Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2FD0
DownloadVisualize
BU of 2fd0 by Molmil
HIV-1 DIS kissing-loop in complex with lividomycin
Descriptor: (2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL, CHLORIDE ION, HIV-1 DIS RNA, ...
Authors:Ennifar, E, Paillart, J.C, Marquet, R, Dumas, P.
Deposit date:2005-12-13
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.
Nucleic Acids Res., 34, 2006
3WOF
DownloadVisualize
BU of 3wof by Molmil
Crystal structure of P23-45 gp39 (6-132) bound to Thermus thermophilus RNA polymerase beta-flap domain
Descriptor: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOE
DownloadVisualize
BU of 3woe by Molmil
Crystal structure of P23-45 gp39 (6-109) bound to Thermus thermophilus RNA polymerase beta-flap domain
Descriptor: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
8BN6
DownloadVisualize
BU of 8bn6 by Molmil
Pseudomonas aeruginosa DNA gyrase B 24kDa ATPase subdomain complexed with EBL3021
Descriptor: 2-[[3,4-bis(chloranyl)-5-methyl-1~{H}-pyrrol-2-yl]carbonylamino]-4-morpholin-4-yl-1,3-benzothiazole-6-carboxylic acid, CALCIUM ION, DNA gyrase subunit B
Authors:Durcik, M, Zega, A, Zidar, N, Ilas, J, Tomasic, T, Masic, L.P, Mundy, J.E.A, Stevenson, C.E.M, Burton, N, Lawson, D.M, Maxwell, A, Kikelj, D.
Deposit date:2022-11-12
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:New Dual Inhibitors of Bacterial Topoisomerases with Broad-Spectrum Antibacterial Activity and In Vivo Efficacy against Vancomycin-Intermediate Staphylococcus aureus .
J.Med.Chem., 66, 2023
3N4M
DownloadVisualize
BU of 3n4m by Molmil
E. coli RNA polymerase alpha subunit C-terminal domain in complex with CAP and DNA
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, DI(HYDROXYETHYL)ETHER, ...
Authors:Lara-Gonzalez, S, Birktoft, J.J, Lawson, C.L.
Deposit date:2010-05-21
Release date:2011-05-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.987 Å)
Cite:The RNA Polymerase alpha Subunit Recognizes the DNA Shape of the Upstream Promoter Element.
Biochemistry, 59, 2020
8BG1
DownloadVisualize
BU of 8bg1 by Molmil
Crystal structure of the SARS-CoV-2 S RBD in complex with pT1511 scFV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hansen, G, Ssebyatika, G.L, Krey, T.
Deposit date:2022-10-27
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses?
To be published
8BEC
DownloadVisualize
BU of 8bec by Molmil
Crystal structure of the SARS-CoV-2 S RBD in complex with pT1375 scFV
Descriptor: SULFATE ION, Spike protein S1, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hansen, G, Ssebyatika, G.L, Krey, T.
Deposit date:2022-10-21
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses?
To be published
8BG2
DownloadVisualize
BU of 8bg2 by Molmil
Crystal structure of the SARS-CoV-2 S RBD in complex with pT1580 scFV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, pT1375 single-chain Fv
Authors:Hansen, G, Ssebyatika, G.L, Krey, T.
Deposit date:2022-10-27
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses?
To be published
3ADJ
DownloadVisualize
BU of 3adj by Molmil
Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing
Descriptor: F21M12.9 protein
Authors:Yuan, Y.A, Chen, H.Y.
Deposit date:2010-01-22
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing
Structure, 18, 2010
4Y27
DownloadVisualize
BU of 4y27 by Molmil
E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662
Descriptor: 27-mer 23S Sarcin-Ricil Loop
Authors:Ennifar, E, Micura, R, Fluer, S.
Deposit date:2015-02-09
Release date:2015-11-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (0.998 Å)
Cite:Role of a ribosomal RNA phosphate oxygen during the EF-G-triggered GTP hydrolysis.
Proc.Natl.Acad.Sci.USA, 112, 2015
3O8B
DownloadVisualize
BU of 3o8b by Molmil
Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV
Descriptor: HCV NS3 protease/helicase, SULFATE ION, ZINC ION
Authors:Appleby, T.C, Somoza, J.R.
Deposit date:2010-08-02
Release date:2011-01-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV.
J.Mol.Biol., 405, 2011
1I4B
DownloadVisualize
BU of 1i4b by Molmil
The solution structure of the major family of the mutant stem loop C 5'UUA3' triloop of brome mosaic virus (+) strand RNA
Descriptor: 5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3'
Authors:Tinoco Jr, I, Kim, C.-H.
Deposit date:2001-02-20
Release date:2001-04-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter
J.Mol.Biol., 307, 2001
7K95
DownloadVisualize
BU of 7k95 by Molmil
Crystal structure of human CPSF30 in complex with hFip1
Descriptor: Isoform 2 of Cleavage and polyadenylation specificity factor subunit 4, Pre-mRNA 3'-end-processing factor FIP1, ZINC ION
Authors:Hamilton, K, Tong, L.
Deposit date:2020-09-28
Release date:2020-11-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular mechanism for the interaction between human CPSF30 and hFip1.
Genes Dev., 34, 2020
6VZC
DownloadVisualize
BU of 6vzc by Molmil
Tandem UU:GA mismatch within an RNA helix
Descriptor: RNA 28-mer
Authors:Nikonowicz, E.P, Chang, A.T.
Deposit date:2020-02-28
Release date:2020-09-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:2-Amino-1,3-benzothiazole-6-carboxamide Preferentially Binds the Tandem Mismatch Motif r(UY:GA).
Biochemistry, 59, 2020
1IDV
DownloadVisualize
BU of 1idv by Molmil
NMR structure of HCV ires RNA domain IIIC
Descriptor: HEPATITIS C IRES RNA DOMAIN IIIC
Authors:Kaluarachchi, K, Rijnbrand, R, Lemon, S.M, Gorenstein, D.G.
Deposit date:2001-04-05
Release date:2001-10-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Mutational and structural analysis of stem-loop IIIC of the hepatitis C virus and GB virus B internal ribosome entry sites
J.Mol.Biol., 343, 2004
3D6V
DownloadVisualize
BU of 3d6v by Molmil
Crystal structure of 4-(trifluoromethyldiazirinyl)phenylalanyl-tRNA synthetase
Descriptor: 4-(2,2,2-TRIFLUOROETHYL)-L-PHENYLALANINE, BETA-MERCAPTOETHANOL, Tyrosyl-tRNA synthetase
Authors:Liu, W, Tippmann, E, Mack, A.V, Schultz, P.G.
Deposit date:2008-05-20
Release date:2008-05-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A genetically encoded diazirine photocrosslinker in Escherichia coli
ChemBioChem, 8, 2007
1M5K
DownloadVisualize
BU of 1m5k by Molmil
Crystal structure of a hairpin ribozyme in the catalytically-active conformation
Descriptor: CALCIUM ION, CHLORIDE ION, PROTEIN (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A), ...
Authors:Rupert, P.B, Ferre-D'Amare, A.R.
Deposit date:2002-07-09
Release date:2002-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Transition state stabilization by a catalytic RNA
Science, 298, 2002
4JVY
DownloadVisualize
BU of 4jvy by Molmil
Structure of the STAR (signal transduction and activation of RNA) domain of GLD-1 bound to RNA
Descriptor: Female germline-specific tumor suppressor gld-1, RNA (5'-R(P*CP*UP*AP*AP*CP*AP*A)-3')
Authors:Teplova, M, Hafner, M, Teplov, D, Essig, K, Tuschl, T, Patel, D.J.
Deposit date:2013-03-26
Release date:2013-05-08
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.853 Å)
Cite:Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites.
Genes Dev., 27, 2013
4JGN
DownloadVisualize
BU of 4jgn by Molmil
Crystal structure of RNA silencing suppressor p19 with 1nt-5'-overhanging double-helical RNA 20mer pUUG(CUG)5CU
Descriptor: 5'-R(P*UP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*U)-3', RNA silencing suppressor p19, SULFATE ION
Authors:Katorcha, E, Tamjar, J, Popov, A.N, Malinina, L.
Deposit date:2013-03-01
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Procrustean bed of RNA silencing suppression
To be Published
7D4F
DownloadVisualize
BU of 7d4f by Molmil
Structure of COVID-19 RNA-dependent RNA polymerase bound to suramin
Descriptor: 8-(3-(3-aminobenzamido)-4-methylbenzamido)naphthalene-1,3,5-trisulfonic acid, Non-structural protein 7, Non-structural protein 8, ...
Authors:Li, Z, Yin, W, Zhou, Z, Yu, X, Xu, H.
Deposit date:2020-09-23
Release date:2020-11-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Structural basis for inhibition of the SARS-CoV-2 RNA polymerase by suramin.
Nat.Struct.Mol.Biol., 28, 2021
2M84
DownloadVisualize
BU of 2m84 by Molmil
Structure of 2'F-RNA/2'F-ANA chimeric duplex
Descriptor: 2'F-RNA/2'F-ANA CHIMERIC DUPLEX
Authors:Martin-Pintado, N, Deleavey, G, Portella, G, Campos, R, Orozco, M, Damha, M, Gonzalez, C.
Deposit date:2013-05-07
Release date:2013-11-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Backbone FCHO Hydrogen Bonds in 2'F-Substituted Nucleic Acids.
Angew.Chem.Int.Ed.Engl., 52, 2013
4CSG
DownloadVisualize
BU of 4csg by Molmil
Structural insights into Toscana virus RNA encapsidation
Descriptor: NUCLEOPROTEIN
Authors:Olal, D, Daumke, O.
Deposit date:2014-03-07
Release date:2014-04-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Structural Insights Into RNA Encapsidation and Helical Assembly of the Toscana Virus Nucleoprotein.
Nucleic Acids Res., 42, 2014
6AIB
DownloadVisualize
BU of 6aib by Molmil
Crystal structures of the N-terminal RecA-like domain 1 of Staphylococcus aureus DEAD-box Cold shock RNA helicase CshA
Descriptor: DEAD-box ATP-dependent RNA helicase CshA
Authors:Chengliang, W, Tian, T, Xiaobao, C, Xuan, Z, Jianye, Z.
Deposit date:2018-08-22
Release date:2018-11-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of the N-terminal domain of the Staphylococcus aureus DEAD-box RNA helicase CshA and its complex with AMP
Acta Crystallogr F Struct Biol Commun, 74, 2018
3F73
DownloadVisualize
BU of 3f73 by Molmil
Alignment of guide-target seed duplex within an argonaute silencing complex
Descriptor: ARGONAUTE, DNA (5'-D(P*DTP*DGP*DAP*DGP*DGP*DTP*DAP*DGP*DTP*DAP*DGP*DGP*DTP*DTP*DGP*DTP*DA*DTP*DAP*DGP*DT)-3'), MAGNESIUM ION, ...
Authors:Wang, Y, Li, H, Sheng, G, Juranek, S, Tuschl, T, Patel, D.J.
Deposit date:2008-11-07
Release date:2008-12-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex.
Nature, 456, 2008
6AIC
DownloadVisualize
BU of 6aic by Molmil
Crystal structures of the N-terminal domain of Staphylococcus aureus DEAD-box Cold shock RNA helicase CshA in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, DEAD-box ATP-dependent RNA helicase CshA
Authors:Tian, T, Chengliang, W, Xiaobao, C, Xuan, Z, Jianye, Z.
Deposit date:2018-08-22
Release date:2018-11-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of the N-terminal domain of the Staphylococcus aureus DEAD-box RNA helicase CshA and its complex with AMP
Acta Crystallogr F Struct Biol Commun, 74, 2018

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon