PDB: 934 resultsInfo pagesStatus searchChemie searchBIRD

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5O20	Structure of Nrd1 RNA binding domain in complex with RNA (UUAGUAAUCC) Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Protein NRD1, RNA (5'-R(*UP*AP*GP*UP*AP*AP*UP*C)-3') Authors: Franco-Echevarria, E, Perez-Canadillas, J.M, Gonzalez, B. Deposit date: 2017-05-19 Release date: 2017-08-02 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.53 Å) Cite: The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition. Nucleic Acids Res., 45, 2017
5O1Y	Structure of Nrd1 RNA binding domain in complex with RNA (GUAA) Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Protein NRD1, ... Authors: Franco-Echevarria, E, Perez-Canadillas, J.M, Gonzalez, B. Deposit date: 2017-05-19 Release date: 2017-08-02 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.45 Å) Cite: The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition. Nucleic Acids Res., 45, 2017
5O1Z	Structure of Nrd1 RNA binding domain in complex with RNA (CGUAAA) Descriptor: Protein NRD1, RNA (5'-R(*CP*GP*UP*AP*AP*A)-3') Authors: Franco-Echevarria, E, Perez-Canadillas, J.M, Gonzalez, B. Deposit date: 2017-05-19 Release date: 2017-08-02 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition. Nucleic Acids Res., 45, 2017
8BY6	Structure of the human nuclear cap-binding complex bound to NCBP3(560-620) and cap-analogue m7GpppG Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, Nuclear cap-binding protein subunit 1, Nuclear cap-binding protein subunit 2, ... Authors: Dubiez, E, Pellegrini, E, Foucher, A.E, Cusack, S, Kadlec, J. Deposit date: 2022-12-12 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.19 Å) Cite: Structural basis for competitive binding of productive and degradative co-transcriptional effectors to the nuclear cap-binding complex. Cell Rep, 43, 2024
8E5T	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ... Authors: Sanghai, Z.A, Piwowarczyk, R, Vanden Broeck, A, Klinge, S. Deposit date: 2022-08-22 Release date: 2023-04-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4 Å) Cite: A co-transcriptional ribosome assembly checkpoint controls nascent large ribosomal subunit maturation. Nat.Struct.Mol.Biol., 30, 2023
8CG3	Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 1) Descriptor: TAR DNA-binding protein 43 Authors: Arseni, D, Ryskeldi-Falcon, B. Deposit date: 2023-02-03 Release date: 2023-08-02 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.39 Å) Cite: TDP-43 forms amyloid filaments with a distinct fold in type A FTLD-TDP. Nature, 620, 2023
8CGG	Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 2) Descriptor: TAR DNA-binding protein 43 Authors: Arseni, D, Ryskeldi-Falcon, B. Deposit date: 2023-02-04 Release date: 2023-08-02 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: TDP-43 forms amyloid filaments with a distinct fold in type A FTLD-TDP. Nature, 620, 2023
8CGH	Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 3) Descriptor: TAR DNA-binding protein 43 Authors: Arseni, D, Ryskeldi-Falcon, B. Deposit date: 2023-02-04 Release date: 2023-08-02 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.68 Å) Cite: TDP-43 forms amyloid filaments with a distinct fold in type A FTLD-TDP. Nature, 620, 2023
8EUP	Ytm1 associated 60S nascent ribosome State 1A Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ESQ	Ytm1 associated nascent 60S ribosome State 2 Descriptor: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-14 Release date: 2022-11-30 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EV3	Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETH	Ytm1 associated 60S nascent ribosome State 1B Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EUY	Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ESR	Ytm1 associated nascent 60S ribosome (-fkbp39) State 2 Descriptor: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-14 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETI	Fkbp39 associated 60S nascent ribosome State 1 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETG	Fkbp39 associated 60S nascent ribosome State 3 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
7OHQ	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHP	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHS	Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (4.38 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHW	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHV	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C Descriptor: 25S rRNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, 5.8S rRNA, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHX	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHR	Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae Descriptor: 25S rRNA, 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-10 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (4.72 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7VPX	The cryo-EM structure of the human pre-A complex Descriptor: 5SS, DnaJ homolog subfamily C member 8, PHD finger-like domain-containing protein 5A, ... Authors: Zhang, X, Zhan, X, Shi, Y. Deposit date: 2021-10-18 Release date: 2023-05-03 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural insights into branch site proofreading by human spliceosome. Nat.Struct.Mol.Biol., 2024
7ONB	Structure of the U2 5' module of the A3'-SSA complex Descriptor: MINX, PHD finger-like domain-containing protein 5A, RNU2, ... Authors: Cretu, C, Pena, V. Deposit date: 2021-05-25 Release date: 2021-08-04 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors. Nat Commun, 12, 2021

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