1F6U

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition

Summary for 1F6U

Related1A1T 1ESY
DescriptorHIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING, HIV-1 NUCLEOCAPSID PROTEIN, ZINC ION (3 entities in total)
Functional Keywordshiv-1, rna, protein-rna complex, packaging signal, structural protein-rna complex, structural protein/rna
Biological sourceHuman immunodeficiency virus 1
Cellular locationMatrix protein p17: Virion (Potential). Capsid protein p24: Virion (Potential). Nucleocapsid protein p7: Virion (Potential) P35962
Total number of polymer chains2
Total molecular weight12678.06
Authors
Amarasinghe, G.K.,De Guzman, R.N.,Turner, R.B.,Chancellor, K.J.,Summers, M.F. (deposition date: 2000-06-23, release date: 2000-10-09, Last modification date: 2011-07-13)
Primary citation
Amarasinghe, G.K.,De Guzman, R.N.,Turner, R.B.,Chancellor, K.J.,Wu, Z.R.,Summers, M.F.
NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition.
J.Mol.Biol., 301:491-511, 2000
PubMed: 10926523 (PDB entries with the same primary citation)
DOI: 10.1006/jmbi.2000.3979
MImport into Mendeley
Experimental method
SOLUTION NMR
NMR Information
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone444.5%30.6%0.13MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all NMR structures