PDB: 315 件ウェブページステータス検索Chemie searchBIRD

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7N5V	ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing GGACCC (Oligo 20) 分子名称: DNA Strand I, DNA Strand II, ZINC ION, ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2021-06-06 公開日 2022-06-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.08 Å) 主引用文献 Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia. J.Biol.Chem., 299, 2023
6B0R	Zinc finger Domain of WT1(-KTS form) with M342R Mutation and 14+1mer Oligonucleotide with 3' Triplet TGG 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*GP*GP*TP*TP*A)-3'), DNA (5'-D(P*TP*AP*AP*CP*CP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.818 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
8SSU	ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 19mer DNA 分子名称: 1,2-ETHANEDIOL, DNA (19-MER) Strand I, DNA (19-MER) Strand II, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SST	ZnFs 1-7 of CCCTC-binding factor (CTCF) K365T Mutant Complexed with 23mer 分子名称: 1,2-ETHANEDIOL, DNA Strand (23mer) I, DNA Strand (23mer) II, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SSS	ZnFs 1-7 of CCCTC-binding factor (CTCF) Complexed with 23mer 分子名称: 1,2-ETHANEDIOL, DNA Strand (23mer) I, DNA Strand (23mer) II, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SSQ	ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 35mer DNA 35-4 分子名称: DNA (35-MER) Strand 2, DNA (35-MER) Strand I, SODIUM ION, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SSR	ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 35mer DNA 35-20 分子名称: DNA (35-MER) Strand I, DNA (35-MER) Strand II, SODIUM ION, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
7N5S	ZBTB7A Zinc Finger Domain Bound to -200 Site of Fetal Globin Promoter (Oligo 6) 分子名称: DNA Strand I, DNA Strand II, ZINC ION, ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2021-06-06 公開日 2021-08-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Structural basis for human ZBTB7A action at the fetal globin promoter. Cell Rep, 36, 2021
7N5T	ZBTB7A Zinc Finger Domain Bound to -200 Site of Fetal Globin Promoter (Oligo 5) 分子名称: DNA Strand I, DNA Strand II, ZINC ION, ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2021-06-06 公開日 2021-08-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural basis for human ZBTB7A action at the fetal globin promoter. Cell Rep, 36, 2021
6BLW	Zinc finger Domain of WT1(+KTS form) with M342R Mutation and 17+1mer Oligonucleotide with Triplet GGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*AP*AP*CP*CP*CP*TP*CP*CP*CP*AP*TP*TP*TP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*AP*AP*TP*GP*GP*GP*AP*GP*GP*GP*TP*T)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-11-11 公開日 2018-01-03 最終更新日 2018-05-16 実験手法 X-RAY DIFFRACTION (1.835 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
5KE7	mouse Klf4 ZnF1-3 and TpG/MpA sequence DNA complex structure 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*GP*AP*GP*GP*TP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*(5CM)P*AP*CP*CP*TP*C)-3'), ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-06-09 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res., 44, 2016
6B0Q	Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT 分子名称: DNA (5'-D(P*AP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*TP*T)-3'), SULFATE ION, ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.794 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
5K5I	Homo sapiens CCCTC-binding factor (CTCF) ZnF5-8 and DNA complex structure in space group P65 分子名称: DNA (5'-D(*CP*CP*CP*TP*GP*CP*TP*GP*GP*CP*AP*CP*C)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*G)-3'), SULFATE ION, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-05-23 公開日 2017-05-24 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
5KE6	mouse Klf4 ZnF1-3 and TpG/CpA sequence DNA complex structure 分子名称: DNA (5'-D(*GP*AP*GP*GP*TP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*AP*CP*CP*TP*C)-3'), Krueppel-like factor 4, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-06-09 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res., 44, 2016
5KEB	mouse Klf4 ZnF1-3 (E446D) and CpG/CpG sequence DNA complex structure: Form II 分子名称: DNA (5'-D(*GP*AP*GP*GP*CP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*GP*CP*CP*TP*C)-3'), Krueppel-like factor 4, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-06-09 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.453 Å) 主引用文献 Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res., 44, 2016
6B0O	Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet TGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.552 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
5V3G	PRDM9-allele-C ZnF8-13 分子名称: DNA (5'-D(*AP*GP*GP*GP*CP*AP*AP*CP*GP*CP*TP*CP*AP*CP*TP*GP*GP*GP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*CP*CP*AP*GP*TP*GP*AP*GP*CP*GP*TP*TP*GP*CP*CP*C)-3'), PR domain zinc finger protein 9, ... 著者 Patel, A, Cheng, X. 登録日 2017-03-07 公開日 2017-08-23 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.416 Å) 主引用文献 Structural basis of human PR/SET domain 9 (PRDM9) allele C-specific recognition of its cognate DNA sequence. J. Biol. Chem., 292, 2017
6B0P	Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet GGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(P*AP*CP*CP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*GP*GP*T)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.077 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
5K5L	Homo sapiens CCCTC-binding factor (CTCF) ZnF6-8 and H19 sequence DNA complex structure 分子名称: DNA (5'-D(*GP*TP*TP*GP*CP*CP*GP*CP*GP*TP*G)-3'), DNA (5'-D(P*AP*CP*GP*CP*GP*GP*CP*AP*AP*C)-3'), Transcriptional repressor CTCF, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-05-23 公開日 2017-05-24 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.125 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
5V3M	mouseZFP568-ZnF1-11 in complex with DNA 分子名称: DNA (28-MER), ZINC ION, Zinc finger protein 568 著者 Patel, A, Cheng, X. 登録日 2017-03-07 公開日 2018-03-07 最終更新日 2019-09-18 実験手法 X-RAY DIFFRACTION (2.091 Å) 主引用文献 DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins. Cell, 173, 2018
5V3J	mouseZFP568-ZnF1-10 in complex with DNA 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (26-MER), MAGNESIUM ION, ... 著者 Patel, A, Cheng, X. 登録日 2017-03-07 公開日 2018-03-07 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.064 Å) 主引用文献 DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins. Cell, 173, 2018
7Y3L	Structure of SALL3 ZFC4 bound with 12 bp AT-rich dsDNA 分子名称: DNA (12-mer), Sal-like protein 3, ZINC ION 著者 Ru, W, Xu, C. 登録日 2022-06-11 公開日 2022-10-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif. J.Biol.Chem., 298, 2022
7Y3K	Structure of SALL4 ZFC4 bound with 16 bp AT-rich dsDNA 分子名称: DNA (16-mer), Sal-like protein 4, ZINC ION 著者 Ru, W, Xu, C. 登録日 2022-06-11 公開日 2022-10-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif. J.Biol.Chem., 298, 2022
7Y3I	Structure of DNA bound SALL4 分子名称: DNA (12-mer), Sal-like protein 4, ZINC ION 著者 Ru, W, Xu, C. 登録日 2022-06-10 公開日 2022-10-26 最終更新日 2022-11-30 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif. J.Biol.Chem., 298, 2022
7Y3M	Structure of SALL4 ZFC1 bound with 16 bp AT-rich dsDNA 分子名称: DNA (16-mer), Sal-like protein 4, ZINC ION 著者 Ru, W, Xu, C. 登録日 2022-06-11 公開日 2022-10-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.723 Å) 主引用文献 Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif. J.Biol.Chem., 298, 2022

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