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6LEG
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BU of 6leg by Molmil
Structure of E. coli beta-glucuronidase complex with uronic isofagomine
Descriptor: (3S,4R,5R)-4,5-dihydroxypiperidine-3-carboxylic acid, Beta-D-glucuronidase
Authors:Lin, H.-Y, Kuo, Y.-H, Lin, C.-H.
Deposit date:2019-11-25
Release date:2021-01-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Entropy-driven binding of gut bacterial beta-glucuronidase inhibitors ameliorates irinotecan-induced toxicity.
Commun Biol, 4, 2021
3S9T
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BU of 3s9t by Molmil
Crystal structure of human carbonic anhydrase isozyme II with 2-chloro-5-{[(4,6-dimethyl-2-pyrimidinyl)sulfanyl]acetyl}benzenesulfonamide
Descriptor: 2-chloro-5-{[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetyl}benzenesulfonamide, BICINE, Carbonic anhydrase 2, ...
Authors:Grazulis, S, Manakova, E, Tamulaitiene, G.
Deposit date:2011-06-02
Release date:2012-04-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Design of [(2-pyrimidinylthio)acetyl]benzenesulfonamides as inhibitors of human carbonic anhydrases.
Eur.J.Med.Chem., 51, 2012
3UYW
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BU of 3uyw by Molmil
Crystal structures of globular head of 2009 pandemic H1N1 hemagglutinin
Descriptor: 2-AMINOETHANESULFONIC ACID, Hemagglutinin
Authors:Xuan, C.L, Shi, Y, Qi, J.X, Xiao, H.X, Gao, G.F.
Deposit date:2011-12-06
Release date:2012-10-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Structural vaccinology: structure-based design of influenza A virus hemagglutinin subtype-specific subunit vaccines
Protein Cell, 2, 2011
3V1L
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BU of 3v1l by Molmil
Crystal Structure of the S112A/H265Q mutant of a C-C hydrolase, BphD from Burkholderia xenovorans LB400
Descriptor: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, MALONIC ACID
Authors:Ghosh, S, Bolin, J.T.
Deposit date:2011-12-09
Release date:2012-03-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identification of an Acyl-Enzyme Intermediate in a meta-Cleavage Product Hydrolase Reveals the Versatility of the Catalytic Triad.
J.Am.Chem.Soc., 134, 2012
3UJJ
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BU of 3ujj by Molmil
Crystal structure of anti-HIV-1 V3 Fab 4025 in complex with Con A peptide
Descriptor: ACETATE ION, Fab region of the heavy chain of anti-HIV-1 V3 monoclonal antibody 4025, GLYCEROL, ...
Authors:Kong, X.P, Sampson, J.
Deposit date:2011-11-07
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human Anti-V3 HIV-1 Monoclonal Antibodies Encoded by the VH5-51/VL Lambda Genes Define a Conserved Antigenic Structure.
Plos One, 6, 2011
3TM6
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BU of 3tm6 by Molmil
Crystal structure of the beta-2 microglobulin DIMC50 disulphide-linked homodimer mutant
Descriptor: Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION
Authors:Colombo, M, Ricagno, S, Bolognesi, M.
Deposit date:2011-08-31
Release date:2012-09-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A recurrent D-strand association interface is observed in beta-2 microglobulin oligomers.
Febs J., 279, 2012
3TVY
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BU of 3tvy by Molmil
Structural Analysis of Adhesive Tip pilin, GBS104 from Group B Streptococcus agalactiae
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cell wall surface anchor family protein, MAGNESIUM ION
Authors:Krishnan, V, Narayana, S.V.L.
Deposit date:2011-09-21
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Streptococcus agalactiae tip pilin GBS104: a model for GBS pili assembly and host interactions.
Acta Crystallogr.,Sect.D, 69, 2013
3TSG
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BU of 3tsg by Molmil
Crystal structure of GES-14
Descriptor: Extended-spectrum beta-lactamase GES-14, GLYCEROL, IODIDE ION
Authors:Delbruck, H, Hoffmann, K.M.V, Bebrone, C.
Deposit date:2011-09-13
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Kinetic and crystallographic studies of extended-spectrum GES-11, GES-12, and GES-14 beta-lactamases.
Antimicrob.Agents Chemother., 56, 2012
3U8J
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BU of 3u8j by Molmil
Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3531 (1-(pyridin-3-yl)-1,4-diazepane)
Descriptor: 1-(pyridin-3-yl)-1,4-diazepane, 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine-binding protein, ...
Authors:Rohde, L.A.H, Ahring, P.K, Jensen, M.L, Nielsen, E.O, Peters, D, Helgstrand, C, Krintel, C, Harpsoe, K, Gajhede, M, Kastrup, J.S, Balle, T.
Deposit date:2011-10-17
Release date:2011-12-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha 4 beta 2 receptors: unique role of halogen bonding revealed.
J.Biol.Chem., 287, 2012
3TMK
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BU of 3tmk by Molmil
CRYSTAL STRUCTURE OF YEAST THYMIDYLATE KINASE COMPLEXED WITH THE BISUBSTRATE INHIBITOR TP5A AT 2.0 A RESOLUTION: IMPLICATIONS FOR CATALYSIS AND AZT ACTIVATION
Descriptor: P1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE, THYMIDYLATE KINASE
Authors:Lavie, A, Schlichting, I, Konrad, M, Goody, R.S, Brundiers, R, Reinstein, J.
Deposit date:1998-01-26
Release date:1999-02-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of yeast thymidylate kinase complexed with the bisubstrate inhibitor P1-(5'-adenosyl) P5-(5'-thymidyl) pentaphosphate (TP5A) at 2.0 A resolution: implications for catalysis and AZT activation.
Biochemistry, 37, 1998
3UL3
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BU of 3ul3 by Molmil
Structural insights into thioredoxin-2: a component of malaria parasite protein secretion machinery
Descriptor: Thioredoxin
Authors:Sharma, A, Sharma, A, Dixit, S, Sharma, A.
Deposit date:2011-11-10
Release date:2011-12-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.905 Å)
Cite:Structural insights into thioredoxin-2: a component of malaria parasite protein secretion machinery.
Sci Rep, 1, 2011
3UX0
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BU of 3ux0 by Molmil
Crystal structure of human 14-3-3 sigma in complex with TASK-3 peptide and stabilizer Fusicoccin H
Descriptor: (4R,5R,6R,6aS,9S,9aE,10aR)-5-hydroxy-9-(hydroxymethyl)-6,10a-dimethyl-3-(propan-2-yl)-1,2,4,5,6,6a,7,8,9,10a-decahydrodicyclopenta[a,d][8]annulen-4-yl alpha-D-gulopyranoside, 14-3-3 protein sigma, CHLORIDE ION, ...
Authors:Thiel, P, Bartel, M, Anders, C, Higuchi, Y, Schumacher, B, Kato, N, Ottmann, C.
Deposit date:2011-12-03
Release date:2013-01-02
Last modified:2013-05-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of k(+) channels at the cell surface.
Chem.Biol., 20, 2013
3V39
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BU of 3v39 by Molmil
Bd3459, A Predatory Peptidoglycan Endopeptidase from Bdellovibrio bacteriovorus
Descriptor: 2-AMINOETHANESULFONIC ACID, D-alanyl-D-alanine carboxypeptidase, SULFATE ION, ...
Authors:Lovering, A.L, Lerner, T.R, Sockett, R.E.
Deposit date:2011-12-13
Release date:2012-02-22
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Specialized peptidoglycan hydrolases sculpt the intra-bacterial niche of predatory Bdellovibrio and increase population fitness.
Plos Pathog., 8, 2012
3V3R
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BU of 3v3r by Molmil
Crystal Structure of GES-11
Descriptor: Extended spectrum class A beta-lactamase GES-11, IODIDE ION, SODIUM ION
Authors:Delbruck, H, Hoffmann, K.M.V, Bebrone, C.
Deposit date:2011-12-14
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Kinetic and crystallographic studies of extended-spectrum GES-11, GES-12, and GES-14 beta-lactamases.
Antimicrob.Agents Chemother., 56, 2012
3UPF
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BU of 3upf by Molmil
Crystal structure of murine norovirus RNA-dependent RNA polymerase bound to NF023
Descriptor: 8-({3-[({3-[(4,6,8-trisulfonaphthalen-1-yl)carbamoyl]phenyl}carbamoyl)amino]benzoyl}amino)naphthalene-1,3,5-trisulfonic acid, RNA-dependent RNA polymerase, SULFATE ION
Authors:Milani, M, Mastrangelo, E, Bolognesi, M.
Deposit date:2011-11-18
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-Based Inhibition of Norovirus RNA-Dependent RNA Polymerases.
J.Mol.Biol., 419, 2012
3UQS
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BU of 3uqs by Molmil
Crystal structures of murine norovirus RNA-dependent RNA polymerase
Descriptor: RNA-dependent RNA polymerase, SULFATE ION
Authors:Milani, M, Mastrangelo, E, Bolognesi, M.
Deposit date:2011-11-21
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Based Inhibition of Norovirus RNA-Dependent RNA Polymerases.
J.Mol.Biol., 419, 2012
3UYX
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BU of 3uyx by Molmil
Crystal structures of globular head of 2009 pandemic H1N1 hemagglutinin
Descriptor: Hemagglutinin, NITRATE ION
Authors:Xuan, C.L, Shi, Y, Qi, J.X, Xiao, H.X, Gao, G.F.
Deposit date:2011-12-06
Release date:2012-10-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural vaccinology: structure-based design of influenza A virus hemagglutinin subtype-specific subunit vaccines
Protein Cell, 2, 2011
8CPO
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BU of 8cpo by Molmil
Crystal structure of the PolB16_OarG intein variant S1A, N183A, C111A, C165A
Descriptor: PolB16 Intein Cys-less
Authors:Kattelmann, S, Pasch, T, Mootz, H.D, Kuemmel, D.
Deposit date:2023-03-03
Release date:2023-05-17
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and biochemical analysis of a novel atypically split intein reveals a conserved histidine specific to cysteine-less inteins.
Chem Sci, 14, 2023
8COT
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BU of 8cot by Molmil
Complex of human soluble adenylyl cyclase 10 catalytic core with inhibitor TDI-10962
Descriptor: 1,2-ETHANEDIOL, 2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate, ACETATE ION, ...
Authors:Steegborn, C, Fushimi, M.
Deposit date:2023-02-28
Release date:2023-04-26
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Scaffold Hopping and Optimization of Small Molecule Soluble Adenyl Cyclase Inhibitors Led by Free Energy Perturbation.
J.Chem.Inf.Model., 63, 2023
8U9F
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BU of 8u9f by Molmil
Crystal structure of Bacteroides thetaiotamicron BT1285 in complex with NaI
Descriptor: 1,2-ETHANEDIOL, Endo-beta-N-acetylglucosaminidase, IODIDE ION, ...
Authors:Sastre, D.E, Navarro, M.V.A.S, Sundberg, E.J.
Deposit date:2023-09-19
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8CPN
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BU of 8cpn by Molmil
Crystal structure of the PolB16_OarG intein variant S1A, N183A
Descriptor: IODIDE ION, PolB16 intein
Authors:Kattelmann, S, Pasch, T, Mootz, H.D, Kummel, D.
Deposit date:2023-03-03
Release date:2023-05-17
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and biochemical analysis of a novel atypically split intein reveals a conserved histidine specific to cysteine-less inteins.
Chem Sci, 14, 2023
8U48
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BU of 8u48 by Molmil
Crystal structure of Bacteroides thetaiotamicron BT1285 D161A-E163A inactive Endoglycosidase in complex with high-mannose N-glycan (Man9GlcNAc2) substrate
Descriptor: Endo-beta-N-acetylglucosaminidase, PHOSPHATE ION, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Sastre, D.E, Sultana, N, Navarro, M.V.A.S, Sundberg, E.J.
Deposit date:2023-09-09
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8W01
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BU of 8w01 by Molmil
Crystal structure of DUF1735 domain-containing protein (GH18-like) from Bacteroides faecium at 2.7 A resolution (Space group C2)
Descriptor: DUF1735 domain-containing protein
Authors:Sastre, D.E, Navarro, M.V.A.S, Sultana, N, Sundberg, E.J.
Deposit date:2024-02-13
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8U46
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BU of 8u46 by Molmil
Crystal structure of Bacteroides thetaiotaomicron VPI-5482 Endoglycosidase BT1285 D161A-E163A inactive version
Descriptor: Endo-beta-N-acetylglucosaminidase
Authors:Sastre, D.E, Sultana, N, Sundberg, E.J.
Deposit date:2023-09-09
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8Z50
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BU of 8z50 by Molmil
Crystal structure of the ASF1-H3T-H4 complex
Descriptor: Histone H3.1t, Histone H4, Histone chaperone ASF1A
Authors:Xu, L.
Deposit date:2024-04-18
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into instability of the nucleosome driven by histone variant H3T.
Biochem.Biophys.Res.Commun., 727, 2024

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PDB entries from 2024-07-17

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