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4MO3
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Crystal Structure of Porcine C2 Domain of Blood Coagulation Factor VIII
Descriptor: Coagulation factor VIII, GLYCEROL
Authors:Spiegel, P.C, Brison, C.
Deposit date:2013-09-11
Release date:2013-11-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal Structure of Porcine C2 Domain of Blood Coagulation Factor VIII (FoldIt Target)
To be Published
4KI5
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BU of 4ki5 by Molmil
Cystal structure of human factor VIII C2 domain in a ternary complex with murine inhbitory antibodies 3E6 and G99
Descriptor: Coagulation factor VIII, MURINE MONOCLONAL 3E6 FAB HEAVY CHAIN, MURINE MONOCLONAL 3E6 FAB LIGHT CHAIN, ...
Authors:Walter, J.D, Meeks, S.L, Healey, J.F, Lollar, P, Spiegel, P.C.
Deposit date:2013-05-01
Release date:2014-01-15
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structure of the factor VIII C2 domain in a ternary complex with 2 inhibitor antibodies reveals classical and nonclassical epitopes.
Blood, 122, 2013
4OUE
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BU of 4oue by Molmil
Crystal structure of an a-L-Fucosidase GH29 from Bacteroides thetaiotaomicron (BT2192) in complex with IPTG
Descriptor: 1-methylethyl 1-thio-beta-D-galactopyranoside, GLYCEROL, Putative lipoprotein
Authors:Lafite, P, Daniellou, R, Guillotin, L.
Deposit date:2014-02-16
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Unraveling the Substrate Recognition Mechanism and Specificity of the Unusual Glycosyl Hydrolase Family 29 BT2192 from Bacteroides thetaiotaomicron.
Biochemistry, 53, 2014
4OZO
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BU of 4ozo by Molmil
Crystal structure of an a-L-fucosidase GH29 from Bacteroides thetaiotaomicron (BT2192) in complex with oNPTG
Descriptor: 2-nitrophenyl 1-thio-beta-D-galactopyranoside, GLYCEROL, Putative lipoprotein
Authors:Lafite, P, Daniellou, R, Guillotin, L.
Deposit date:2014-02-17
Release date:2014-03-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Unraveling the substrate recognition mechanism and specificity of the unusual glycosyl hydrolase family 29 BT2192 from Bacteroides thetaiotaomicron.
Biochemistry, 53, 2014
4LPL
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BU of 4lpl by Molmil
Structure of CBM32-1 from a family 31 glycoside hydrolase from Clostridium perfringens
Descriptor: CALCIUM ION, Glycosyl hydrolase, family 31/fibronectin type III domain protein, ...
Authors:Grondin, J.M, Duan, D, Heather, F.S, Spencer, C.A, Allingham, J.S, Smith, S.P.
Deposit date:2013-07-16
Release date:2014-07-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens.
Plos One, 12, 2017
4LQR
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BU of 4lqr by Molmil
Structure of CBM32-3 from a family 31 glycoside hydrolase from Clostridium perfringens
Descriptor: CALCIUM ION, Glycosyl hydrolase, family 31/fibronectin type III domain protein
Authors:Grondin, J.M, Furness, H.S, Duan, D, Spencer, C.A, Allingham, J.S, Smith, S.P.
Deposit date:2013-07-19
Release date:2014-07-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens.
Plos One, 12, 2017
4LKS
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BU of 4lks by Molmil
Structure of CBM32-3 from a family 31 glycoside hydrolase from Clostridium perfringens in complex with galactose
Descriptor: CALCIUM ION, Glycosyl hydrolase, family 31/fibronectin type III domain protein, ...
Authors:Grondin, J.M, Duan, D, Kirlin, A.C, Furness, H.S, Allingham, J.S, Smith, S.P.
Deposit date:2013-07-08
Release date:2014-12-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens.
Plos One, 12, 2017
4PT6
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BU of 4pt6 by Molmil
The discobody: an engineered discoidin domain from factor VIII that binds v 3 integrin with antibody-like affinities
Descriptor: Coagulation factor VIII
Authors:Kym, G, Shi, K, Kamajaya, A, Hamdouche, S, Kostecki, J.S, Wannier, T, Li, B, Nikolovski, P, Mayo, S.L.
Deposit date:2014-03-10
Release date:2015-04-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The discobody: an engineered discoidin domain from factor VIII that binds v 3 integrin with antibody-like affinities
To be Published
4QDQ
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BU of 4qdq by Molmil
Physical basis for Nrp2 ligand binding
Descriptor: GLYCEROL, Neuropilin-2, SULFATE ION
Authors:Parker, M.W, Vander Kooi, C.W.
Deposit date:2014-05-14
Release date:2015-04-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Basis for VEGF-C Binding to Neuropilin-2 and Sequestration by a Soluble Splice Form.
Structure, 23, 2015
4QDR
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BU of 4qdr by Molmil
Physical basis for Nrp2 ligand binding
Descriptor: Neuropilin-2
Authors:Parker, M.W, Vander Kooi, C.W.
Deposit date:2014-05-14
Release date:2015-04-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for VEGF-C Binding to Neuropilin-2 and Sequestration by a Soluble Splice Form.
Structure, 23, 2015
4QDS
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BU of 4qds by Molmil
Physical basis for Nrp2 ligand binding
Descriptor: ACETATE ION, GLYCEROL, Neuropilin-2
Authors:Parker, M.W, Vander Kooi, C.W.
Deposit date:2014-05-14
Release date:2015-04-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for VEGF-C Binding to Neuropilin-2 and Sequestration by a Soluble Splice Form.
Structure, 23, 2015
4P5Y
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BU of 4p5y by Molmil
Structure of CBM32-3 from a family 31 glycoside hydrolase from Clostridium perfringens in complex with N-acetylgalactosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, CALCIUM ION, Glycosyl hydrolase, ...
Authors:Grondin, J.M, Allingham, J.S, Boraston, A.B, Smith, S.P.
Deposit date:2014-03-04
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens.
PLoS ONE, 12, 2017
4RN5
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BU of 4rn5 by Molmil
B1 domain of human Neuropilin-1 with acetate ion in a ligand-binding site
Descriptor: ACETATE ION, GLYCEROL, Neuropilin-1, ...
Authors:Allerston, C.K, Yelland, T.S, Jarvis, A, Jenkins, K, Winfield, N, Cheng, L, Jia, H, Zachary, I, Selwood, D.L, Djordjevic, S.
Deposit date:2014-10-23
Release date:2015-10-28
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Conserved water molecules in a ligand-binding site of neuropilin-1
To be Published
4XZU
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BU of 4xzu by Molmil
Crystal Structure of the Human Factor VIII C2 Domain in Complex with Murine 3E6 Inhibitory Antibody
Descriptor: 3E6 antibody Fab heavy chain, 3E6 antibody Fab light chain, Coagulation factor VIII, ...
Authors:Spiegel, P.C, Wuerth, M.E.
Deposit date:2015-02-05
Release date:2015-12-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structure of the Human Factor VIII C2 Domain in Complex with the 3E6 Inhibitory Antibody.
Sci Rep, 5, 2015
4TXW
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BU of 4txw by Molmil
Crystal structure of CBM32-4 from the Clostridium perfringens NagH
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Hyaluronoglucosaminidase
Authors:Grondin, J.M, Ficko-Blean, E, Boraston, A.B, Smith, S.P.
Deposit date:2014-07-07
Release date:2015-12-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Solution Structure and Dynamics of Full-length GH84A, a multimodular B-N-acetylglucosaminidase from Clostridium perfringens
To Be Published
2RVA
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BU of 2rva by Molmil
Solution structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: Glucanase
Authors:Shinya, S, Nishimura, S, Fukamizo, T.
Deposit date:2015-05-13
Release date:2016-04-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.
Biochem.J., 473, 2016
2RV9
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BU of 2rv9 by Molmil
Solution structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: Glucanase
Authors:Shinya, S, Nishimura, S, Fukamizo, T.
Deposit date:2015-05-12
Release date:2016-04-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.
Biochem.J., 473, 2016
4ZXE
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BU of 4zxe by Molmil
X-ray crystal structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5.
Descriptor: 1,2-ETHANEDIOL, Glucanase/Chitosanase, SULFATE ION
Authors:Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
Deposit date:2015-05-20
Release date:2016-04-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZZ5
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BU of 4zz5 by Molmil
X-ray crystal structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: 1,2-ETHANEDIOL, Glucanase/chitosanase, SULFATE ION
Authors:Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
Deposit date:2015-05-22
Release date:2016-04-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZY9
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BU of 4zy9 by Molmil
X-ray crystal structure of selenomethionine-labelled V110M mutant of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: Glucanase/chitosanase
Authors:Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
Deposit date:2015-05-21
Release date:2016-04-13
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZZ8
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BU of 4zz8 by Molmil
X-ray crystal structure of chitosan-binding module 2 in complex with chitotriose derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: 1,2-ETHANEDIOL, 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose, Glucanase/chitosanase, ...
Authors:Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
Deposit date:2015-05-22
Release date:2016-04-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
3JD6
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BU of 3jd6 by Molmil
Double octamer structure of retinoschisin, a cell-cell adhesion protein of the retina
Descriptor: Retinoschisin
Authors:Tolun, G, Vijayasarathy, C, Huang, R, Zeng, Y, Li, Y, Steven, A.C, Sieving, P.A, Heymann, J.B.
Deposit date:2016-04-12
Release date:2016-05-11
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Paired octamer rings of retinoschisin suggest a junctional model for cell-cell adhesion in the retina.
Proc.Natl.Acad.Sci.USA, 113, 2016
5C7G
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BU of 5c7g by Molmil
Crystal Structure of the b1 Domain of Human Neuropilin-1 in complex with a bicine molecule
Descriptor: BICINE, Neuropilin-1, SODIUM ION
Authors:Didierjean, C, Jelsch, C.
Deposit date:2015-06-24
Release date:2016-07-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Design, synthesis and biological evaluation of new peptidomimetic compounds targeting NRP-1 receptor TO BE PUBLISHED
To Be Published
5DN2
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BU of 5dn2 by Molmil
Human NRP2 b1 domain in complex with the peptide corresponding to the C-terminus of VEGF-A
Descriptor: 1,4-DIETHYLENE DIOXIDE, GLYCEROL, Neuropilin-2, ...
Authors:Tsai, Y.C.I, Frankel, P, Fotinou, C, Rana, R, Zachary, I, Djordjevic, S.
Deposit date:2015-09-09
Release date:2016-07-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural studies of neuropilin-2 reveal a zinc ion binding site remote from the vascular endothelial growth factor binding pocket.
Febs J., 283, 2016
5K9H
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BU of 5k9h by Molmil
Crystal structure of a glycoside hydrolase 29 family member from an unknown rumen bacterium
Descriptor: 0940_GH29, GLYCEROL, SODIUM ION, ...
Authors:Summers, E.L, Arcus, V.L.
Deposit date:2016-05-31
Release date:2016-09-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.029 Å)
Cite:The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains.
Acta Crystallogr.,Sect.F, 72, 2016

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