PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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1YGB	Crystal Structure of the catalytic fragment of alanyl-tRNA synthetase in complex with L-serine Descriptor: Alanyl-tRNA synthetase, SERINE Authors: Swairjo, M.A, Schimmel, P.R. Deposit date: 2005-01-04 Release date: 2005-01-25 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase. Proc.Natl.Acad.Sci.USA, 102, 2005
1YFT	The crystal structure of the catalytic fragment of alanyl-tRNA synthetase in complex wtih glycine Descriptor: Alanyl-tRNA synthetase, GLYCINE Authors: Swairjo, M.A, Schimmel, P.R. Deposit date: 2005-01-03 Release date: 2005-01-25 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase. Proc.Natl.Acad.Sci.USA, 102, 2005
5THL	Crystal structure of the human tyrosyl-tRNA synthetase mutant G41R Descriptor: Tyrosine--tRNA ligase, cytoplasmic Authors: Blocquel, D, Sajish, M, Yang, X.L. Deposit date: 2016-09-29 Release date: 2017-06-07 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy. Nucleic Acids Res., 45, 2017
257D	ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA Descriptor: DNA (5'-D(*GP*CP*CP*GP*GP*C)-3') Authors: Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S. Deposit date: 1996-03-31 Release date: 1996-04-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J.Mol.Biol., 249, 1995
256D	ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA Descriptor: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*C)-3') Authors: Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S. Deposit date: 1996-03-31 Release date: 1996-04-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J.Mol.Biol., 249, 1995
6YBE	RNASE 3/1 version2 Descriptor: RNASE 3/1 version2 Authors: Fernandez-Millan, P, Prats-Ejarque, G, Vazquez-Monteagudo, S, Boix, E. Deposit date: 2020-03-16 Release date: 2021-10-06 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.14 Å) Cite: Exploring the RNase A scaffold to combine catalytic and antimicrobial activities. Structural characterization of RNase 3/1 chimeras. Front Mol Biosci, 9, 2022
8PDM	11-mer ring of human metapneumovirus (HMPV) N-RNA Descriptor: Nucleoprotein, RNA Authors: Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M. Deposit date: 2023-06-12 Release date: 2023-12-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus. Nat Commun, 14, 2023
8PDN	Spiral of assembled human metapneumovirus (HMPV) N-RNA Descriptor: Nucleoprotein, RNA Authors: Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M. Deposit date: 2023-06-12 Release date: 2023-12-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus. Nat Commun, 14, 2023
8PDL	10-mer ring of human metapneumovirus (HMPV) N-RNA Descriptor: Nucleoprotein, RNA Authors: Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M. Deposit date: 2023-06-12 Release date: 2023-12-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus. Nat Commun, 14, 2023
8PDO	Local refinement of dimeric human metapneumovirus (HMPV) N-RNA Descriptor: Nucleoprotein, RNA Authors: Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M. Deposit date: 2023-06-12 Release date: 2023-12-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus. Nat Commun, 14, 2023
7UR5	allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome Descriptor: allo-tRNAUTu1 Authors: Zhang, J, Krahn, N, Prabhakar, A, Vargas-Rodriguez, O, Krupkin, M, Fu, Z, Acosta-Reyes, F.J, Ge, X, Choi, J, Crnkovic, A, Ehrenberg, M, Viani Puglisi, E, Soll, D, Puglisi, J. Deposit date: 2022-04-21 Release date: 2022-08-10 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Uncovering translation roadblocks during the development of a synthetic tRNA. Nucleic Acids Res., 50, 2022
2A9L	SOLUTION NMR STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF, MINIMIZED AVERAGE STRUCTURE Descriptor: ABISS7 RNA Authors: Diener, J.L, Moore, P.B. Deposit date: 1998-04-07 Release date: 1998-06-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a substrate for the archaeal pre-tRNA splicing endonucleases: the bulge-helix-bulge motif. Mol.Cell, 1, 1998
7URM	allo-tRNAUTu1A in the P site of the E. coli ribosome Descriptor: allo-tRNAUTU1A Authors: Zhang, J, Prabhakar, A, Krahn, N, Vargas-Rodriguez, O, Krupkin, M, Fu, Z, Acosta-Reyes, F.J, Ge, X, Choi, J, Crnkovic, A, Ehrenberg, M, Viani Puglisi, E, Soll, D, Puglisi, J. Deposit date: 2022-04-22 Release date: 2022-08-10 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: Uncovering translation roadblocks during the development of a synthetic tRNA. Nucleic Acids Res., 50, 2022
7URI	allo-tRNAUTu1A in the A site of the E. coli ribosome Descriptor: Allo-tRNAUTu1A Authors: Zhang, J, Prabhakar, A, Krahn, N, Vargas-Rodriguez, O, Krupkin, M, Fu, Z, Acosta-Reyes, F.J, Ge, X, Choi, J, Crnkovic, A, Ehrenberg, M, Viani Puglisi, E, Soll, D, Puglisi, J. Deposit date: 2022-04-22 Release date: 2022-08-10 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Uncovering translation roadblocks during the development of a synthetic tRNA. Nucleic Acids Res., 50, 2022
5IEM	NMR structure of the 5'-terminal hairpin of the 7SK snRNA Descriptor: 7SK snRNA Authors: Bourbigot, S, Dock-Bregeon, A.C, Coutant, J, Kieffer, B, Lebars, I. Deposit date: 2016-02-25 Release date: 2016-11-02 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Solution structure of the 5'-terminal hairpin of the 7SK small nuclear RNA. RNA, 22, 2016
1Q75	Solution structure of the dyskeratosis congenita mutant P2b hairpin from human telomerase RNA Descriptor: DKC mutant P2b telomerase RNA Authors: Theimer, C.A, Finger, L.D, Feigon, J. Deposit date: 2003-08-15 Release date: 2003-12-23 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: YNMG tetraloop formation by a dyskeratosis congenita mutation in human telomerase RNA. Rna, 9, 2003
6W77	30S-Inactivated-high-Mg2+ Class A Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-18 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
217D	CRYSTAL STRUCTURES OF THE B-FORM DNA-RNA CHIMER (5'-D(*IP*)-R(*CP*)-D(*IP*)-R(*CP*)-D(*IP*CP*IP*C)-3') COMPLEXED WITH DISTAMYCIN Descriptor: DISTAMYCIN A, DNA/RNA (5'-D(*IP*)-R(*CP*)-D(*IP*)-R(*CP*)-D(*IP*CP*IP*C)-3'), MAGNESIUM ION Authors: Chen, X, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1995-07-18 Release date: 1996-01-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structures of B-form DNA-RNA chimers complexed with distamycin. Nat.Struct.Biol., 2, 1995
216D	CRYSTAL STRUCTURES OF THE B-FORM DNA-RNA CHIMER (5'-D(*IP*)-R(*CP*)-D(*IP*CP*IP*CP*IP*C)-3') COMPLEXED WITH DISTAMYCIN Descriptor: DISTAMYCIN A, DNA/RNA (5'-D(*IP*)-R(*CP*)-D(*IP*CP*IP*CP*IP*C)-3'), MAGNESIUM ION Authors: Chen, X, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1995-07-18 Release date: 1996-01-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Crystal structures of B-form DNA-RNA chimers complexed with distamycin. Nat.Struct.Biol., 2, 1995
5IUF	Bacillus NanoRNase A active site mutant bound to pAp Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Bifunctional oligoribonuclease and PAP phosphatase NrnA Authors: Schmier, B.J, Nelersa, C.M, Malhotra, A. Deposit date: 2016-03-17 Release date: 2017-08-02 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural Basis for the Bidirectional Activity of Bacillus nanoRNase NrnA. Sci Rep, 7, 2017
6W7N	30S-Inactive-low-Mg2+ Class A Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S12, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-19 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
6W6K	30S-Activated-high-Mg2+ Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-17 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
6W7W	30S-Inactive-low-Mg2+ Class B Descriptor: 16S rRNA, 30S ribosomal protein S12, 30S ribosomal protein S15, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-19 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
8P7D	CryoEM structure of METTL6 tRNA SerRS complex in a 1:1:2 stoichiometry Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, Serine tRNA, ... Authors: Throll, P, Dolce, L.G, Kowalinski, E. Deposit date: 2023-05-30 Release date: 2024-06-12 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural basis of tRNA recognition by the m 3 C RNA methyltransferase METTL6 in complex with SerRS seryl-tRNA synthetase. Nat.Struct.Mol.Biol., 2024
8P7B	CryoEM structure of METTL6 tRNA SerRS complex in a 1:2:2 stoichiometry Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, Serine tRNA, ... Authors: Throll, P, Dolce, L.G, Kowalinski, E. Deposit date: 2023-05-30 Release date: 2024-06-12 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (2.42 Å) Cite: Structural basis of tRNA recognition by the m 3 C RNA methyltransferase METTL6 in complex with SerRS seryl-tRNA synthetase. Nat.Struct.Mol.Biol., 2024

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