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7YNW
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BU of 7ynw by Molmil
Crystal structure of O-(2-nitrobenzyl)-L-tyrosine-tRNA sythetase in complex with O-(2-nitrobenzyl)-L-tyrosine
Descriptor: (2~{S})-2-azanyl-3-[4-[(2-nitrophenyl)methoxy]phenyl]propanoic acid, Tyrosine--tRNA ligase
Authors:Hosaka, T, Shirouzu, M.
Deposit date:2022-08-01
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography.
Int J Mol Sci, 23, 2022
7YNV
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BU of 7ynv by Molmil
Crystal structure of photolysed Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Hosaka, T, Shirouzu, M.
Deposit date:2022-08-01
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography.
Int J Mol Sci, 23, 2022
7YNU
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BU of 7ynu by Molmil
Crystal structure of Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Hosaka, T, Shirouzu, M.
Deposit date:2022-08-01
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography.
Int J Mol Sci, 23, 2022
7YNH
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BU of 7ynh by Molmil
Catalytic intermediate of copper amine oxidase determined by serial femtosecond X-ray crystallography using a single-flow liquid jet system
Descriptor: COPPER (II) ION, PHENYLACETALDEHYDE, Phenylethylamine oxidase, ...
Authors:Murakawa, T, Okajima, T.
Deposit date:2022-07-31
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Serial femtosecond X-ray crystallography of an anaerobically formed catalytic intermediate of copper amine oxidase.
Acta Crystallogr D Struct Biol, 78, 2022
7YNE
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BU of 7yne by Molmil
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Takeda, S.
Deposit date:2022-07-30
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7YN3
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BU of 7yn3 by Molmil
Crystal structure of CcbD complex with CcbZ carrier protein domain
Descriptor: 1,1'-ethane-1,2-diyldipyrrolidine-2,5-dione, 4'-PHOSPHOPANTETHEINE, CcbD, ...
Authors:Mori, T, Lyu, S, Abe, I.
Deposit date:2022-07-29
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of CcbD complex with carrier protein
To Be Published
7YML
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BU of 7yml by Molmil
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, BACTERIOCHLOROPHYLL A, ...
Authors:Tani, K, Kanno, R, Ji, X.-C, Satoh, I, Kobayashi, Y, Nagashima, K.V.P, Hall, M, Yu, L.-J, Kimura, Y, Mizoguchi, A, Humbel, B.M, Madigan, M.T, Wang-Otomo, Z.-Y.
Deposit date:2022-07-28
Release date:2023-02-22
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex.
Nat Commun, 14, 2023
7YMK
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BU of 7ymk by Molmil
Estrogen Receptor Alpha Ligand Binding Domain C381S C417S Y537S Mutant in Complex with an Covalent Selective Estrogen Receptor Degrader 29c and GRIP Peptide
Descriptor: DI(HYDROXYETHYL)ETHER, Estrogen receptor, Grip peptide, ...
Authors:Min, J, Hu, H.B, Yang, Y, Dong, C.E, Zhou, H.B, Chen, C.-C, Guo, R.-T.
Deposit date:2022-07-28
Release date:2023-05-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Discovery of novel covalent selective estrogen receptor degraders against endocrine-resistant breast cancer.
Acta Pharm Sin B, 13, 2023
7YMG
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BU of 7ymg by Molmil
Crystal structure of BRD4 bromodomain 1 (BD1) in complex with 2-({3-ethyl-[1,2,4]triazolo[4,3-b]pyridazin-6-yl}amino)-3-(1H-indol-3-yl)propan-1-ol
Descriptor: (2S)-2-[(3-ethyl-[1,2,4]triazolo[4,3-b]pyridazin-6-yl)amino]-3-(1H-indol-3-yl)propan-1-ol, Bromodomain-containing protein 4, FORMIC ACID, ...
Authors:Kim, J.H, Lee, B.I.
Deposit date:2022-07-28
Release date:2023-01-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of [1,2,4]triazolo[4,3-b]pyridazine derivatives as BRD4 bromodomain inhibitors and structure-activity relationship study.
Sci Rep, 13, 2023
7YM5
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BU of 7ym5 by Molmil
Crystal structure of the Salmonella effector SseK1
Descriptor: MANGANESE (II) ION, Type III secretion system effector arginine glycosyltransferase SseK1, URIDINE-5'-DIPHOSPHATE
Authors:Kim, U.J, Park, J.B, Yoo, Y, Cho, H.S.
Deposit date:2022-07-27
Release date:2023-08-02
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Crystal structure of the Salmonella effector SseK1
To Be Published
7YM1
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BU of 7ym1 by Molmil
Structure of SsbA protein in complex with the anticancer drug 5-fluorouracil
Descriptor: 5-FLUOROURACIL, GLYCEROL, Single-stranded DNA-binding protein
Authors:Huang, Y.H, Yang, P.C, Chiang, W.Y, Lin, E.S, Huang, C.Y.
Deposit date:2022-07-27
Release date:2023-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Crystal Structure of DNA Replication Protein SsbA Complexed with the Anticancer Drug 5-Fluorouracil.
Int J Mol Sci, 24, 2023
7YLZ
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BU of 7ylz by Molmil
Unliganded form of hydroxyamidotransferase TsnB9
Descriptor: SULFATE ION, hydroxyamidotransferase
Authors:Nagata, R, Nishiyama, M, Kuzuyama, T.
Deposit date:2022-07-27
Release date:2023-05-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Substrate Recognition Mechanism of a Trichostatin A-Forming Hydroxyamidotransferase.
Biochemistry, 62, 2023
7YLY
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BU of 7yly by Molmil
yeast TRiC-plp2 complex at S5 closed TRiC state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, MAGNESIUM ION, ...
Authors:Han, W.Y.
Deposit date:2022-07-27
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.
Sci Adv, 9, 2023
7YLX
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BU of 7ylx by Molmil
yeast TRiC-plp2-actin complex at S4 closed TRiC state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, MAGNESIUM ION, ...
Authors:Han, W.Y.
Deposit date:2022-07-27
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.
Sci Adv, 9, 2023
7YLW
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BU of 7ylw by Molmil
yeast TRiC-plp2-tubulin complex at S3 closed TRiC state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Han, W.Y.
Deposit date:2022-07-27
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.
Sci Adv, 9, 2023
7YLV
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BU of 7ylv by Molmil
yeast TRiC-plp2-substrate complex at S2 ATP binding state
Descriptor: Phosducin-like protein 2, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
Authors:Han, W.Y.
Deposit date:2022-07-27
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.91 Å)
Cite:Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.
Sci Adv, 9, 2023
7YLU
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BU of 7ylu by Molmil
yeast TRiC-plp2-substrate complex at S1 TRiC-NPP state
Descriptor: Phosducin-like protein 2, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
Authors:Han, W.Y.
Deposit date:2022-07-27
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.55 Å)
Cite:Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.
Sci Adv, 9, 2023
7YLS
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BU of 7yls by Molmil
Structure of a bacteria protein complex
Descriptor: ACETATE ION, Aromatic-ring-hydroxylating dioxygenase beta subunit, FE (III) ION, ...
Authors:Zhang, H, Ma, Y.J, Yu, G.M, Li, X.Z.
Deposit date:2022-07-26
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a bacteria protein complex
To Be Published
7YLR
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BU of 7ylr by Molmil
Structure of a bacteria protein
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, Ferredoxin
Authors:Zhang, H, Ma, Y.J, Yu, G.M, Li, X.Z.
Deposit date:2022-07-26
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structure of a bacteria protein
To Be Published
7YLF
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BU of 7ylf by Molmil
Crystal structure of the chicken Toll-like receptor 15 TIR domain (2-mercaptoethanol adduct)
Descriptor: GLYCEROL, SULFATE ION, Toll-like receptor 15
Authors:Ko, K.Y, Song, W.S, Yoon, S.I.
Deposit date:2022-07-26
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of the Toll-like receptor 15 TIR domain.
Iucrj, 10, 2023
7YLE
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BU of 7yle by Molmil
RnDmpX in complex with DMSP
Descriptor: 3-(dimethyl-lambda~4~-sulfanyl)propanoic acid, Glycine betaine/proline ABC transporter, periplasmic glycinebetaine/proline-binding protein
Authors:Li, C.Y.
Deposit date:2022-07-26
Release date:2023-01-25
Last modified:2023-04-05
Method:X-RAY DIFFRACTION (2.052 Å)
Cite:Ubiquitous occurrence of a dimethylsulfoniopropionate ABC transporter in abundant marine bacteria.
Isme J, 17, 2023
7YL8
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BU of 7yl8 by Molmil
Neutron structure of Bacillus thermoproteolyticus Ferredoxin at room temperature
Descriptor: Ferredoxin, IRON/SULFUR CLUSTER
Authors:Unno, M, Wada, K, Kobayashi, K.
Deposit date:2022-07-25
Release date:2024-02-07
Method:NEUTRON DIFFRACTION (1.45 Å), X-RAY DIFFRACTION
Cite:Protonation/deprotonation-driven switch for the redox stability of the low-potential [4Fe-4S] ferredoxin
To Be Published
7YL7
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BU of 7yl7 by Molmil
Structure of hIAPP-TF-type3
Descriptor: Islet amyloid polypeptide
Authors:Li, D, Zhang, X.
Deposit date:2022-07-25
Release date:2022-12-28
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A new polymorphism of human amylin fibrils with similar protofilaments and a conserved core.
Iscience, 25, 2022
7YL3
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BU of 7yl3 by Molmil
Structure of hIAPP-TF-type1
Descriptor: Islet amyloid polypeptide
Authors:Li, D, Zhang, X, Wang, Y, Zhu, P.
Deposit date:2022-07-25
Release date:2022-12-28
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A new polymorphism of human amylin fibrils with similar protofilaments and a conserved core.
Iscience, 25, 2022
7YL2
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BU of 7yl2 by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y07004
Descriptor: Bromodomain-containing protein 4, GLYCEROL, N-(1-ethyl-2-oxidanylidene-3H-indol-5-yl)cyclohexanesulfonamide, ...
Authors:Huang, Y, Wei, A, Dong, R, Xu, H, Zhang, C, Chen, Z, Li, J, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-07-25
Release date:2023-07-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y07004
To Be Published

222415

PDB entries from 2024-07-10

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