PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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5EG6	CSL-RITA complex bound to DNA Descriptor: 1,2-ETHANEDIOL, 1,4-BUTANEDIOL, DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3'), ... Authors: Tabaja, N.H, Kovall, R.A. Deposit date: 2015-10-26 Release date: 2017-04-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.094 Å) Cite: CSL-RITA complex bound to DNA To Be Published
1EAO	THE RUNX1 Runt domain at 1.4A resolution: a structural switch and specifically bound chloride ions modulate DNA binding Descriptor: BROMIDE ION, RUNT-RELATED TRANSCRIPTION FACTOR 1 Authors: Backstrom, S, Wolf-Watz, M, Grundstrom, C, Hard, T.H, Grundstrom, T, Sauer, U.H. Deposit date: 2001-07-14 Release date: 2002-09-12 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The Runx1 Runt Domain at 1.25A Resolution: A Structural Switch and Specifically Bound Chloride Ions Modulate DNA Binding J.Mol.Biol., 322, 2002
7MZ1	Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-23 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.175 Å) Cite: Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP To Be Published
7MZ2	Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(4DU)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-23 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.088 Å) Cite: Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP To Be Published
7MZ4	Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-24 Release date: 2022-06-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.076 Å) Cite: Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP To Be Published
7MZ8	Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) at N-1 of the template base paired with incoming dTTP Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(DZM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-24 Release date: 2022-06-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure Of Human Dna Polymerase Beta Complexed With 8Oa As The Template Base In A 1-Nucleotide Gapped Dna To Be Published
5NBN	Crystal structure of the Arp4-N-actin-Arp8-Ino80HSA module of INO80 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, Actin-like protein ARP8, ... Authors: Knoll, K.R, Eustermann, S, Hopfner, K.P. Deposit date: 2017-03-02 Release date: 2018-08-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (4 Å) Cite: The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling. Nat. Struct. Mol. Biol., 25, 2018
2ISZ	Crystal structure of a two-domain IdeR-DNA complex crystal form I Descriptor: Iron-dependent repressor ideR, NICKEL (II) ION, SODIUM ION, ... Authors: Wisedchaisri, G, Chou, C.J, Wu, M, Roach, C, Rice, A.E, Holmes, R.K, Beeson, C, Hol, W.G. Deposit date: 2006-10-18 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.403 Å) Cite: Crystal structures, metal activation, and DNA-binding properties of two-domain IdeR from Mycobacterium tuberculosis Biochemistry, 46, 2007
2IT0	Crystal structure of a two-domain IdeR-DNA complex crystal form II Descriptor: ACETATE ION, Iron-dependent repressor ideR, NICKEL (II) ION, ... Authors: Wisedchaisri, G, Chou, C.J, Wu, M, Roach, C, Rice, A.E, Holmes, R.K, Beeson, C, Hol, W.G. Deposit date: 2006-10-18 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structures, metal activation, and DNA-binding properties of two-domain IdeR from Mycobacterium tuberculosis Biochemistry, 46, 2007
2O97	Crystal Structure of E. coli HU heterodimer Descriptor: CHLORIDE ION, DNA-binding protein HU-alpha, DNA-binding protein HU-beta, ... Authors: Guo, F, Adhya, S. Deposit date: 2006-12-13 Release date: 2007-03-06 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Spiral structure of Escherichia coli HU{alpha}beta provides foundation for DNA supercoiling. Proc.Natl.Acad.Sci.Usa, 104, 2007
1EAN	THE RUNX1 Runt domain at 1.70A resolution: A structural switch and specifically bound chloride ions modulate DNA binding Descriptor: CHLORIDE ION, RUNT-RELATED TRANSCRIPTION FACTOR 1 Authors: Backstrom, S, Wolf-Watz, M, Grundstrom, C, Hard, T, Grundstrom, T, Sauer, U.H. Deposit date: 2001-07-13 Release date: 2002-09-12 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The Runx1 Runt Domain at 1.25 A Resolution: A Structural Switch and Specifically Bound Chloride Ions Modulate DNA Binding J.Mol.Biol., 322, 2002
6U2O	Structure of human DNA polymerase beta misinserting dAMPNPP opposite the 5'G of the cisplatin Pt-GG intrastrand crosslink Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, Cisplatin, DNA (5'-D(*CP*CP*CP*AP*CP*GP*GP*CP*CP*CP*AP*TP*CP*AP*CP*C)-3'), ... Authors: Ouzon-Shubeita, H, Vilas, C.K, Lee, S. Deposit date: 2019-08-20 Release date: 2020-08-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of the Mutagenic Bypass of the Major Cisplatin-DNA Lesion by Human DNA Polymerase Beta Reveal Insights into Cisplatin-Induced Mutagenesis To Be Published
3A01	Crystal structure of Aristaless and Clawless homeodomains bound to DNA Descriptor: 5'-D(*CP*CP*GP*CP*AP*AP*TP*TP*AP*AP*TP*TP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*AP*AP*TP*TP*AP*AP*TP*TP*GP*CP*GP*G)-3', Homeobox protein aristaless, ... Authors: Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M. Deposit date: 2009-02-28 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless Embo J., 29, 2010
4LG0	Structure of a ternary FOXO1-ETS1 DNA complex Descriptor: CALCIUM ION, DNA (5'-D(*DAP*DAP*DAP*DCP*DAP*DAP*DTP*DAP*DAP*DCP*DAP*DGP*DGP*DAP*DAP*DAP*DCP*DCP*DGP*DTP*DG)-3'), DNA (5'-D(*DTP*DTP*DCP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DCP*DCP*DTP*DGP*DTP*DTP*DAP*DTP*DTP*DGP*DT)-3'), ... Authors: Birrane, G, Choy, W.C, Datta, D, Geiger, C.A, Grant, M.A. Deposit date: 2013-06-27 Release date: 2014-07-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structure of a ternary FOXO1-ETS1 DNA complex To be Published
3F1V	E. coli Beta Sliding Clamp, 148-153 Ala Mutant Descriptor: CALCIUM ION, CHLORIDE ION, DNA polymerase III subunit beta Authors: Cody, V. Deposit date: 2008-10-28 Release date: 2009-09-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Sliding clamp-DNA interactions are required for viability and contribute to DNA polymerase management in Escherichia coli. J.Mol.Biol., 387, 2009
6ZMN	Crystal structure of the Smad3-Smad5 MH1 domain chimera bound to the GGCGC site Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3'), ... Authors: Pluta, R, Macias, M.J. Deposit date: 2020-07-03 Release date: 2020-08-26 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.333 Å) Cite: Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes. Comput Struct Biotechnol J, 19, 2021
1K78	Pax5(1-149)+Ets-1(331-440)+DNA Descriptor: C-ets-1 Protein, Paired Box Protein Pax5, Pax5/Ets Binding Site on the mb-1 promoter Authors: Garvie, C.W, Hagman, J, Wolberger, C. Deposit date: 2001-10-18 Release date: 2002-01-04 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural studies of Ets-1/Pax5 complex formation on DNA. Mol.Cell, 8, 2001
1ODH	Structure of the GCM domain bound to DNA Descriptor: 5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3', 5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3', MGCM1, ... Authors: Cohen, S.X, Muller, C.W. Deposit date: 2003-02-19 Release date: 2003-04-08 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Crystal Structure of the Gcm Domain-DNA Complex: A DNA-Binding Domain with a Novel Fold and Mode of Target Site Recognition Embo J., 22, 2003
8HDZ	Monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex in an apo form Descriptor: A22 DNA replication processivity factor, E4 uracil-DNA glycosylase, F8 DNA polymerase Authors: Xu, Y, Wu, Y, Zhang, Y, Fan, R, Yang, Y, Li, D, Yang, B, Zhang, Z, Dong, C. Deposit date: 2022-11-07 Release date: 2023-11-15 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Cryo-EM structures of human monkeypox viral replication complexes with and without DNA duplex. Cell Res., 33, 2023
6CU9	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP and MANGANESE Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2018-03-24 Release date: 2019-03-27 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP and MANGANESE To Be Published
6CPQ	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2018-03-13 Release date: 2019-03-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP To Be Published
2C6Y	Crystal structure of interleukin enhancer-binding factor 1 bound to DNA Descriptor: FORKHEAD BOX PROTEIN K2, INTERLEUKIN 2 PROMOTOR, MAGNESIUM ION Authors: Tsai, K.-L, Huang, C.-Y, Chang, C.-H, Sun, Y.-J, Chuang, W.-J, Hsiao, C.-D. Deposit date: 2005-11-15 Release date: 2006-04-18 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of the Human Foxk1A-DNA Complex and its Implications on the Diverse Binding Specificity of Winged Helix/Forkhead Proteins. J.Biol.Chem., 281, 2006
6CUB	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable ATP and MANGANESE Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2018-03-25 Release date: 2019-03-27 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable ATP and MANGANESE To Be Published
6CUA	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP and MANGANESE Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2018-03-24 Release date: 2019-03-27 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP and MANGANESE To Be Published
5H5P	Crystal structure of Myelin-gene Regulatory Factor DNA binding domain Descriptor: Myelin regulatory factor Authors: Shi, N, Zhen, X, Li, B. Deposit date: 2016-11-09 Release date: 2017-06-28 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (2.461 Å) Cite: Crystal structure of the DNA-binding domain of Myelin-gene Regulatory Factor. Sci Rep, 7, 2017

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