME P450 3A4, GLYCEROL, IMIDAZOLE, ...
Authors:Sevrioukova, I, Poulos, T.
Deposit date:2014-11-19
Release date:2015-09-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure-Based Inhibitor Design for Evaluation of a Cyp3A4 Pharmacophore Model.
J.Med.Chem., 59, 2016
4D7D
DownloadVisualize
BU of 4d7d by Molmil
Cytochrome P450 3A4 bound to an inhibitor
Descriptor: CYTOCHROME P450 3A4, PROTOPORPHYRIN IX CONTAINING FE, tert-butyl [(2S)-1-(1H-indol-3-yl)-3-({3-oxo-3-[(pyridin-3-ylmethyl)amino]propyl}sulfanyl)propan-2-yl]carbamate
Authors:Sevrioukova, I, Poulos, T.
Deposit date:2014-11-22
Release date:2015-09-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structure-Based Inhibitor Design for Evaluation of a Cyp3A4 Pharmacophore Model.
J.Med.Chem., 59, 2016
4D7T
DownloadVisualize
BU of 4d7t by Molmil
Structure of the SthK Carboxy-Terminal Region in complex with cAMP
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, STHK_CNBD_CAMP
Authors:Kesters, D, Brams, M, Nys, M, Wijckmans, E, Spurny, R, Voets, T, Tytgat, J, Ulens, C.
Deposit date:2014-11-27
Release date:2015-02-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.582 Å)
Cite:Structure of the SthK Carboxy-Terminal Region Reveals a Gating Mechanism for Cyclic Nucleotide-Modulated Ion Channels.
Plos One, 10, 2015
3N84
DownloadVisualize
BU of 3n84 by Molmil
Crystal Structure of the Grb2 SH2 Domain in Complex with a 23-Membered Macrocyclic Ligand Having the Sequence pYVNVP
Descriptor: 23-membered peptide-like macrocyclic ligand, CHLORIDE ION, GLYCEROL, ...
Authors:Clements, J.H, Martin, S.F.
Deposit date:2010-05-27
Release date:2011-01-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Thermodynamic and Structural Effects of Macrocyclization as a Constraining Method in Protein-Ligand Interactions.
ACS MED.CHEM.LETT., 1, 2010
3MXE
DownloadVisualize
BU of 3mxe by Molmil
Crystal structure of HIV-1 protease inhibitor, KC32 complexed with wild-type protease
Descriptor: (5S)-N-{(1S,2R)-3-[(1,3-benzothiazol-6-ylsulfonyl)(2-methylpropyl)amino]-1-benzyl-2-hydroxypropyl}-2-oxo-3-[2-(trifluoromethyl)phenyl]-1,3-oxazolidine-5-carboxamide, ACETATE ION, HIV-1 protease, ...
Authors:Nalam, M.N.L, Schiffer, C.A.
Deposit date:2010-05-07
Release date:2010-11-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-Based Design, Synthesis, and Structure-Activity Relationship Studies of HIV-1 Protease Inhibitors Incorporating Phenyloxazolidinones.
J.Med.Chem., 53, 2010
4CN8
DownloadVisualize
BU of 4cn8 by Molmil
Structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus
Descriptor: 1,2-ETHANEDIOL, PROXIMAL THREAD MATRIX PROTEIN 1, SULFATE ION
Authors:Gertz, M, Suhre, M.H, Scheibel, T, Steegborn, C.
Deposit date:2014-01-21
Release date:2014-03-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and Functional Features of a Collagen-Binding Matrix Protein from the Mussel Byssus.
Nat.Commun., 5, 2014
6EC0
DownloadVisualize
BU of 6ec0 by Molmil
Crystal structure of the wild-type heterocomplex between coil 1B domains of human intermediate filament proteins keratin 1 (KRT1) and keratin 10 (KRT10)
Descriptor: CADMIUM ION, COBALT (II) ION, Keratin 1, ...
Authors:Eldirany, S.A, Lomakin, I.B, Bunick, C.G.
Deposit date:2018-08-07
Release date:2019-05-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.983 Å)
Cite:Human keratin 1/10-1B tetramer structures reveal a knob-pocket mechanism in intermediate filament assembly.
Embo J., 38, 2019
4D6Y
DownloadVisualize
BU of 4d6y by Molmil
Crystal structure of the receiver domain of NtrX from Brucella abortus in complex with beryllofluoride and magnesium
Descriptor: BACTERIAL REGULATORY, FIS FAMILY PROTEIN, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Otero, L.H, Fernandez, I, Carrica, M.C, Klinke, S, Goldbaum, F.A.
Deposit date:2014-11-18
Release date:2015-07-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Snapshots of Conformational Changes Shed Light Into the Ntrx Receiver Domain Signal Transduction Mechanism
J.Mol.Biol., 427, 2015
4D75
DownloadVisualize
BU of 4d75 by Molmil
Cytochrome P450 3A4 bound to an inhibitor
Descriptor: CYTOCHROME P450 3A4, PROTOPORPHYRIN IX CONTAINING FE, tert-butyl {6-oxo-6-[(pyridin-3-ylmethyl)amino]hexyl}carbamate
Authors:Sevrioukova, I, Poulos, T.
Deposit date:2014-11-19
Release date:2015-09-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure-Based Inhibitor Design for Evaluation of a Cyp3A4 Pharmacophore Model.
J.Med.Chem., 59, 2016
3MYY
DownloadVisualize
BU of 3myy by Molmil
Structure of E. Coli CheY mutant A113P bound to Beryllium fluoride
Descriptor: BERYLLIUM TRIFLUORIDE ION, Chemotaxis protein cheY, GLYCEROL, ...
Authors:Immormino, R.M, McDonald, L.R, Bourret, R.B.
Deposit date:2010-05-11
Release date:2011-05-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Activation of CheY by Mutation at an allosteric site
To be Published
3MTY
DownloadVisualize
BU of 3mty by Molmil
Comparison of the character and the speed of X-ray-induced structural changes of porcine pancreatic elastase at two temperatures, 100 and 15K. The data set was collected from region A of the crystal. First step of radiation damage
Descriptor: Chymotrypsin-like elastase family member 1, SODIUM ION, SULFATE ION
Authors:Petrova, T, Ginell, S, Mitschler, A, Cousido-Siah, A, Hazemann, I, Podjarny, A, Joachimiak, A.
Deposit date:2010-05-01
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.101 Å)
Cite:X-ray-induced deterioration of disulfide bridges at atomic resolution.
Acta Crystallogr.,Sect.D, 66, 2010
3MUR
DownloadVisualize
BU of 3mur by Molmil
Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), C92U mutant c-di-GMP riboswitch, MAGNESIUM ION, ...
Authors:Strobel, S.A, Smith, K.D.
Deposit date:2010-05-03
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
6E5E
DownloadVisualize
BU of 6e5e by Molmil
Crystal structure of the apo domain-swapped dimer Q108K:T51D mutant of human cellular retinol binding protein II
Descriptor: ACETATE ION, Retinol-binding protein 2
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2018-07-20
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.696 Å)
Cite:Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches.
J.Am.Chem.Soc., 141, 2019
3MZQ
DownloadVisualize
BU of 3mzq by Molmil
RNase crystals grown by the hanging drop method
Descriptor: CHLORIDE ION, Ribonuclease pancreatic, SULFATE ION
Authors:Mathews, I.I.
Deposit date:2010-05-12
Release date:2011-05-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Diffraction study of protein crystals grown in cryoloops and micromounts.
J.Appl.Crystallogr., 43, 2010
6E5Q
DownloadVisualize
BU of 6e5q by Molmil
Crystal structure of the apo domain-swapped dimer Q108K:T51D:A28H mutant of human Cellular Retinol Binding Protein II
Descriptor: ACETATE ION, Retinol-binding protein 2
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2018-07-21
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches.
J.Am.Chem.Soc., 141, 2019
7DD1
DownloadVisualize
BU of 7dd1 by Molmil
Crystal structure of SRPK1 in complex with a peptide inhibitor
Descriptor: ARG-GLU-ARG-ALA-ARG-THR-ARG, SRSF protein kinase 1,SRSF protein kinase 1
Authors:Li, Q.Y, Yung, K.W.Y, Ngo, J.C.K.
Deposit date:2020-10-27
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Protein-Protein Interaction Inhibitor of SRPKs Alters the Splicing Isoforms of VEGF and Inhibits Angiogenesis.
Iscience, 24, 2021
3MWI
DownloadVisualize
BU of 3mwi by Molmil
The complex crystal Structure of Urokianse and 5-nitro-1H-indole-2-amidine
Descriptor: 5-nitro-1H-indole-2-carboximidamide, SULFATE ION, Urokinase-type plasminogen activator
Authors:Jiang, L.G, Yu, H.Y, Yuan, C, Huang, Z.X, Huang, M.D.
Deposit date:2010-05-06
Release date:2011-06-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:The complex crystal Structure of Urokianse and 5-nitro-1H-indole-2-amidine
To be Published

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon