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2WG4
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BU of 2wg4 by Molmil
Crystal structure of the complex between human hedgehog-interacting protein HIP and sonic hedgehog without calcium
Descriptor: HEDGEHOG-INTERACTING PROTEIN, SODIUM ION, SONIC HEDGEHOG PROTEIN N-PRODUCT, ...
Authors:Bishop, B, Aricescu, A.R, Harlos, K, O'Callaghan, C.A, Jones, E.Y, Siebold, C.
Deposit date:2009-04-15
Release date:2009-06-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural Insights Into Hedgehog Ligand Sequestration by the Human Hedgehog-Interacting Protein Hip
Nat.Struct.Mol.Biol., 16, 2009
6PVN
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BU of 6pvn by Molmil
Cryo-EM structure of mouse TRPV3-Y564A in putative sensitized state at 4 degrees Celsius
Descriptor: SODIUM ION, Transient receptor potential cation channel subfamily V member 3
Authors:Singh, A.K, McGoldrick, L.L, Sobolevsky, A.I.
Deposit date:2019-07-21
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:Structural basis of temperature sensation by the TRP channel TRPV3.
Nat.Struct.Mol.Biol., 26, 2019
4ET0
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BU of 4et0 by Molmil
Crystal structure of circularly permuted human asparaginase-like protein 1
Descriptor: L-asparaginase, SODIUM ION
Authors:Li, W.Z, Yogesha, S.D, Zhang, Y.
Deposit date:2012-04-23
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Uncoupling Intramolecular Processing and Substrate Hydrolysis in the N-Terminal Nucleophile Hydrolase hASRGL1 by Circular Permutation.
Acs Chem.Biol., 7, 2012
6X01
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BU of 6x01 by Molmil
Crystal structure of the GltPh V216C-A391C mutant cross-linked in outward-facing state
Descriptor: ASPARTIC ACID, Glutamate transporter homolog, SODIUM ION
Authors:Chen, I, Font, J, Ryan, R.
Deposit date:2020-05-15
Release date:2021-02-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Glutamate transporters have a chloride channel with two hydrophobic gates.
Nature, 591, 2021
5ZMV
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BU of 5zmv by Molmil
Crystal structure of the E309A mutant of SR Ca2+-ATPase in E2(TG)
Descriptor: OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, ...
Authors:Ogawa, H, Hirata, A, Tsueda, J, Toyoshima, C.
Deposit date:2018-04-06
Release date:2018-12-12
Last modified:2018-12-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Mechanism of the E2 to E1 transition in Ca2+pump revealed by crystal structures of gating residue mutants.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2C8L
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BU of 2c8l by Molmil
Crystal Structure of (SR) Calcium-ATPase E2(Tg) form
Descriptor: OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, ...
Authors:Jensen, A.M, Sorensen, T.L, Olesen, C, Moller, J.V, Nissen, P.
Deposit date:2005-12-06
Release date:2006-06-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Modulatory and Catalytic Modes of ATP Binding by the Calcium Pump
Embo J., 25, 2006
6CAA
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BU of 6caa by Molmil
CryoEM structure of human SLC4A4 sodium-coupled acid-base transporter NBCe1
Descriptor: Electrogenic sodium bicarbonate cotransporter 1
Authors:Huynh, K.W, Jiang, J, Abuladze, N, Tsirulnikov, K, Kao, L, Shao, X, Newman, D, Azimov, R, Pushkin, A, Zhou, Z.H, Kurtz, I.
Deposit date:2018-01-29
Release date:2018-03-07
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:CryoEM structure of the human SLC4A4 sodium-coupled acid-base transporter NBCe1.
Nat Commun, 9, 2018
5NQK
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BU of 5nqk by Molmil
human 199.16 TCR in complex with Melan-A/MART-1 (26-35) peptide and HLA-A2
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-2 alpha chain, ...
Authors:Exertier, C, Reiser, J.-B, Lantez, V, Chouquet, A, Bonneville, M, Saulquin, X, Housset, D.
Deposit date:2017-04-20
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:human 199.16 TCR in complex with Melan-A/MART-1 (26-35) peptide and HLA-A2
To Be Published
3P0J
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BU of 3p0j by Molmil
Leishmania major Tyrosyl-tRNA synthetase in complex with tyrosinol, triclinic crystal form 1
Descriptor: 4-[(2S)-2-amino-3-hydroxypropyl]phenol, SODIUM ION, Tyrosyl-tRNA synthetase
Authors:Larson, E.T, Merritt, E.A, Medical Structural Genomics of Pathogenic Protozoa (MSGPP)
Deposit date:2010-09-28
Release date:2011-03-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:The Double-Length Tyrosyl-tRNA Synthetase from the Eukaryote Leishmania major Forms an Intrinsically Asymmetric Pseudo-Dimer.
J.Mol.Biol., 409, 2011
6DX0
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BU of 6dx0 by Molmil
Hermes transposase deletion dimer complex with (A/T) DNA
Descriptor: DNA (25-MER), DNA (5'-D(*AP*GP*AP*GP*AP*AP*CP*AP*AP*CP*AP*AP*CP*AP*AP*G)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*AP*A)-3'), ...
Authors:Dyda, F, Voth, A.R, Hickman, A.B.
Deposit date:2018-06-28
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase.
Nucleic Acids Res., 46, 2018
4GDL
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BU of 4gdl by Molmil
Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1
Descriptor: Autophagy protein 5, Autophagy-related protein 16-1, SODIUM ION, ...
Authors:Otomo, C, Metlagel, Z, Takaesu, G, Otomo, T.
Deposit date:2012-07-31
Release date:2012-12-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.875 Å)
Cite:Structure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy.
Nat.Struct.Mol.Biol., 20, 2013
7UGV
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BU of 7ugv by Molmil
Asp-bound GltPh RSMR mutant in IFS-A2 state
Descriptor: ASPARTIC ACID, Glutamate transporter homolog, SODIUM ION
Authors:Huang, Y, Boudker, O.
Deposit date:2022-03-25
Release date:2023-03-29
Last modified:2023-05-10
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Environmentally Ultrasensitive Fluorine Probe to Resolve Protein Conformational Ensembles by 19 F NMR and Cryo-EM.
J.Am.Chem.Soc., 145, 2023
7UGD
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BU of 7ugd by Molmil
Asp-bound GltPh RSMR mutant in IFS-A1 state
Descriptor: ASPARTIC ACID, Glutamate transporter homolog, SODIUM ION
Authors:Huang, Y, Boudker, O.
Deposit date:2022-03-24
Release date:2023-03-29
Last modified:2023-05-10
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Environmentally Ultrasensitive Fluorine Probe to Resolve Protein Conformational Ensembles by 19F NMR and Cryo-EM
J.Am.Chem.Soc., 145, 2023
4Q3H
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BU of 4q3h by Molmil
The crystal structure of NHERF1 PDZ2 CXCR2 complex revealed by the NHERF1 CXCR2 chimeric protein
Descriptor: Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Authors:Holcomb, J, Jiang, Y, Trescott, L, Lu, G, Brunzelle, J, Sirinupong, N, Li, C, Yang, Z.
Deposit date:2014-04-11
Release date:2014-05-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.443 Å)
Cite:Crystal structure of the NHERF1 PDZ2 domain in complex with the chemokine receptor CXCR2 reveals probable modes of PDZ2 dimerization.
Biochem.Biophys.Res.Commun., 448, 2014
3E0Y
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BU of 3e0y by Molmil
The crystal structure of a conserved domain from a protein of Geobacter sulfurreducens PCA
Descriptor: Conserved domain protein, SODIUM ION
Authors:Tan, K, Bigelow, L, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-08-01
Release date:2008-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The crystal structure of a conserved domain from a protein of Geobacter sulfurreducens PCA
To be Published
1EUT
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BU of 1eut by Molmil
SIALIDASE, LARGE 68KD FORM, COMPLEXED WITH GALACTOSE
Descriptor: SIALIDASE, SODIUM ION
Authors:Gaskell, A, Crennell, S.J, Taylor, G.L.
Deposit date:1996-06-21
Release date:1997-01-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The three domains of a bacterial sialidase: a beta-propeller, an immunoglobulin module and a galactose-binding jelly-roll.
Structure, 3, 1995
1XK8
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BU of 1xk8 by Molmil
Divalent cation tolerant protein CUTA from Homo sapiens O60888
Descriptor: Divalent cation tolerant protein CUTA, SODIUM ION
Authors:Tempel, W, Chen, L, Liu, Z.-J, Lee, D, Shah, A, Dailey, T.A, Mayer, M.R, Arendall III, W.B, Rose, J.P, Dailey, H.A, Richardson, J.S, Richardson, D.C, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-09-27
Release date:2004-10-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Divalent cation tolerant protein CUTA from Homo sapiens O60888
To be published
2JXO
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BU of 2jxo by Molmil
Structure of the second PDZ domain of NHERF-1
Descriptor: Ezrin-radixin-moesin-binding phosphoprotein 50
Authors:Cheng, H, Li, J, Dai, Z, Bu, Z, Roder, H.
Deposit date:2007-11-27
Release date:2008-12-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Autoinhibitory Interactions between the PDZ2 and C-terminal Domains in the Scaffolding Protein NHERF1
Structure, 17, 2009
2GVH
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BU of 2gvh by Molmil
Crystal structure of Acyl-CoA hydrolase (15159470) from AGROBACTERIUM TUMEFACIENS at 2.65 A resolution
Descriptor: AGR_L_2016p, SODIUM ION
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-05-02
Release date:2006-05-30
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Acyl-CoA hydrolase (15159470) from AGROBACTERIUM TUMEFACIENS at 2.65 A resolution
To be published
2M0T
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BU of 2m0t by Molmil
Structural characterization of the extended PDZ1 domain from NHERF1
Descriptor: Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Authors:Bhattacharya, S, Ju, J.H, Cowburn, D, Bu, Z.
Deposit date:2012-11-06
Release date:2013-04-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1.
J.Mol.Biol., 425, 2013
3TU0
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BU of 3tu0 by Molmil
Crystal structure of T355V, S354A, K288A LeuT mutant in complex with alanine and sodium
Descriptor: ALANINE, Leucine transporter LeuT, SODIUM ION
Authors:Krishnamurthy, H, Gouaux, E.
Deposit date:2011-09-15
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.994 Å)
Cite:X-ray structures of LeuT in substrate-free outward-open and apo inward-open states.
Nature, 481, 2012
6PVL
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BU of 6pvl by Molmil
Cryo-EM structure of mouse TRPV3 in closed state at 42 degrees Celsius
Descriptor: SODIUM ION, Transient receptor potential cation channel subfamily V member 3
Authors:Singh, A.K, McGoldrick, L.L, Sobolevsky, A.I.
Deposit date:2019-07-21
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural basis of temperature sensation by the TRP channel TRPV3.
Nat.Struct.Mol.Biol., 26, 2019
6PVM
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BU of 6pvm by Molmil
Cryo-EM structure of mouse TRPV3 in putative sensitized state at 42 degrees Celsius
Descriptor: SODIUM ION, Transient receptor potential cation channel subfamily V member 3
Authors:Singh, A.K, McGoldrick, L.L, Sobolevsky, A.I.
Deposit date:2019-07-21
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural basis of temperature sensation by the TRP channel TRPV3.
Nat.Struct.Mol.Biol., 26, 2019
6PVP
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BU of 6pvp by Molmil
Cryo-EM structure of mouse TRPV3-Y564A in open state at 37 degrees Celsius
Descriptor: SODIUM ION, Transient receptor potential cation channel subfamily V member 3
Authors:Singh, A.K, McGoldrick, L.L, Sobolevsky, A.I.
Deposit date:2019-07-21
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.48 Å)
Cite:Structural basis of temperature sensation by the TRP channel TRPV3.
Nat.Struct.Mol.Biol., 26, 2019
3FOG
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BU of 3fog by Molmil
Crystal structure of the PX domain of sorting nexin-17 (SNX17)
Descriptor: SODIUM ION, Sorting nexin-17
Authors:Wisniewska, M, Tresaugues, L, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Karlberg, T, Kotenyova, T, Lehtio, L, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Siponen, M.I, Thorsell, A.G, Van Den Berg, S, Weigelt, J, Welin, M, Wikstrom, M, Schueler, H, Structural Genomics Consortium (SGC)
Deposit date:2008-12-30
Release date:2009-01-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the PX domain of sorting nexin-17 (SNX17)
TO BE PUBLISHED

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PDB entries from 2024-07-10

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