PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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1MHK	Crystal Structure Analysis of a 26mer RNA molecule, representing a new RNA motif, the hook-turn Descriptor: BROMIDE ION, RNA 12-mer BCh12, RNA 14-mer BCh12 Authors: Szep, S, Wang, J, Moore, P.B. Deposit date: 2002-08-20 Release date: 2002-09-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The crystal structure of a 26-nucleotide RNA containing a hook-turn RNA, 9, 2003
2MFH	Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(36-44)/RsmE(dimer) 2:1 complex Descriptor: Carbon storage regulator homolog, RsmZ(36-44) RNA Authors: Duss, O, Diarra Dit Konte, N, Michel, E, Schubert, M, Allain, F.H.-T. Deposit date: 2013-10-11 Release date: 2014-02-26 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition. Nucleic Acids Res., 42, 2014
3HL2	The crystal structure of the human SepSecS-tRNASec complex Descriptor: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Monothiophosphate, O-phosphoseryl-tRNA(Sec) selenium transferase, ... Authors: Palioura, S, Steitz, T.A, Soll, D, Simonovic, M. Deposit date: 2009-05-26 Release date: 2009-10-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.81 Å) Cite: The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation. Science, 325, 2009
7F1M	Marburg virus nucleoprotein-RNA complex Descriptor: Nucleoprotein, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') Authors: Fujita, F.Y, Sugita, Y, Takamatsu, Y, Houri, K, Muramoto, Y, Nakano, M, Tsunoda, Y, Igarashi, M, Becker, S, Noda, T. Deposit date: 2021-06-09 Release date: 2022-03-09 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural insight into Marburg virus nucleoprotein-RNA complex formation. Nat Commun, 13, 2022
1U7X	crystal structure of a mutant M. jannashii tyrosyl-tRNA synthetase specific for O-methyl-tyrosine Descriptor: POTASSIUM ION, Tyrosyl-tRNA synthetase Authors: Zhang, Y, Wang, L, Schultz, P.G, Wilson, I.A. Deposit date: 2004-08-04 Release date: 2005-05-24 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine. Protein Sci., 14, 2005
4J0X	Structure of Rrp9 Descriptor: Ribosomal RNA-processing protein 9 Authors: Zhang, L, Lin, J, Ye, K. Deposit date: 2013-01-31 Release date: 2013-06-05 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.502 Å) Cite: Structural and functional analysis of the U3 snoRNA binding protein Rrp9. Rna, 19, 2013
5WQE	Crystal structure of Alicyclobacillus acidoterrestris C2c1 in complex with single-guide RNA at 3.1 Angstrom resolution Descriptor: CRISPR-associated endonuclease C2c1, RNA (60-MER) Authors: Liu, L, Wang, Y.L. Deposit date: 2016-11-26 Release date: 2017-01-25 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.126 Å) Cite: C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism Mol. Cell, 65, 2017
4J0W	Structure of U3-55K Descriptor: U3 small nucleolar RNA-interacting protein 2 Authors: Zhang, L, Lin, J, Ye, K. Deposit date: 2013-01-31 Release date: 2013-06-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and functional analysis of the U3 snoRNA binding protein Rrp9. Rna, 19, 2013
2L3J	The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific read out of the minor groove Descriptor: Double-stranded RNA-specific editase 1, RNA (71-MER) Authors: Stefl, R, Oberstrass, F.C, Allain, F.H.-T. Deposit date: 2010-09-14 Release date: 2010-10-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove. Cell(Cambridge,Mass.), 143, 2010
3G8A	T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoHcy in space group P61 Descriptor: Ribosomal RNA small subunit methyltransferase G, S-ADENOSYL-L-HOMOCYSTEINE Authors: Demirci, H, Gregory, S.T, Belardinelli, R, Gualerzi, C, Dahlberg, A.E, Jogl, G. Deposit date: 2009-02-11 Release date: 2009-06-30 Last modified: 2019-07-24 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural and functional studies of the Thermus thermophilus 16S rRNA methyltransferase RsmG Rna, 15, 2009
3G89	T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoMet and AMP in space group P61 Descriptor: ADENOSINE MONOPHOSPHATE, Ribosomal RNA small subunit methyltransferase G, S-ADENOSYLMETHIONINE Authors: Demirci, H, Gregory, S.T, Belardinelli, R, Gualerzi, C, Dahlberg, A.E, Jogl, G. Deposit date: 2009-02-11 Release date: 2009-06-30 Last modified: 2019-07-24 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and functional studies of the Thermus thermophilus 16S rRNA methyltransferase RsmG Rna, 15, 2009
1D87	CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES Descriptor: DNA/RNA (5'-R(*GP*)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3') Authors: Egli, M, Usman, N, Rich, A. Deposit date: 1992-08-28 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. Biochemistry, 32, 1993
3G8B	T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoMet in space group I222 Descriptor: Ribosomal RNA small subunit methyltransferase G, S-ADENOSYLMETHIONINE, SULFATE ION Authors: Demirci, H, Gregory, S.T, Belardinelli, R, Gualerzi, C, Dahlberg, A.E, Jogl, G. Deposit date: 2009-02-11 Release date: 2009-06-30 Last modified: 2019-07-24 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural and functional studies of the Thermus thermophilus 16S rRNA methyltransferase RsmG Rna, 15, 2009
3G88	T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoMet in space group P61 Descriptor: DI(HYDROXYETHYL)ETHER, Ribosomal RNA small subunit methyltransferase G, S-ADENOSYLMETHIONINE Authors: Demirci, H, Belardinelli, R, Gregory, S.T, Gualerzi, C, Dahlberg, A.E, Jogl, G. Deposit date: 2009-02-11 Release date: 2009-06-30 Last modified: 2019-07-24 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Structural and functional studies of the Thermus thermophilus 16S rRNA methyltransferase RsmG Rna, 15, 2009
1D88	CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES Descriptor: DNA/RNA (5'-D(*GP*CP*GP*TP*)-R(*AP*)-D(*TP*AP*CP*GP*C)-3') Authors: Egli, M, Usman, N, Rich, A. Deposit date: 1992-08-28 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. Biochemistry, 32, 1993
1EMI	STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMAL PROTEIN S8. Descriptor: 16S RIBOSOMAL RNA, RIBOSOMAL PROTEIN S8 Authors: Lancaster, L, Culver, G.M, Yusupova, G.Z, Cate, J.H, Yuspov, M.M, Noller, H.F. Deposit date: 2000-03-16 Release date: 2000-06-12 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (7.5 Å) Cite: The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography. RNA, 6, 2000
1F6U	NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition Descriptor: HIV-1 NUCLEOCAPSID PROTEIN, HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING, ZINC ION Authors: Amarasinghe, G.K, De Guzman, R.N, Turner, R.B, Chancellor, K.J, Summers, M.F. Deposit date: 2000-06-23 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition. J.Mol.Biol., 301, 2000
4DCM	Crystal Structure of methyltransferase RlmG modifying G1835 of 23S rRNA in Escherichia coli Descriptor: DI(HYDROXYETHYL)ETHER, Ribosomal RNA large subunit methyltransferase G, S-ADENOSYLMETHIONINE Authors: Zhang, H, Gao, Z.Q, Dong, Y.H. Deposit date: 2012-01-17 Release date: 2012-08-01 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.297 Å) Cite: Structural insights into the function of 23S rRNA methyltransferase RlmG (m2G1835) from Escherichia coli. Rna, 18, 2012
1D96	MOLECULAR STRUCTURE OF R(GCG)D(TATACGC): A DNA-RNA HYBRID HELIX JOINED TO DOUBLE HELICAL DNA Descriptor: DNA/RNA (5'-R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*GP*C)-3') Authors: Wang, A.H.-J, Fujii, S, Van Boom, J.H, Van Der Marel, G.A, Van Boeckel, S.A.A, Rich, A. Deposit date: 1992-10-17 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular structure of r(GCG)d(TATACGC): a DNA--RNA hybrid helix joined to double helical DNA. Nature, 299, 1982
8E3S	CryoEM structure of yeast Arginyltransferase 1 (ATE1) Descriptor: Arginyl-tRNA--protein transferase 1, ZINC ION Authors: Huang, W, Zhang, Y, Taylor, D.J. Deposit date: 2022-08-17 Release date: 2023-04-26 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: The structural basis of tRNA recognition by arginyl-tRNA-protein transferase. Nat Commun, 14, 2023
3PF4	Crystal structure of Bs-CspB in complex with r(GUCUUUA) Descriptor: Cold shock protein cspB, MAGNESIUM ION, SODIUM ION, ... Authors: Sachs, R, Max, K.E.A, Heinemann, U. Deposit date: 2010-10-27 Release date: 2011-09-21 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.38 Å) Cite: RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution. Rna, 18, 2012
3PF5	Crystal structure of Bs-CspB in complex with rU6 Descriptor: Cold shock protein cspB, MAGNESIUM ION, hexaribouracil (rU6) Authors: Sachs, R, Max, K.E.A, Heinemann, U. Deposit date: 2010-10-27 Release date: 2011-09-21 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.68 Å) Cite: RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution. Rna, 18, 2012
1DQF	CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS Descriptor: CALCIUM ION, RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'), RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3') Authors: Xiong, Y, Sundaralingam, M. Deposit date: 2000-01-04 Release date: 2000-11-13 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge. RNA, 6, 2000
2EUY	Solution structure of the internal loop of human U65 H/ACA snoRNA 3' hairpin Descriptor: U65 box H/ACA snoRNA Authors: Feigon, J, Khanna, M, Wu, H, Johansson, C, Caizergues-Ferrer, M. Deposit date: 2005-10-30 Release date: 2006-01-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural study of the H/ACA snoRNP components Nop10p and the 3' hairpin of U65 snoRNA. Rna, 12, 2006
2GTT	Crystal structure of the rabies virus nucleoprotein-RNA complex Descriptor: Nucleoprotein, PHOSPHATE ION, RNA (99-MER) Authors: Albertini, A.A.V, Wernimont, A.K, Muziol, T, Ravelli, R.B.G, Weissenhorn, W, Ruigrok, R.W.H. Deposit date: 2006-04-28 Release date: 2006-09-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.49 Å) Cite: Crystal Structure of the Rabies Virus Nucleoprotein-RNA Complex Science, 313, 2006

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