PDB: 45176 resultsInfo pagesStatus searchChemie searchBIRD

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8IR3	human nuclear pre-60S ribosomal particle - State B' Descriptor: 28S rRNA, 5.8S rRNA, 5S RNA, ... Authors: Zhang, Y, Gao, N. Deposit date: 2023-03-17 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
8I5C	Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK) Descriptor: Beta-2-microglobulin, MHC class I antigen (Fragment), TCR alpha chain, ... Authors: Lu, D, Chen, Y, Jiang, M, Tan, S.G, Chai, Y, Gao, G.F. Deposit date: 2023-01-24 Release date: 2023-08-23 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (3.34 Å) Cite: Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK) Nat Commun, 2023
8IDT	human nuclear pre-60S ribosomal particle - State G Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Zhang, Y, Gao, N. Deposit date: 2023-02-14 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
4GGF	Crystal structure of Mn2+ bound calprotectin Descriptor: CALCIUM ION, GLYCEROL, MANGANESE (II) ION, ... Authors: Damo, S.M, Fritz, G. Deposit date: 2012-08-06 Release date: 2013-02-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Molecular basis for manganese sequestration by calprotectin and roles in the innate immune response to invading bacterial pathogens. Proc.Natl.Acad.Sci.USA, 110, 2013
3D4V	Crystal Structure of an AlkA Host/Guest Complex N7MethylGuanine:Cytosine Base Pair Descriptor: 5'-D(*DGP*DAP*DCP*DAP*DTP*DGP*DAP*(FMG)P*DTP*DGP*DCP*DC)-3', 5'-D(*DGP*DGP*DCP*DAP*DCP*DTP*DCP*DAP*DTP*DGP*DTP*DC)-3', DNA-3-methyladenine glycosylase 2 Authors: Lee, S, Bowman, B.R, Wang, S, Verdine, G.L. Deposit date: 2008-05-15 Release date: 2008-09-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Synthesis and structure of duplex DNA containing the genotoxic nucleobase lesion N7-methylguanine. J.Am.Chem.Soc., 130, 2008
8IR1	human nuclear pre-60S ribosomal particle - State A Descriptor: 28S rRNA, 5.8S rRMA, 5S RNA, ... Authors: Zhang, Y, Gao, N. Deposit date: 2023-03-17 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
8IJW	Cryo-EM structure of the gastric proton pump with bound DQ-06 Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ... Authors: Abe, K, Yokoshima, S, Yoshimori, A. Deposit date: 2023-02-28 Release date: 2023-08-30 Last modified: 2023-10-04 Method: ELECTRON MICROSCOPY (2.19 Å) Cite: Deep learning driven de novo drug design based on gastric proton pump structures. Commun Biol, 6, 2023
8IJX	Cryo-EM structure of the gastric proton pump with bound DQ-18 Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-[4-[(5-chloranyl-2-phenylmethoxy-phenyl)methoxy]phenyl]-N-methyl-methanamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Abe, K, Yokoshima, S, Yoshimori, A. Deposit date: 2023-02-28 Release date: 2023-08-30 Last modified: 2023-10-04 Method: ELECTRON MICROSCOPY (2.08 Å) Cite: Deep learning driven de novo drug design based on gastric proton pump structures. Commun Biol, 6, 2023
8IMY	Cryo-EM structure of GPI-T (inactive mutant) with GPI and proULBP2, a proprotein substrate Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Li, T, Xu, Y, Qu, Q, Li, D. Deposit date: 2023-03-07 Release date: 2023-08-16 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: Structures of liganded glycosylphosphatidylinositol transamidase illuminate GPI-AP biogenesis. Nat Commun, 14, 2023
8IQ0	Crystal structure of hydrogen sulfide-bound superoxide dismutase in oxidized state Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, COPPER (II) ION, ... Authors: Zhou, J.H, Huang, W.X, Cheng, R.X, Zhang, P.J, Zhu, Y.C. Deposit date: 2023-03-15 Release date: 2023-09-06 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Hydrogen sulfide functions as a micro-modulator bound at the copper active site of Cu/Zn-SOD to regulate the catalytic activity of the enzyme. Cell Rep, 42, 2023
8IJV	Cryo-EM structure of the gastric proton pump with bound DQ-02 Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[[5-chloranyl-2-(4-chlorophenyl)phenyl]methoxy]-N-methyl-but-2-yn-1-amine, ... Authors: Abe, K, Yokoshima, S, Yoshimori, A. Deposit date: 2023-02-28 Release date: 2023-08-30 Last modified: 2023-10-04 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Deep learning driven de novo drug design based on gastric proton pump structures. Commun Biol, 6, 2023
8IFY	Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 spike protein in complex with white-tailed deer ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ... Authors: Han, P, Meng, Y.M, Qi, J.X. Deposit date: 2023-02-20 Release date: 2023-08-30 Last modified: 2023-10-25 Method: ELECTRON MICROSCOPY (2.55 Å) Cite: Structural basis of white-tailed deer, Odocoileus virginianus , ACE2 recognizing all the SARS-CoV-2 variants of concern with high affinity. J.Virol., 97, 2023
8IQ1	Crystal structure of hydrogen sulfide-bound superoxide dismutase in reduced state Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, COPPER (II) ION, ... Authors: Zhou, J.H, Huang, W.X, Cheng, R.X, Zhang, P.J, Zhu, Y.C. Deposit date: 2023-03-15 Release date: 2023-09-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Hydrogen sulfide functions as a micro-modulator bound at the copper active site of Cu/Zn-SOD to regulate the catalytic activity of the enzyme. Cell Rep, 42, 2023
3CX5	Structure of complex III with bound cytochrome c in reduced state and definition of a minimal core interface for electron transfer. Descriptor: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate, (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate, ... Authors: Solmaz, S.R.N, Hunte, C. Deposit date: 2008-04-23 Release date: 2008-05-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of complex III with bound cytochrome c in reduced state and definition of a minimal core interface for electron transfer. J.Biol.Chem., 283, 2008
8I98	Crystal structure of TePixD Y8F Descriptor: FLAVIN MONONUCLEOTIDE, Tll0078 protein Authors: Hu, R, Lin, L, Lu, Q. Deposit date: 2023-02-06 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Structure of the BLUF Protein TePixD Y8F Mutant Progress in Biochemistry and Biophysics, 2023
8I91	ACE2-SIT1 complex bound with proline Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... Authors: Li, Y.N, Zhang, Y.Y, Shen, Y.P, Yan, R.H. Deposit date: 2023-02-06 Release date: 2023-09-27 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural insight into the substrate recognition and transport mechanism of amino acid transporter complex ACE2-B 0 AT1 and ACE2-SIT1. Cell Discov, 9, 2023
8I4T	Structure of the asymmetric unit of SFTSV virion Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein Authors: Du, S, Peng, R, Qi, J, Li, C. Deposit date: 2023-01-21 Release date: 2023-09-13 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (5.2 Å) Cite: Cryo-EM structure of severe fever with thrombocytopenia syndrome virus. Nat Commun, 14, 2023
6ED9	NMR structure for Sp1 transcription factor duplex 5'-d(TGGGCGGGA) Descriptor: DNA (5'-D(*TP*CP*CP*CP*GP*CP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*A)-3') Authors: Davis, E.V, Hennig, M, Arya, D.P. Deposit date: 2018-08-09 Release date: 2019-08-14 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: An NMR Structure Determination and Analysis of Four Sp1 Consensus Sequences To Be Published
8IMK	D3-D4, D1-D2, D'3-D'4, D'1-D'2 cylinder in cyanobacterial phycobilisome from Anthocerotibacter panamensis (Cluster C) Descriptor: ApcA1, ApcA2, ApcB1, ... Authors: Wang, C.H, Yang, C.H, Wu, H.Y, Jiang, H.W, Ho, M.C, Ho, M.Y. Deposit date: 2023-03-07 Release date: 2023-10-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (2.48 Å) Cite: A structure of the relict phycobilisome from a thylakoid-free cyanobacterium. Nat Commun, 14, 2023
8IMJ	A'1-A'2, A'3-A'4, B1-B2, C1-C2 cylinder in cyanobacterial phycobilisome from Anthocerotibacter panamensis (Cluster B) Descriptor: ApcA2, ApcB2, ApcB3, ... Authors: Wang, C.H, Yang, C.H, Wu, H.Y, Jiang, H.W, Ho, M.C, Ho, M.Y. Deposit date: 2023-03-07 Release date: 2023-10-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: A structure of the relict phycobilisome from a thylakoid-free cyanobacterium. Nat Commun, 14, 2023
3DBY	Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target) Descriptor: 1,2-ETHANEDIOL, FE (III) ION, uncharacterized protein Authors: Ramagopal, U.A, Bonanno, J.B, Ozyurt, S, Freeman, J, Wasserman, S, Hu, S, Groshong, C, Rodgers, L, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2008-06-02 Release date: 2008-07-29 Last modified: 2021-02-10 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of uncharacterized protein from Bacillus cereus G9241 To be published
8IMI	A1-A2, A3-A4, B'1-B'2, C'1-C'2 cylinder in cyanobacterial phycobilisome from Anthocerotibacter panamensis (Cluster A) Descriptor: ApcA2, ApcB2, ApcB3, ... Authors: Wang, C.H, Yang, C.H, Wu, H.Y, Jiang, H.W, Ho, M.C, Ho, M.Y. Deposit date: 2023-03-07 Release date: 2023-10-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: A structure of the relict phycobilisome from a thylakoid-free cyanobacterium. Nat Commun, 14, 2023
8IML	Rs2I-Rs2II, Rs1I-Rs1II, RbI-RbII cylinder in cyanobacterial phycobilisome from Anthocerotibacter panamensis (Cluster D) Descriptor: CpcA, CpcB, CpcD, ... Authors: Wang, C.H, Yang, C.H, Wu, H.Y, Jiang, H.W, Ho, M.C, Ho, M.Y. Deposit date: 2023-03-07 Release date: 2023-10-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (2.74 Å) Cite: A structure of the relict phycobilisome from a thylakoid-free cyanobacterium. Nat Commun, 14, 2023
8IMN	Rt1I-Rt1II, Rt2'I-Rt2'II, Rt3I-Rt3II cylinder in cyanobacterial phycobilisome from Anthocerotibacter panamensis (Cluster F) Descriptor: CpcA, CpcB, CpcD, ... Authors: Wang, C.H, Yang, C.H, Wu, H.Y, Jiang, H.W, Ho, M.C, Ho, M.Y. Deposit date: 2023-03-07 Release date: 2023-10-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: A structure of the relict phycobilisome from a thylakoid-free cyanobacterium. Nat Commun, 14, 2023
8I7O	In situ structure of axonemal doublet microtubules in mouse sperm with 16-nm repeat Descriptor: Cilia and flagella-associated protein 77, Cilia- and flagella-associated protein 20, Cilia- and flagella-associated protein 276, ... Authors: Zhu, Y, Yin, G.L, Tai, L.H, Sun, F. Deposit date: 2023-02-01 Release date: 2023-10-11 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: In-cell structural insight into the stability of sperm microtubule doublet. Cell Discov, 9, 2023

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